AlfalfaGEDB | MsaG039182

M. sativa ssp. caerulea / MsaG039182

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039182	XP_039683935.1	91.346	208	15	1	1	205	1	208	1.27e-138	397

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039182	tr\|A0A396H4J8\|A0A396H4J8_MEDTR	91.346	208	15	1	1	205	1	208	6.07e-139	397

TFs/TRs:

Gene ID	Type	Classification
MsaG039182	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000290	MsaG039182	0.803839	4.850885e-49	7.158729e-47
MsaG000675	MsaG039182	0.819123	2.393730e-52	5.144631e-50
MsaG000827	MsaG039182	0.800918	1.925366e-48	2.657669e-46
MsaG000863	MsaG039182	0.833433	9.698596e-56	3.100999e-53
MsaG000984	MsaG039182	0.806709	1.222977e-49	1.930017e-47
MsaG001016	MsaG039182	0.809052	3.904524e-50	6.517140e-48
MsaG001113	MsaG039182	0.826287	5.243401e-54	1.366841e-51
MsaG001114	MsaG039182	0.836853	1.342722e-56	4.755023e-54
MsaG001636	MsaG039182	0.804161	4.159466e-49	6.184643e-47
MsaG002435	MsaG039182	0.841171	1.035438e-57	4.194004e-55
MsaG002477	MsaG039182	0.836336	1.816333e-56	6.332872e-54
MsaG002888	MsaG039182	0.802985	7.274058e-49	1.052523e-46
MsaG003677	MsaG039182	0.805316	2.393846e-49	3.655942e-47
MsaG005330	MsaG039182	0.830950	3.963702e-55	1.178736e-52
MsaG005434	MsaG039182	0.822117	4.951981e-53	1.151989e-50
MsaG005847	MsaG039182	0.823271	2.676005e-53	6.422340e-51
MsaG006223	MsaG039182	0.837345	1.006927e-56	3.619475e-54
MsaG006455	MsaG039182	0.809536	3.078092e-50	5.198080e-48
MsaG006514	MsaG039182	0.816472	9.431326e-52	1.892560e-49
MsaG006759	MsaG039182	0.851961	1.207489e-60	7.005421e-58
MsaG007372	MsaG039182	0.845928	5.619687e-59	2.655177e-56
MsaG007928	MsaG039182	0.812867	5.878194e-51	1.077097e-48
MsaG008470	MsaG039182	0.816501	9.295169e-52	1.866637e-49
MsaG008892	MsaG039182	0.818281	3.709404e-52	7.798632e-50
MsaG009499	MsaG039182	0.812699	6.396582e-51	1.167184e-48
MsaG009596	MsaG039182	0.805575	2.113953e-49	3.247890e-47
MsaG009757	MsaG039182	0.832813	1.381831e-55	4.338083e-53
MsaG009919	MsaG039182	0.806579	1.302652e-49	2.049490e-47
MsaG010565	MsaG039182	0.825496	8.065994e-54	2.056902e-51
MsaG010573	MsaG039182	0.837619	8.573655e-57	3.107858e-54
MsaG010887	MsaG039182	0.808408	5.352223e-50	8.795707e-48
MsaG011458	MsaG039182	0.804710	3.201060e-49	4.820310e-47
MsaG012834	MsaG039182	0.812625	6.636142e-51	1.208657e-48
MsaG013438	MsaG039182	0.824682	1.253345e-53	3.125409e-51
MsaG013804	MsaG039182	0.889959	3.335059e-73	9.807168e-70
MsaG013851	MsaG039182	0.839815	2.333847e-57	9.058366e-55
MsaG014071	MsaG039182	0.834653	4.816562e-56	1.596781e-53
MsaG014348	MsaG039182	0.814537	2.530857e-51	4.835542e-49
MsaG014743	MsaG039182	0.819186	2.316748e-52	4.987370e-50
MsaG015725	MsaG039182	0.836447	1.702646e-56	5.956436e-54
MsaG015769	MsaG039182	0.811523	1.150892e-50	2.039910e-48
MsaG016112	MsaG039182	0.862882	7.337218e-64	6.373769e-61
MsaG018787	MsaG039182	0.819193	2.308315e-52	4.970133e-50
MsaG020193	MsaG039182	0.871328	1.518453e-66	1.861590e-63
MsaG020221	MsaG039182	0.831089	3.665844e-55	1.094550e-52
MsaG021032	MsaG039182	0.818623	3.105866e-52	6.588060e-50
MsaG021125	MsaG039182	0.853992	3.188787e-61	1.987418e-58
MsaG021219	MsaG039182	0.803201	6.568779e-49	9.552151e-47
MsaG021373	MsaG039182	0.810041	2.399498e-50	4.101756e-48
MsaG021783	MsaG039182	0.805503	2.187724e-49	3.355660e-47
MsaG021799	MsaG039182	0.908648	3.261926e-81	2.825433e-77
MsaG022388	MsaG039182	0.830386	5.440062e-55	1.591920e-52
MsaG022609	MsaG039182	0.800290	2.582687e-48	3.514753e-46
MsaG022681	MsaG039182	0.803437	5.871620e-49	8.584960e-47
MsaG023028	MsaG039182	0.818857	2.749587e-52	5.868073e-50
MsaG024268	MsaG039182	0.816097	1.142976e-51	2.271786e-49
MsaG024606	MsaG039182	0.815147	1.856617e-51	3.602274e-49
MsaG024762	MsaG039182	0.834743	4.573900e-56	1.520435e-53
MsaG025331	MsaG039182	0.807477	8.426354e-50	1.354162e-47
MsaG025500	MsaG039182	0.819600	1.866351e-52	4.061319e-50
MsaG025908	MsaG039182	0.812947	5.646107e-51	1.036639e-48
MsaG026591	MsaG039182	0.804995	2.791879e-49	4.232221e-47
MsaG028397	MsaG039182	0.813236	4.882410e-51	9.029296e-49
MsaG028417	MsaG039182	0.813553	4.162849e-51	7.759928e-49
MsaG028557	MsaG039182	0.810882	1.582869e-50	2.761843e-48
MsaG028740	MsaG039182	0.855506	1.167182e-61	7.679922e-59
MsaG029024	MsaG039182	0.821430	7.127193e-53	1.627938e-50
MsaG030244	MsaG039182	0.803505	5.685066e-49	8.325238e-47
MsaG030382	MsaG039182	0.827150	3.270558e-54	8.733006e-52
MsaG030657	MsaG039182	0.804122	4.238785e-49	6.296825e-47
MsaG030833	MsaG039182	0.824357	1.493518e-53	3.691661e-51
MsaG031347	MsaG039182	0.849049	7.869653e-60	4.129184e-57
MsaG032531	MsaG039182	0.857683	2.693189e-62	1.919144e-59
MsaG032860	MsaG039182	0.807105	1.009439e-49	1.607926e-47
MsaG032896	MsaG039182	0.827873	2.198554e-54	5.990792e-52
MsaG032914	MsaG039182	0.803298	6.273489e-49	9.143043e-47
MsaG033736	MsaG039182	0.832358	1.789374e-55	5.543748e-53
MsaG033878	MsaG039182	0.832412	1.735872e-55	5.386242e-53
MsaG034389	MsaG039182	0.818710	2.968715e-52	6.311358e-50
MsaG034933	MsaG039182	0.850092	4.041226e-60	2.196846e-57
MsaG035818	MsaG039182	0.824803	1.174237e-53	2.937867e-51
MsaG035888	MsaG039182	0.832464	1.685168e-55	5.237047e-53
MsaG036271	MsaG039182	0.804475	3.581933e-49	5.364572e-47
MsaG036272	MsaG039182	0.820204	1.359543e-52	3.006540e-50
MsaG037338	MsaG039182	0.806045	1.685531e-49	2.618512e-47
MsaG037736	MsaG039182	0.853573	4.206097e-61	2.582240e-58
MsaG038166	MsaG039182	0.815703	1.398332e-51	2.751672e-49
MsaG038244	MsaG039182	0.807938	6.733707e-50	1.094211e-47
MsaG038298	MsaG039182	0.832831	1.367662e-55	4.295896e-53
MsaG038458	MsaG039182	0.802524	9.047719e-49	1.295395e-46
MsaG038775	MsaG039182	0.805398	2.300895e-49	3.520682e-47
MsaG038776	MsaG039182	0.850299	3.537413e-60	1.936758e-57
MsaG039129	MsaG039182	0.801915	1.205696e-48	1.702382e-46
MsaG039182	MsaG039183	0.908785	2.810089e-81	2.454688e-77
MsaG039182	MsaG039190	0.836184	1.984572e-56	6.887877e-54
MsaG039182	MsaG039471	0.822222	4.681499e-53	1.092151e-50
MsaG039182	MsaG040019	0.832715	1.461198e-55	4.574407e-53
MsaG039182	MsaG040039	0.804298	3.897677e-49	5.813851e-47
MsaG039182	MsaG040148	0.822158	4.845270e-53	1.128425e-50
MsaG039182	MsaG040266	0.836074	2.115550e-56	7.318116e-54
MsaG039182	MsaG040742	0.853322	4.961571e-61	3.019244e-58
MsaG039182	MsaG040955	0.832756	1.427024e-55	4.472757e-53
MsaG039182	MsaG041557	0.907290	1.416584e-80	1.125282e-76
MsaG039182	MsaG041550	0.820671	1.063905e-52	2.381699e-50
MsaG039182	MsaG041563	0.857304	3.482700e-62	2.447198e-59
MsaG039182	MsaG041623	0.824426	1.438900e-53	3.563280e-51
MsaG039182	MsaG041624	0.816026	1.185411e-51	2.351876e-49
MsaG039182	MsaG041801	0.802155	1.077173e-48	1.529174e-46
MsaG039182	MsaG041862	0.826802	3.958985e-54	1.046872e-51
MsaG039182	MsaG041864	0.808940	4.125204e-50	6.866905e-48
MsaG039182	MsaG042050	0.835933	2.296956e-56	7.912043e-54
MsaG039182	MsaG042799	0.801096	1.771613e-48	2.455271e-46
MsaG039182	MsaG043347	0.807355	8.943024e-50	1.433000e-47
MsaG039182	MsaG044189	0.818409	3.470527e-52	7.320660e-50
MsaG039182	MsaG044703	0.855881	9.079536e-62	6.055599e-59
MsaG039182	MsaG045139	0.800647	2.185549e-48	2.998597e-46
MsaG039182	MsaG045152	0.811283	1.296899e-50	2.285257e-48
MsaG039182	MsaG045314	0.829750	7.764501e-55	2.230991e-52
MsaG039182	MsaG045348	0.826442	4.820255e-54	1.262019e-51
MsaG039182	MsaG046347	0.811223	1.336016e-50	2.350734e-48
MsaG039182	MsaG047134	0.819642	1.825777e-52	3.977445e-50
MsaG039182	MsaG000781	0.869978	4.196228e-66	4.858972e-63
MsaG039182	MsaG011616	0.828151	1.885081e-54	5.176976e-52
MsaG039182	MsaG013435	0.835462	3.018699e-56	1.025228e-53
MsaG039182	MsaG013283	0.801214	1.676477e-48	2.329610e-46
MsaG039182	MsaG020089	0.865800	9.093126e-65	8.870251e-62
MsaG039182	MsaG018616	0.850788	2.581589e-60	1.437727e-57
MsaG039182	MsaG018883	0.805570	2.118647e-49	3.254787e-47
MsaG039182	MsaG031442	0.824436	1.431128e-53	3.545022e-51
MsaG039182	MsaG033152	0.800050	2.887601e-48	3.908693e-46
MsaG039182	MsaG043204	0.811359	1.249036e-50	2.204973e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039182	MtrunA17_Chr7g0255511	91.346	208	15	1	1	205	1	208	1.17e-142	397
MsaG039182	MtrunA17_Chr7g0225091	75.943	212	34	2	1	209	1	198	2.06e-113	323
MsaG039182	MtrunA17_Chr7g0225121	82.162	185	30	1	1	182	1	185	7.22e-112	318
MsaG039182	MtrunA17_Chr7g0222361	75.556	180	43	1	31	209	1	180	3.92e-102	293
MsaG039182	MtrunA17_Chr7g0222371	75.207	121	26	2	19	135	1	121	7.37e-62	189

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGTGTGGATATCATTATTA+TGG	0.231665	7:-85644260	MsaT039182.1:CDS
CTCCTTCCCCTTGTTGCACA+TGG	0.338672	7:+85644679	None:intergenic
TCCAAGCATTGTTAAAAGCT+TGG	0.375606	7:+85644342	None:intergenic
CACCATCTCTCCATTCCATA+TGG	0.384400	7:-85644282	MsaT039182.1:CDS
AATGATATCCACACCCCATA+TGG	0.402297	7:+85644267	None:intergenic
AATTACTCAAATGGTGATCA+AGG	0.411277	7:-85644317	MsaT039182.1:CDS
AACAATATGATTCAGCATGC+AGG	0.425567	7:-85644233	MsaT039182.1:CDS
ATGTTGAAACTCAGAATTCA+AGG	0.446337	7:-85644574	MsaT039182.1:CDS
GCTTGGATAAATTACTCAAA+TGG	0.450589	7:-85644326	MsaT039182.1:CDS
AGTAGCCAATTTGAAGATGA+TGG	0.452167	7:-85644639	MsaT039182.1:CDS
AATATGTCTGAGATTGAAGT+TGG	0.464395	7:-85644107	MsaT039182.1:CDS
TCATCTGCTTCATCTATCTC+TGG	0.464587	7:+85644161	None:intergenic
ACCATCTCTCCATTCCATAT+GGG	0.464694	7:-85644281	MsaT039182.1:CDS
TCACAGGAAAAGTATTCAAA+AGG	0.468253	7:-85644465	MsaT039182.1:CDS
TTCACTAGTCCACAGGCATT+AGG	0.474635	7:-85644413	MsaT039182.1:CDS
TGAAGTTGGTTCAGTTTCAA+AGG	0.476665	7:-85644093	MsaT039182.1:CDS
TTGGATTCATTGTTGATCAC+AGG	0.479894	7:-85644481	MsaT039182.1:CDS
CAAGAGAAAGGCAATTGTGC+TGG	0.501297	7:-85644606	MsaT039182.1:CDS
CTTTGATGCCATGTGCAACA+AGG	0.514941	7:-85644687	None:intergenic
GAAGTTGGTTCAGTTTCAAA+GGG	0.529917	7:-85644092	MsaT039182.1:CDS
TCTCCATTCCATATGGGGTG+TGG	0.536840	7:-85644275	MsaT039182.1:CDS
GGAAAATCAGAACAAGAGAA+AGG	0.539450	7:-85644618	MsaT039182.1:CDS
ACAATATGATTCAGCATGCA+GGG	0.561522	7:-85644232	MsaT039182.1:CDS
CCCCATATGGAATGGAGAGA+TGG	0.561790	7:+85644280	None:intergenic
TGCCATGTGCAACAAGGGGA+AGG	0.572549	7:-85644681	None:intergenic
CAGAAAGTTCACTAGTCCAC+AGG	0.575345	7:-85644420	MsaT039182.1:CDS
AATTATAATGAAGAGTTCAA+CGG	0.577644	7:-85643727	MsaT039182.1:CDS
TTTGATGCCATGTGCAACAA+GGG	0.577704	7:-85644686	None:intergenic
GTGCAACAAGGGGAAGGAGA+AGG	0.585340	7:-85644675	MsaT039182.1:CDS
GTTGGTTCAGTTTCAAAGGG+AGG	0.593873	7:-85644089	MsaT039182.1:CDS
TATCCACACCCCATATGGAA+TGG	0.594771	7:+85644272	None:intergenic
CCATCTCTCCATTCCATATG+GGG	0.598148	7:-85644280	MsaT039182.1:CDS
ATTACTCAAATGGTGATCAA+GGG	0.605537	7:-85644316	MsaT039182.1:CDS
TGATGACCACCTAATGCCTG+TGG	0.637178	7:+85644404	None:intergenic
TTGATGCCATGTGCAACAAG+GGG	0.659240	7:-85644685	None:intergenic
ACTAGTCCACAGGCATTAGG+TGG	0.661075	7:-85644410	MsaT039182.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	85643708	85644699	85643708	ID=MsaG039182
Chr7	mRNA	85643708	85644699	85643708	ID=MsaT039182.1;Parent=MsaG039182
Chr7	exon	85643708	85643749	85643708	ID=MsaT039182.1.exon2;Parent=MsaT039182.1
Chr7	CDS	85643708	85643749	85643708	ID=cds.MsaT039182.1;Parent=MsaT039182.1
Chr7	exon	85644085	85644699	85644085	ID=MsaT039182.1.exon1;Parent=MsaT039182.1
Chr7	CDS	85644085	85644699	85644085	ID=cds.MsaT039182.1;Parent=MsaT039182.1

Gene Sequence

>MsaT039182.1

ATGTGCAACAAGGGGAAGGAGAAGGTGAATGAAGAATCAGTAGCCAATTTGAAGATGATGGAAAATCAGAACAAGAGAAAGGCAATTGTGCTGGAAGAATCTCATGTTGAAACTCAGAATTCAAGGACTCCCCAAAAAGATGTTGTTGAAGAAGAATCGACTGATTCTTCTAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTGTTGATCACAGGAAAAGTATTCAAAAGGCTTACTCGTGCAAATTTTGTAGCAGAAAGTTCACTAGTCCACAGGCATTAGGTGGTCATCAAAATTCTCACAAATTAGAGAGAAGTCTCAAAAAAAGGATCCAAGCTTTTAACAATGCTTGGATAAATTACTCAAATGGTGATCAAGGGATAAGTCTAAACACCATCTCTCCATTCCATATGGGGTGTGGATATCATTATTATGGATTTAACAATATGATTCAGCATGCAGGGTCTACAAACTTTTATGCAGGGAATTTGTATGGTGCATTGCAGCATATTCCAGAGATAGATGAAGCAGATGAAGCTAATCAAAGCATAATGAGTCAAAAAGTTAATATGTCTGAGATTGAAGTTGGTTCAGTTTCAAAGGGAGGTGTTAATTATAATGAAGAGTTCAACGGAAAGACCAAAGACAAGTAA

Protein sequence

>MsaT039182.1

MCNKGKEKVNEESVANLKMMENQNKRKAIVLEESHVETQNSRTPQKDVVEEESTDSSKEISPFLLFGFIVDHRKSIQKAYSCKFCSRKFTSPQALGGHQNSHKLERSLKKRIQAFNNAWINYSNGDQGISLNTISPFHMGCGYHYYGFNNMIQHAGSTNFYAGNLYGALQHIPEIDEADEANQSIMSQKVNMSEIEVGSVSKGGVNYNEEFNGKTKDK*