AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039196


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039196 MtrunA17_Chr7g0255671 97.526 768 16 2 1 768 1 765 0.0 1534
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039196 AT2G40950.1 49.339 756 286 24 32 759 26 712 4.72e-172 512
MsaG039196 AT3G56660.1 43.704 540 228 14 231 759 137 611 2.23e-120 375
MsaG039196 AT3G10800.1 43.082 636 271 19 144 759 103 667 2.96e-117 369

Find 217 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATAATCCATTCTATTA+TGG 0.219261 7:-85834769 MsaT039196.1:CDS
GGTTTAGTGGATAATGTTTC+TGG 0.228446 7:-85835080 MsaT039196.1:CDS
TGTTGACAGTTGTGGAATTT+TGG 0.245109 7:+85833773 None:intergenic
TCAGGTGCTTCTGTGGTTTC+CGG 0.251766 7:-85836061 MsaT039196.1:CDS
ATCAGAGTCCTGGTGTTTCT+AGG 0.274337 7:-85836036 MsaT039196.1:CDS
CCGAAAGACTCAAGTTGTTT+TGG 0.282431 7:-85834873 MsaT039196.1:CDS
CTGGATGCGGTGGGTACATC+GGG 0.292468 7:+85835357 None:intergenic
ATCGCCATCTCCTACCTCTT+TGG 0.292842 7:+85833603 None:intergenic
TTGGAGGGAAGTGTTGTTAA+AGG 0.298541 7:-85835755 MsaT039196.1:CDS
AAAATACTGAAAATTCTTAC+AGG 0.307136 7:-85835919 MsaT039196.1:CDS
CCTCTATTTCTTCCAACTTC+GGG 0.314759 7:+85834648 None:intergenic
ACCCTCCCAGATCCACTTCC+TGG 0.322326 7:-85833724 MsaT039196.1:CDS
TTGCCGGGCAGGTGGTCTTT+TGG 0.323779 7:+85833661 None:intergenic
GCACCAGGTGGTGGTGGTGG+TGG 0.337944 7:+85835380 None:intergenic
GAATGGACCTGTTTCGTCTC+AGG 0.340862 7:-85835879 MsaT039196.1:CDS
TCAAGGTTCTCAGGTTCCTT+TGG 0.340949 7:-85835279 MsaT039196.1:CDS
TCAGACGACGGTGGTTGTTC+AGG 0.344260 7:+85836313 None:intergenic
TCATTCATATGACCATTTAC+AGG 0.346777 7:+85834999 None:intergenic
GCGGGTTTCAGAAGAAATAT+TGG 0.348033 7:+85833795 None:intergenic
CGGGTTCCAGGAAGTGGATC+TGG 0.348649 7:+85833718 None:intergenic
TTATCAATCACATGCGAAAT+CGG 0.348829 7:+85836094 None:intergenic
ATCCCTCTCCGGCGAATTCA+TGG 0.349100 7:+85835823 None:intergenic
GCCAATGCGGAATTATCTTT+AGG 0.353133 7:+85834675 None:intergenic
GAGAAAGTGCACAGCTTTCA+AGG 0.360135 7:-85835547 MsaT039196.1:CDS
GGGAAGATTTGGCCTGTAAA+TGG 0.365839 7:-85835011 MsaT039196.1:CDS
GGTTGTTCAGGTGGTTGTTC+CGG 0.372524 7:+85836325 None:intergenic
CTAGTTATGTTAGTGATAGA+TGG 0.373574 7:-85835052 MsaT039196.1:CDS
GAAGGTTTGGTATTTCTGAT+AGG 0.374820 7:-85834941 MsaT039196.1:CDS
GGGGCACCAGGTGGTGGTGG+TGG 0.375258 7:+85835377 None:intergenic
GTCATGGTGGAGGGAAGATT+TGG 0.376373 7:-85835022 MsaT039196.1:CDS
TCGCCATCTCCTACCTCTTT+GGG 0.378134 7:+85833604 None:intergenic
TGTGAAAGAGGATGTGAAAT+TGG 0.378389 7:-85835774 MsaT039196.1:CDS
TCTTCCCCGTGTTTCTCCTT+TGG 0.379638 7:-85833491 MsaT039196.1:CDS
CCTGTTTCGTCTCAGGGATC+GGG 0.383787 7:-85835872 MsaT039196.1:CDS
TTTGATGTTTCTCCAACTCC+TGG 0.394532 7:-85833844 MsaT039196.1:CDS
ATTGATAATTCGCCGGAATC+AGG 0.396736 7:-85836079 MsaT039196.1:CDS
TACATCGGGGCACCAGGTGG+TGG 0.397975 7:+85835371 None:intergenic
GTTATGTTCAGACGGGTTCC+AGG 0.403148 7:+85833706 None:intergenic
GGATCGGGGAACGGTGGATC+GGG 0.403786 7:-85835857 MsaT039196.1:CDS
GACCATAGATGATTTATTGC+CGG 0.403947 7:+85833645 None:intergenic
TAAGGCATAGGTGCCATTCC+TGG 0.404229 7:+85835338 None:intergenic
ACCACAGAAGCACCTGATTC+CGG 0.404825 7:+85836067 None:intergenic
CCTTGAGGTTTAACAACATA+AGG 0.407763 7:+85835296 None:intergenic
CCAAAACAACTTGAGTCTTT+CGG 0.407967 7:+85834873 None:intergenic
GTTGCTAGTATTAGTTTGTT+GGG 0.408388 7:-85835164 MsaT039196.1:CDS
TTGCTTCTTTGTATGTTCCT+AGG 0.410557 7:-85834821 MsaT039196.1:CDS
AATGGTCATATGAATGAATC+TGG 0.410603 7:-85834993 MsaT039196.1:CDS
AGTTGCTAGTATTAGTTTGT+TGG 0.413297 7:-85835165 MsaT039196.1:CDS
TCTGGAAGGAATGGGGAAGC+GGG 0.417527 7:-85834975 MsaT039196.1:CDS
ACCTGTTTCGTCTCAGGGAT+CGG 0.420552 7:-85835873 MsaT039196.1:CDS
TGGTTTCGTGAAGGAATTGC+AGG 0.423367 7:-85834507 MsaT039196.1:intron
CCTGCTCTTGTTGACAGTTG+TGG 0.423616 7:+85833765 None:intergenic
CCTGGATGCGGTGGGTACAT+CGG 0.426624 7:+85835356 None:intergenic
GCTGAACAAAGAAGGGCTAT+TGG 0.427676 7:-85834597 MsaT039196.1:CDS
GCCCGGCAATAAATCATCTA+TGG 0.427714 7:-85833647 MsaT039196.1:CDS
TTTCAACAACAAGCTCAATC+TGG 0.433911 7:-85835626 MsaT039196.1:CDS
AAGAAGGAGAAGAGTGAAAC+TGG 0.434906 7:-85834708 MsaT039196.1:CDS
CATCAGTCTCCGACGGGATA+GGG 0.439678 7:+85836155 None:intergenic
ACCTCTATTTCTTCCAACTT+CGG 0.441464 7:+85834647 None:intergenic
TGTTAAACCTCAAGGTTCTC+AGG 0.442420 7:-85835288 MsaT039196.1:CDS
ATGAATGAATCTGGAAGGAA+TGG 0.448209 7:-85834984 MsaT039196.1:CDS
GAAGTGGATCTGGGAGGGTG+TGG 0.450659 7:+85833728 None:intergenic
CTGAAAATTCTTACAGGGAA+AGG 0.454977 7:-85835913 MsaT039196.1:CDS
TCATCAGTCTCCGACGGGAT+AGG 0.456052 7:+85836154 None:intergenic
TTCAGACGGGTTCCAGGAAG+TGG 0.456378 7:+85833712 None:intergenic
GGGATCGGGGAACGGTGGAT+CGG 0.458209 7:-85835858 MsaT039196.1:CDS
ACCATAGATGATTTATTGCC+GGG 0.458374 7:+85833646 None:intergenic
CCCGATCCCTGAGACGAAAC+AGG 0.460311 7:+85835872 None:intergenic
GTCAACATCCGAATGTGTAC+AGG 0.460462 7:-85834626 MsaT039196.1:CDS
TGAGGCTTCAACCTCGGAAT+CGG 0.460632 7:+85835254 None:intergenic
GGGTACATCGGGGCACCAGG+TGG 0.461707 7:+85835368 None:intergenic
CAAAGAAGGGCTATTGGCTC+TGG 0.463181 7:-85834591 MsaT039196.1:CDS
GAAGCCGCAGCAGTTGGCTG+AGG 0.464585 7:+85835236 None:intergenic
AGGATGAGAAGAGGAAAGCA+AGG 0.465492 7:-85835583 MsaT039196.1:CDS
GTAGGAGATGGCGATGTTGA+TGG 0.465751 7:-85833595 MsaT039196.1:CDS
CGACCTCCTACTACATTTCG+AGG 0.468018 7:+85835679 None:intergenic
ATCGGGGCACCAGGTGGTGG+TGG 0.469118 7:+85835374 None:intergenic
ATATTGGCCACTGCTGCTGC+TGG 0.469399 7:+85833811 None:intergenic
AGACTTCATATGGTCCTTCA+AGG 0.470842 7:+85834557 None:intergenic
TATGAAAGAGGGAGGATACT+AGG 0.474635 7:-85834912 MsaT039196.1:CDS
GGTGGGTACATCGGGGCACC+AGG 0.476383 7:+85835365 None:intergenic
CCTTATGTTGTTAAACCTCA+AGG 0.476907 7:-85835296 MsaT039196.1:CDS
GATCCCGATCTCGATTTCCT+TGG 0.479477 7:-85836214 MsaT039196.1:CDS
GCATTGGCTATTCCCGAAGT+TGG 0.481462 7:-85834660 MsaT039196.1:CDS
TGAAAATTCTTACAGGGAAA+GGG 0.481829 7:-85835912 MsaT039196.1:CDS
CCGATGTACCCACCGCATCC+AGG 0.483203 7:-85835356 MsaT039196.1:CDS
GGAACTATTGCTCCAGGAGT+TGG 0.484476 7:+85833832 None:intergenic
CATGGCATCTCAAGATGCTC+AGG 0.484756 7:-85834733 MsaT039196.1:CDS
GGGTTTCCGAATGGAAGGTT+TGG 0.486157 7:-85834954 MsaT039196.1:CDS
GCAGGTCCAATGCTAAGTTC+TGG 0.487433 7:-85833889 MsaT039196.1:intron
AATGGACCTGTTTCGTCTCA+GGG 0.487929 7:-85835878 MsaT039196.1:CDS
TCTCACTAGCCATAATAGAA+TGG 0.490180 7:+85834760 None:intergenic
TGGTTCAACTAAAACCTTGA+AGG 0.490584 7:-85834571 MsaT039196.1:CDS
CTCTTCGAAGCCGCAGCAGT+TGG 0.491101 7:+85835230 None:intergenic
ATCTGGAAGGAATGGGGAAG+CGG 0.494855 7:-85834976 MsaT039196.1:CDS
TGAATGAATCTGGAAGGAAT+GGG 0.497476 7:-85834983 MsaT039196.1:CDS
CAGTTGCAGAAGACTTCATA+TGG 0.499404 7:+85834547 None:intergenic
TCGTCTCAGGGATCGGGGAA+CGG 0.500301 7:-85835866 MsaT039196.1:CDS
GATAGGAATAATTATGAAAG+AGG 0.503581 7:-85834924 MsaT039196.1:CDS
GAAATACCAAACCTTCCATT+CGG 0.504063 7:+85834948 None:intergenic
AGAGGAAAGCAAGGTTGATG+AGG 0.504690 7:-85835574 MsaT039196.1:CDS
GTGGATCTGGGAGGGTGTGG+AGG 0.505432 7:+85833731 None:intergenic
CTGAGCATCTTGAGATGCCA+TGG 0.508247 7:+85834734 None:intergenic
TAGATGATTTATTGCCGGGC+AGG 0.510261 7:+85833650 None:intergenic
TTGCCAAAAGACCACCTGCC+CGG 0.510449 7:-85833664 MsaT039196.1:CDS
GGGTTTCTGCTGAACAAAGA+AGG 0.511157 7:-85834605 MsaT039196.1:CDS
TCAGGTGGTTGTTCCGGCGG+TGG 0.514009 7:+85836331 None:intergenic
GCATTATGTGGAGGAGCTTG+AGG 0.515226 7:-85835513 MsaT039196.1:CDS
GCTGCTGGAACTATTGCTCC+AGG 0.515460 7:+85833826 None:intergenic
TCAAGATGCTCAGGGGAAGA+AGG 0.516725 7:-85834724 MsaT039196.1:CDS
TGAAAATGAAAATGTGAAAG+AGG 0.516780 7:-85835786 MsaT039196.1:CDS
GCACAGGGCATCCATGCATA+AGG 0.516883 7:+85835320 None:intergenic
CCCGAAGTTGGAAGAAATAG+AGG 0.519264 7:-85834648 MsaT039196.1:CDS
TCCTAAAGATAATTCCGCAT+TGG 0.522258 7:-85834676 MsaT039196.1:CDS
GCAGAAACCCTGTACACATT+CGG 0.522493 7:+85834618 None:intergenic
TCCAGGAAGTGGATCTGGGA+GGG 0.523504 7:+85833723 None:intergenic
TTCTTCAGTTATGTTCAGAC+GGG 0.524750 7:+85833699 None:intergenic
TTTGAATTTGGATTCAGTTG+CGG 0.525278 7:-85836011 MsaT039196.1:CDS
TGGCTCCGAAGTCGCTCTCT+CGG 0.526704 7:-85833567 MsaT039196.1:CDS
TAGTGGATAATGTTTCTGGT+AGG 0.527201 7:-85835076 MsaT039196.1:CDS
GGGTTCCAGGAAGTGGATCT+GGG 0.528707 7:+85833719 None:intergenic
GTGCACAGCTTTCAAGGCAG+AGG 0.529811 7:-85835541 MsaT039196.1:CDS
AAGCGGGGTTTCCGAATGGA+AGG 0.530530 7:-85834959 MsaT039196.1:CDS
TTTAACAACATAAGGAGCAC+AGG 0.531090 7:+85835304 None:intergenic
ATCGCCAAGGAAATCGAGAT+CGG 0.531775 7:+85836210 None:intergenic
TTCACCAGCTTATCATTCCT+AGG 0.531777 7:+85834804 None:intergenic
AGCCATGAATTCGCCGGAGA+GGG 0.532866 7:-85835825 MsaT039196.1:CDS
TCGCCAAGGAAATCGAGATC+GGG 0.535175 7:+85836211 None:intergenic
TAGTAAGATTACTTATGTAA+TGG 0.536158 7:-85835450 MsaT039196.1:CDS
AAAATCCGAGAGAGCGACTT+CGG 0.540450 7:+85833562 None:intergenic
TTGAAGAAAGAGTCAAATGA+AGG 0.540485 7:+85836244 None:intergenic
GTTCTTCAGTTATGTTCAGA+CGG 0.540851 7:+85833698 None:intergenic
ATCGAACCTCGAAATGTAGT+AGG 0.541329 7:-85835685 MsaT039196.1:CDS
GTTGGCTGAGGCTTCAACCT+CGG 0.543196 7:+85835248 None:intergenic
TTGTTCCGGCGGTGGTTGAA+CGG 0.544558 7:+85836339 None:intergenic
GATAAGCTGGTGAAGATCGA+TGG 0.548077 7:-85834795 MsaT039196.1:CDS
TTCCTTTGGTTCCGATTCCG+AGG 0.552849 7:-85835265 MsaT039196.1:CDS
CCACAACTGTCAACAAGAGC+AGG 0.555668 7:-85833765 MsaT039196.1:CDS
GCCGGAATCAGGTGCTTCTG+TGG 0.555970 7:-85836068 MsaT039196.1:CDS
GGGGAAGCGGGGTTTCCGAA+TGG 0.561151 7:-85834963 MsaT039196.1:CDS
ATAGGAATAATTATGAAAGA+GGG 0.566000 7:-85834923 MsaT039196.1:CDS
TTAAAGGCTGTGATCTGAAG+AGG 0.569436 7:-85835739 MsaT039196.1:CDS
ATGATTTATTGCCGGGCAGG+TGG 0.572214 7:+85833653 None:intergenic
GTCGTTGTCGATCGAGAGGA+CGG 0.573624 7:-85835660 MsaT039196.1:CDS
GACGACGGTGGTTGTTCAGG+TGG 0.574514 7:+85836316 None:intergenic
ATAGGTGCCATTCCTGGATG+CGG 0.575983 7:+85835344 None:intergenic
AATAGTTCCAGCAGCAGCAG+TGG 0.577132 7:-85833818 MsaT039196.1:CDS
TCTCAGGGATCGGGGAACGG+TGG 0.577492 7:-85835863 MsaT039196.1:CDS
AAAGATGAAACATCCCTCTC+CGG 0.578091 7:+85835812 None:intergenic
CACATGCCAGAACTTAGCAT+TGG 0.578294 7:+85833883 None:intergenic
CTGTTTCGTCTCAGGGATCG+GGG 0.578354 7:-85835871 MsaT039196.1:CDS
TTGAAGATGAGGATGAGAAG+AGG 0.578374 7:-85835592 MsaT039196.1:CDS
ATGAAGTCTTCTGCAACTGA+TGG 0.579273 7:-85834543 MsaT039196.1:CDS
GTTTCCGGTGATCAGAGTCC+TGG 0.579472 7:-85836046 MsaT039196.1:CDS
GCAGAGGAAGAAGCATTATG+TGG 0.581328 7:-85835525 MsaT039196.1:CDS
GTCATATGAATGAATCTGGA+AGG 0.581451 7:-85834989 MsaT039196.1:CDS
CATGATGCATGCAACGCTGA+TGG 0.582211 7:-85836121 MsaT039196.1:CDS
GTACCCACCGCATCCAGGAA+TGG 0.584929 7:-85835351 MsaT039196.1:CDS
GGAATAATTATGAAAGAGGG+AGG 0.585137 7:-85834920 MsaT039196.1:CDS
TGTTCAGGTGGTTGTTCCGG+CGG 0.585261 7:+85836328 None:intergenic
GGTGCCATTCCTGGATGCGG+TGG 0.587789 7:+85835347 None:intergenic
TGTTCCTAGGAATGATAAGC+TGG 0.588162 7:-85834808 MsaT039196.1:CDS
GCATGTGATTGATAATTCGC+CGG 0.589032 7:-85836086 MsaT039196.1:CDS
AGATAATCATCAGTCTCCGA+CGG 0.590359 7:+85836148 None:intergenic
GGTTTCTGCTGAACAAAGAA+GGG 0.591609 7:-85834604 MsaT039196.1:CDS
GAGTGAGAGTAAGAAGAGTG+AGG 0.592637 7:-85835201 MsaT039196.1:CDS
GATAATCATCAGTCTCCGAC+GGG 0.596708 7:+85836149 None:intergenic
CTTGTTGATCCCAAAGAGGT+AGG 0.597487 7:-85833613 MsaT039196.1:CDS
AACCTCGGAATCGGAACCAA+AGG 0.604998 7:+85835263 None:intergenic
GAAAGGGAAGAGTCTTCGAA+TGG 0.607622 7:-85835896 MsaT039196.1:CDS
TGGCGATGTTGATGGCATGA+TGG 0.608428 7:-85833587 MsaT039196.1:CDS
GAAGCCTCAGCCAACTGCTG+CGG 0.610900 7:-85835240 MsaT039196.1:CDS
ATGCAACAGTGGTTTCGTGA+AGG 0.612420 7:-85834516 MsaT039196.1:CDS
GAATGAATCTGGAAGGAATG+GGG 0.612489 7:-85834982 MsaT039196.1:CDS
GATCCCAAAGAGGTAGGAGA+TGG 0.616124 7:-85833607 MsaT039196.1:CDS
CTGGAAGGAATGGGGAAGCG+GGG 0.617811 7:-85834974 MsaT039196.1:CDS
GAGGAAGAAGCATTATGTGG+AGG 0.618127 7:-85835522 MsaT039196.1:CDS
CTGTCACCAAAGGAGAAACA+CGG 0.620177 7:+85833485 None:intergenic
AACACCAGGACTCTGATCAC+CGG 0.620315 7:+85836042 None:intergenic
GTATGAAGCCATGAATTCGC+CGG 0.621033 7:-85835831 MsaT039196.1:CDS
GTGCCATTCCTGGATGCGGT+GGG 0.621076 7:+85835348 None:intergenic
TGTCACCAAAGGAGAAACAC+GGG 0.626669 7:+85833486 None:intergenic
TGGCTGAGAATGCTACACTT+AGG 0.630909 7:-85835430 MsaT039196.1:CDS
AAATACTGAAAATTCTTACA+GGG 0.633557 7:-85835918 MsaT039196.1:CDS
TGGCACCTATGCCTTATGCA+TGG 0.634382 7:-85835331 MsaT039196.1:CDS
GAACCTCGAAATGTAGTAGG+AGG 0.634877 7:-85835682 MsaT039196.1:CDS
TGTGCTTGTTGATCCCAAAG+AGG 0.635244 7:-85833617 MsaT039196.1:CDS
CCAAACTTAAAATCTACCAA+AGG 0.635471 7:+85835104 None:intergenic
CAAACATAAGCTGTCACCAA+AGG 0.638493 7:+85833475 None:intergenic
TTCCAGGAAGTGGATCTGGG+AGG 0.639667 7:+85833722 None:intergenic
TCTCACCGTTCAACCACCGC+CGG 0.639884 7:-85836344 MsaT039196.1:CDS
TCAACATCCGAATGTGTACA+GGG 0.639982 7:-85834625 MsaT039196.1:CDS
GAAAGAGGATGTGAAATTGG+AGG 0.644180 7:-85835771 MsaT039196.1:CDS
GATCTCGATTTCAACGACTA+CGG 0.647229 7:-85836292 MsaT039196.1:CDS
ATGGCATCTCAAGATGCTCA+GGG 0.649184 7:-85834732 MsaT039196.1:CDS
CTCGATTTCAACGACTACGG+TGG 0.651643 7:-85836289 MsaT039196.1:CDS
TATGGCTAGTGAGAAAGCCA+TGG 0.652273 7:-85834751 MsaT039196.1:CDS
ACACTTAGGCAACAATTGAG+TGG 0.653994 7:-85835416 MsaT039196.1:CDS
ACATACAAAGAAGCAAGCAA+TGG 0.658210 7:+85834828 None:intergenic
GGCATCCATGCATAAGGCAT+AGG 0.660606 7:+85835326 None:intergenic
AAGCCATGAATTCGCCGGAG+AGG 0.660751 7:-85835826 MsaT039196.1:CDS
AAAGAGGATGTGAAATTGGA+GGG 0.661470 7:-85835770 MsaT039196.1:CDS
ACGTGATTTCGAAATCGCCA+AGG 0.661829 7:+85836197 None:intergenic
AGAGTCAAATGAAGGAAGAG+CGG 0.665532 7:+85836252 None:intergenic
CTGATGGTAAAATGCAACAG+TGG 0.665578 7:-85834527 MsaT039196.1:CDS
AGATAATCTCCCTATCCCGT+CGG 0.672222 7:-85836164 MsaT039196.1:CDS
GGAGGTCGTTGTCGATCGAG+AGG 0.674037 7:-85835664 MsaT039196.1:CDS
TTAACAACATAAGGAGCACA+GGG 0.677664 7:+85835305 None:intergenic
TGGATGCGGTGGGTACATCG+GGG 0.678733 7:+85835358 None:intergenic
AAAGGAACCTGAGAACCTTG+AGG 0.689564 7:+85835281 None:intergenic
AAGTATGTGACTTACTCATG+TGG 0.694107 7:-85833514 MsaT039196.1:CDS
CTTAGGCAACAATTGAGTGG+TGG 0.698725 7:-85835413 MsaT039196.1:CDS
AACTTCGGGAATAGCCAATG+CGG 0.702448 7:+85834662 None:intergenic
TGGCATCTCAAGATGCTCAG+GGG 0.720143 7:-85834731 MsaT039196.1:CDS
AAATCGAGATCAGACGACGG+TGG 0.735503 7:+85836304 None:intergenic
GTCACCAAAGGAGAAACACG+GGG 0.765380 7:+85833487 None:intergenic
TTGAAATCGAGATCAGACGA+CGG 0.786582 7:+85836301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 85833474 85836380 85833474 ID=MsaG039196
Chr7 mRNA 85833474 85836380 85833474 ID=MsaT039196.1;Parent=MsaG039196
Chr7 exon 85833474 85833907 85833474 ID=MsaT039196.1.exon2;Parent=MsaT039196.1
Chr7 CDS 85833474 85833907 85833474 ID=cds.MsaT039196.1;Parent=MsaT039196.1
Chr7 exon 85834508 85836380 85834508 ID=MsaT039196.1.exon1;Parent=MsaT039196.1
Chr7 CDS 85834508 85836380 85834508 ID=cds.MsaT039196.1;Parent=MsaT039196.1
Gene Sequence

>MsaT039196.1

ATGGCTGATTCAATTCTCACCGTTCAACCACCGCCGGAACAACCACCTGAACAACCACCGTCGTCTGATCTCGATTTCAACGACTACGGTGGCGAATTCAACAACACCGCTCTTCCTTCATTTGACTCTTTCTTCAATGATTCAGATCCCGATCTCGATTTCCTTGGCGATTTCGAAATCACGTTTGATGATCTAGATAATCTCCCTATCCCGTCGGAGACTGATGATTATCTTTTTCATGATGCATGCAACGCTGATGGTGTTCCGATTTCGCATGTGATTGATAATTCGCCGGAATCAGGTGCTTCTGTGGTTTCCGGTGATCAGAGTCCTGGTGTTTCTAGGTTTTTGAATTTGGATTCAGTTGCGGATGATGATGAGAAAGAGAATTCAGTTGATGTGAAAGTTTTGAGCTTTCCGTCACCGGAGACTGAAAATGAAAATACTGAAAATTCTTACAGGGAAAGGGAAGAGTCTTCGAATGGACCTGTTTCGTCTCAGGGATCGGGGAACGGTGGATCGGGTGTGTATGAAGCCATGAATTCGCCGGAGAGGGATGTTTCATCTTTTCATGAAAATGAAAATGTGAAAGAGGATGTGAAATTGGAGGGAAGTGTTGTTAAAGGCTGTGATCTGAAGAGGAAGAAAGAGAATAGCTATGAAAGTGCTGAGAATCGAACCTCGAAATGTAGTAGGAGGTCGTTGTCGATCGAGAGGACGGAACAACAACAGTTTCAACAACAAGCTCAATCTGGTTTTGATGGAATTGAAGATGAGGATGAGAAGAGGAAAGCAAGGTTGATGAGGAATAGAGAAAGTGCACAGCTTTCAAGGCAGAGGAAGAAGCATTATGTGGAGGAGCTTGAGGAGAAAGTGAGATCAATGCATTCAACAATTACTGATTTAAGTAGTAAGATTACTTATGTAATGGCTGAGAATGCTACACTTAGGCAACAATTGAGTGGTGGTGTGATGTGTCCACCACCACCACCACCTGGTGCCCCGATGTACCCACCGCATCCAGGAATGGCACCTATGCCTTATGCATGGATGCCCTGTGCTCCTTATGTTGTTAAACCTCAAGGTTCTCAGGTTCCTTTGGTTCCGATTCCGAGGTTGAAGCCTCAGCCAACTGCTGCGGCTTCGAAGAGTAAAAAGAGTGAGAGTAAGAAGAGTGAGGTGAAAACTAAGAAAGTTGCTAGTATTAGTTTGTTGGGTTTGTTTTTCTGTATCATGCTTTTTGGTGGACTTGTTCCTTTGGTAGATTTTAAGTTTGGAGGTTTAGTGGATAATGTTTCTGGTAGGTCTAGTTATGTTAGTGATAGATGGTTTTATGGTCATGGTGGAGGGAAGATTTGGCCTGTAAATGGTCATATGAATGAATCTGGAAGGAATGGGGAAGCGGGGTTTCCGAATGGAAGGTTTGGTATTTCTGATAGGAATAATTATGAAAGAGGGAGGATACTAGGTGAAGAAATGAATGAGCCGAAAGACTCAAGTTGTTTTGGTCATCGAGACAATGCTAGCGAGCCATTGCTTGCTTCTTTGTATGTTCCTAGGAATGATAAGCTGGTGAAGATCGATGGAAACTTGATAATCCATTCTATTATGGCTAGTGAGAAAGCCATGGCATCTCAAGATGCTCAGGGGAAGAAGGAGAAGAGTGAAACTGGTCTTGCAATTCCTAAAGATAATTCCGCATTGGCTATTCCCGAAGTTGGAAGAAATAGAGGTCAACATCCGAATGTGTACAGGGTTTCTGCTGAACAAAGAAGGGCTATTGGCTCTGGTTCAACTAAAACCTTGAAGGACCATATGAAGTCTTCTGCAACTGATGGTAAAATGCAACAGTGGTTTCGTGAAGGAATTGCAGGTCCAATGCTAAGTTCTGGCATGTGTACTGAAGTTTTTCAGTTTGATGTTTCTCCAACTCCTGGAGCAATAGTTCCAGCAGCAGCAGTGGCCAATATTTCTTCTGAAACCCGCCAAAATTCCACAACTGTCAACAAGAGCAGGAACAGAAGAATCCTCCACACCCTCCCAGATCCACTTCCTGGAACCCGTCTGAACATAACTGAAGAACGTGCAAGAAATTTGCCAAAAGACCACCTGCCCGGCAATAAATCATCTATGGTCGTTTCTGTGCTTGTTGATCCCAAAGAGGTAGGAGATGGCGATGTTGATGGCATGATGGCTCCGAAGTCGCTCTCTCGGATTTTCGTGGTTGTTTTAATCGACAGTGTCAAGTATGTGACTTACTCATGTGGTCTTCCCCGTGTTTCTCCTTTGGTGACAGCTTATGTTTGA

Protein sequence

>MsaT039196.1

MADSILTVQPPPEQPPEQPPSSDLDFNDYGGEFNNTALPSFDSFFNDSDPDLDFLGDFEITFDDLDNLPIPSETDDYLFHDACNADGVPISHVIDNSPESGASVVSGDQSPGVSRFLNLDSVADDDEKENSVDVKVLSFPSPETENENTENSYREREESSNGPVSSQGSGNGGSGVYEAMNSPERDVSSFHENENVKEDVKLEGSVVKGCDLKRKKENSYESAENRTSKCSRRSLSIERTEQQQFQQQAQSGFDGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITDLSSKITYVMAENATLRQQLSGGVMCPPPPPPGAPMYPPHPGMAPMPYAWMPCAPYVVKPQGSQVPLVPIPRLKPQPTAAASKSKKSESKKSEVKTKKVASISLLGLFFCIMLFGGLVPLVDFKFGGLVDNVSGRSSYVSDRWFYGHGGGKIWPVNGHMNESGRNGEAGFPNGRFGISDRNNYERGRILGEEMNEPKDSSCFGHRDNASEPLLASLYVPRNDKLVKIDGNLIIHSIMASEKAMASQDAQGKKEKSETGLAIPKDNSALAIPEVGRNRGQHPNVYRVSAEQRRAIGSGSTKTLKDHMKSSATDGKMQQWFREGIAGPMLSSGMCTEVFQFDVSPTPGAIVPAAAVANISSETRQNSTTVNKSRNRRILHTLPDPLPGTRLNITEERARNLPKDHLPGNKSSMVVSVLVDPKEVGDGDVDGMMAPKSLSRIFVVVLIDSVKYVTYSCGLPRVSPLVTAYV*