Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG039196 | XP_003624906.1 | 97.526 | 768 | 16 | 2 | 1 | 768 | 1 | 765 | 0.0 | 1534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG039196 | sp|O22208|BZP17_ARATH | 49.339 | 756 | 286 | 24 | 32 | 759 | 26 | 712 | 4.64e-171 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG039196 | tr|A2Q6G9|A2Q6G9_MEDTR | 97.526 | 768 | 16 | 2 | 1 | 768 | 1 | 765 | 0.0 | 1534 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG039196 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG000578 | MsaG039196 | 0.817405 | 5.835986e-52 | 1.199602e-49 |
| MsaG000514 | MsaG039196 | 0.814323 | 2.821127e-51 | 5.361232e-49 |
| MsaG000982 | MsaG039196 | 0.833487 | 9.405148e-56 | 3.011831e-53 |
| MsaG001001 | MsaG039196 | 0.821546 | 6.703213e-53 | 1.535820e-50 |
| MsaG002021 | MsaG039196 | 0.801912 | 1.207391e-48 | 1.704654e-46 |
| MsaG002027 | MsaG039196 | 0.827738 | 2.368184e-54 | 6.428649e-52 |
| MsaG003612 | MsaG039196 | 0.801168 | 1.713153e-48 | 2.378115e-46 |
| MsaG003683 | MsaG039196 | 0.801212 | 1.677615e-48 | 2.331086e-46 |
| MsaG003929 | MsaG039196 | 0.816986 | 7.242053e-52 | 1.472644e-49 |
| MsaG004037 | MsaG039196 | 0.848472 | 1.135857e-59 | 5.843231e-57 |
| MsaG004293 | MsaG039196 | 0.827713 | 2.400045e-54 | 6.510672e-52 |
| MsaG004468 | MsaG039196 | 0.800498 | 2.343242e-48 | 3.204004e-46 |
| MsaG004479 | MsaG039196 | 0.835884 | 2.362738e-56 | 8.126590e-54 |
| MsaG004760 | MsaG039196 | 0.830804 | 4.304114e-55 | 1.274590e-52 |
| MsaG004793 | MsaG039196 | 0.821242 | 7.870581e-53 | 1.788881e-50 |
| MsaG004910 | MsaG039196 | 0.815812 | 1.322335e-51 | 2.609321e-49 |
| MsaG004929 | MsaG039196 | 0.814599 | 2.452928e-51 | 4.693832e-49 |
| MsaG005329 | MsaG039196 | 0.811076 | 1.437773e-50 | 2.520629e-48 |
| MsaG005401 | MsaG039196 | 0.802905 | 7.557295e-49 | 1.091454e-46 |
| MsaG005683 | MsaG039196 | 0.843086 | 3.241229e-58 | 1.395625e-55 |
| MsaG005698 | MsaG039196 | 0.824516 | 1.370803e-53 | 3.402961e-51 |
| MsaG005642 | MsaG039196 | 0.828010 | 2.038389e-54 | 5.575724e-52 |
| MsaG006133 | MsaG039196 | 0.837377 | 9.878626e-57 | 3.554536e-54 |
| MsaG006046 | MsaG039196 | 0.814577 | 2.480097e-51 | 4.743202e-49 |
| MsaG006051 | MsaG039196 | 0.815443 | 1.596555e-51 | 3.121084e-49 |
| MsaG006334 | MsaG039196 | 0.819038 | 2.502481e-52 | 5.366237e-50 |
| MsaG006561 | MsaG039196 | 0.851136 | 2.062955e-60 | 1.162724e-57 |
| MsaG007145 | MsaG039196 | 0.829424 | 9.310015e-55 | 2.650243e-52 |
| MsaG007555 | MsaG039196 | 0.818287 | 3.698379e-52 | 7.776515e-50 |
| MsaG008201 | MsaG039196 | 0.838674 | 4.599852e-57 | 1.722752e-54 |
| MsaG008615 | MsaG039196 | 0.823274 | 2.671289e-53 | 6.411585e-51 |
| MsaG009078 | MsaG039196 | 0.804828 | 3.025523e-49 | 4.568577e-47 |
| MsaG009059 | MsaG039196 | 0.836183 | 1.985694e-56 | 6.891532e-54 |
| MsaG009068 | MsaG039196 | 0.853063 | 5.877975e-61 | 3.544523e-58 |
| MsaG009265 | MsaG039196 | 0.816611 | 8.784488e-52 | 1.769031e-49 |
| MsaG009657 | MsaG039196 | 0.824152 | 1.667891e-53 | 4.099482e-51 |
| MsaG009703 | MsaG039196 | 0.867506 | 2.622171e-65 | 2.740978e-62 |
| MsaG011010 | MsaG039196 | 0.805410 | 2.287929e-49 | 3.501801e-47 |
| MsaG011528 | MsaG039196 | 0.820873 | 9.566371e-53 | 2.153082e-50 |
| MsaG011947 | MsaG039196 | 0.825408 | 8.462418e-54 | 2.152660e-51 |
| MsaG011971 | MsaG039196 | 0.839920 | 2.193272e-57 | 8.540705e-55 |
| MsaG012160 | MsaG039196 | 0.815861 | 1.289931e-51 | 2.548466e-49 |
| MsaG012186 | MsaG039196 | 0.836695 | 1.472888e-56 | 5.191238e-54 |
| MsaG012263 | MsaG039196 | 0.805802 | 1.894819e-49 | 2.926814e-47 |
| MsaG013374 | MsaG039196 | 0.828647 | 1.433047e-54 | 3.990659e-52 |
| MsaG015496 | MsaG039196 | 0.804337 | 3.825156e-49 | 5.710782e-47 |
| MsaG015978 | MsaG039196 | 0.805985 | 1.735202e-49 | 2.691757e-47 |
| MsaG016293 | MsaG039196 | 0.880764 | 8.880342e-70 | 1.661397e-66 |
| MsaG016571 | MsaG039196 | 0.819419 | 2.051613e-52 | 4.443606e-50 |
| MsaG017058 | MsaG039196 | 0.811837 | 9.840379e-51 | 1.757700e-48 |
| MsaG017109 | MsaG039196 | 0.813484 | 4.310681e-51 | 8.021383e-49 |
| MsaG017173 | MsaG039196 | 0.808066 | 6.325549e-50 | 1.031023e-47 |
| MsaG017441 | MsaG039196 | 0.817661 | 5.114231e-52 | 1.058129e-49 |
| MsaG018202 | MsaG039196 | 0.849830 | 4.779887e-60 | 2.575550e-57 |
| MsaG018367 | MsaG039196 | 0.820116 | 1.423940e-52 | 3.141499e-50 |
| MsaG018496 | MsaG039196 | 0.838475 | 5.175521e-57 | 1.926290e-54 |
| MsaG018593 | MsaG039196 | 0.835687 | 2.648639e-56 | 9.056007e-54 |
| MsaG018648 | MsaG039196 | 0.825871 | 6.577810e-54 | 1.695048e-51 |
| MsaG018741 | MsaG039196 | 0.821775 | 5.936814e-53 | 1.368511e-50 |
| MsaG018813 | MsaG039196 | 0.809460 | 3.194707e-50 | 5.385231e-48 |
| MsaG018834 | MsaG039196 | 0.804161 | 4.160835e-49 | 6.186544e-47 |
| MsaG018961 | MsaG039196 | 0.850238 | 3.680315e-60 | 2.010751e-57 |
| MsaG019303 | MsaG039196 | 0.802807 | 7.916776e-49 | 1.140783e-46 |
| MsaG019654 | MsaG039196 | 0.804089 | 4.305208e-49 | 6.390794e-47 |
| MsaG019727 | MsaG039196 | 0.836321 | 1.832370e-56 | 6.386057e-54 |
| MsaG019862 | MsaG039196 | 0.840588 | 1.470340e-57 | 5.846793e-55 |
| MsaG020486 | MsaG039196 | 0.824133 | 1.685179e-53 | 4.139924e-51 |
| MsaG020731 | MsaG039196 | 0.816771 | 8.092588e-52 | 1.636445e-49 |
| MsaG020870 | MsaG039196 | 0.872910 | 4.543299e-67 | 5.962152e-64 |
| MsaG020963 | MsaG039196 | 0.846455 | 4.045287e-59 | 1.945004e-56 |
| MsaG021448 | MsaG039196 | 0.803748 | 5.064536e-49 | 7.458551e-47 |
| MsaG022065 | MsaG039196 | 0.810856 | 1.603437e-50 | 2.795932e-48 |
| MsaG022079 | MsaG039196 | 0.816101 | 1.140807e-51 | 2.267651e-49 |
| MsaG023609 | MsaG039196 | 0.808330 | 5.559363e-50 | 9.119099e-48 |
| MsaG023654 | MsaG039196 | 0.804199 | 4.085470e-49 | 6.079918e-47 |
| MsaG023762 | MsaG039196 | 0.809176 | 3.673769e-50 | 6.150121e-48 |
| MsaG025428 | MsaG039196 | 0.831762 | 2.508486e-55 | 7.638757e-53 |
| MsaG025651 | MsaG039196 | 0.806100 | 1.641632e-49 | 2.553667e-47 |
| MsaG026015 | MsaG039196 | 0.805446 | 2.249136e-49 | 3.445294e-47 |
| MsaG026777 | MsaG039196 | 0.805419 | 2.278311e-49 | 3.487758e-47 |
| MsaG026841 | MsaG039196 | 0.813074 | 5.298678e-51 | 9.759413e-49 |
| MsaG026860 | MsaG039196 | 0.807804 | 7.186937e-50 | 1.164080e-47 |
| MsaG027361 | MsaG039196 | 0.805667 | 2.022417e-49 | 3.114008e-47 |
| MsaG027378 | MsaG039196 | 0.801513 | 1.457156e-48 | 2.038633e-46 |
| MsaG027732 | MsaG039196 | 0.837004 | 1.229289e-56 | 4.373160e-54 |
| MsaG027766 | MsaG039196 | 0.844931 | 1.043482e-58 | 4.771632e-56 |
| MsaG028001 | MsaG039196 | 0.826302 | 5.202527e-54 | 1.356725e-51 |
| MsaG028080 | MsaG039196 | 0.842667 | 4.184382e-58 | 1.777738e-55 |
| MsaG028246 | MsaG039196 | 0.860004 | 5.488566e-63 | 4.267811e-60 |
| MsaG028530 | MsaG039196 | 0.834286 | 5.949867e-56 | 1.950875e-53 |
| MsaG028698 | MsaG039196 | 0.800795 | 2.039955e-48 | 2.808158e-46 |
| MsaG028855 | MsaG039196 | 0.813256 | 4.833591e-51 | 8.943213e-49 |
| MsaG029335 | MsaG039196 | 0.806449 | 1.387243e-49 | 2.175913e-47 |
| MsaG029519 | MsaG039196 | 0.819819 | 1.664402e-52 | 3.642878e-50 |
| MsaG029661 | MsaG039196 | 0.831843 | 2.395162e-55 | 7.310948e-53 |
| MsaG029763 | MsaG039196 | 0.809263 | 3.520306e-50 | 5.905390e-48 |
| MsaG030327 | MsaG039196 | 0.854370 | 2.483818e-61 | 1.569118e-58 |
| MsaG030359 | MsaG039196 | 0.851810 | 1.332243e-60 | 7.687473e-58 |
| MsaG030546 | MsaG039196 | 0.803625 | 5.368716e-49 | 7.883802e-47 |
| MsaG030955 | MsaG039196 | 0.845786 | 6.141250e-59 | 2.887888e-56 |
| MsaG032068 | MsaG039196 | 0.836995 | 1.235740e-56 | 4.394908e-54 |
| MsaG032448 | MsaG039196 | 0.806901 | 1.114581e-49 | 1.766856e-47 |
| MsaG033298 | MsaG039196 | 0.870765 | 2.322534e-66 | 2.779590e-63 |
| MsaG033519 | MsaG039196 | 0.812356 | 7.595294e-51 | 1.374142e-48 |
| MsaG033694 | MsaG039196 | 0.832550 | 1.604751e-55 | 4.999530e-53 |
| MsaG033811 | MsaG039196 | 0.815917 | 1.253751e-51 | 2.480536e-49 |
| MsaG034044 | MsaG039196 | 0.825126 | 9.854809e-54 | 2.487597e-51 |
| MsaG034132 | MsaG039196 | 0.831023 | 3.804011e-55 | 1.133634e-52 |
| MsaG034253 | MsaG039196 | 0.817017 | 7.128660e-52 | 1.450754e-49 |
| MsaG034337 | MsaG039196 | 0.808756 | 4.514784e-50 | 7.482293e-48 |
| MsaG035404 | MsaG039196 | 0.844002 | 1.849696e-58 | 8.201558e-56 |
| MsaG036047 | MsaG039196 | 0.855920 | 8.846267e-62 | 5.908025e-59 |
| MsaG036251 | MsaG039196 | 0.853522 | 4.348677e-61 | 2.665014e-58 |
| MsaG038016 | MsaG039196 | 0.852727 | 7.325207e-61 | 4.365137e-58 |
| MsaG039160 | MsaG039196 | 0.858259 | 1.819419e-62 | 1.324721e-59 |
| MsaG039196 | MsaG039679 | 0.812011 | 9.024713e-51 | 1.618859e-48 |
| MsaG039196 | MsaG039932 | 0.832845 | 1.356793e-55 | 4.263392e-53 |
| MsaG039196 | MsaG041112 | 0.806846 | 1.144642e-49 | 1.812146e-47 |
| MsaG039196 | MsaG041116 | 0.827147 | 3.275576e-54 | 8.745658e-52 |
| MsaG039196 | MsaG041271 | 0.828131 | 1.906349e-54 | 5.232517e-52 |
| MsaG039196 | MsaG041905 | 0.805310 | 2.400270e-49 | 3.665234e-47 |
| MsaG039196 | MsaG041931 | 0.818527 | 3.264811e-52 | 6.907906e-50 |
| MsaG039196 | MsaG042103 | 0.824173 | 1.648509e-53 | 4.054213e-51 |
| MsaG039196 | MsaG043190 | 0.808632 | 4.797220e-50 | 7.926396e-48 |
| MsaG039196 | MsaG044885 | 0.818591 | 3.158217e-52 | 6.693406e-50 |
| MsaG039196 | MsaG045109 | 0.864981 | 1.642265e-64 | 1.550401e-61 |
| MsaG039196 | MsaG045222 | 0.800845 | 1.992799e-48 | 2.746250e-46 |
| MsaG039196 | MsaG045452 | 0.820786 | 1.001454e-52 | 2.248758e-50 |
| MsaG039196 | MsaG045654 | 0.800683 | 2.148967e-48 | 2.950821e-46 |
| MsaG039196 | MsaG045769 | 0.828573 | 1.493067e-54 | 4.149214e-52 |
| MsaG039196 | MsaG045974 | 0.828751 | 1.353196e-54 | 3.779034e-52 |
| MsaG039196 | MsaG046251 | 0.803977 | 4.542140e-49 | 6.724675e-47 |
| MsaG039196 | MsaG046506 | 0.813517 | 4.239133e-51 | 7.895029e-49 |
| MsaG039196 | MsaG046546 | 0.836829 | 1.361831e-56 | 4.819277e-54 |
| MsaG039196 | MsaG046770 | 0.879412 | 2.679175e-69 | 4.706445e-66 |
| MsaG039196 | MsaG046861 | 0.805264 | 2.453847e-49 | 3.743021e-47 |
| MsaG039196 | MsaG046978 | 0.856233 | 7.170736e-62 | 4.845076e-59 |
| MsaG039196 | MsaG047014 | 0.801642 | 1.371440e-48 | 1.924370e-46 |
| MsaG039196 | MsaG002467 | 0.810382 | 2.027677e-50 | 3.495173e-48 |
| MsaG039196 | MsaG004907 | 0.819515 | 1.951416e-52 | 4.237080e-50 |
| MsaG039196 | MsaG001986 | 0.851523 | 1.605553e-60 | 9.170931e-58 |
| MsaG039196 | MsaG003009 | 0.834079 | 6.700919e-56 | 2.183455e-53 |
| MsaG039196 | MsaG001106 | 0.816825 | 7.867251e-52 | 1.593107e-49 |
| MsaG039196 | MsaG003742 | 0.839121 | 3.528540e-57 | 1.340054e-54 |
| MsaG039196 | MsaG008251 | 0.805235 | 2.488288e-49 | 3.793129e-47 |
| MsaG039196 | MsaG009266 | 0.806812 | 1.163863e-49 | 1.841113e-47 |
| MsaG039196 | MsaG008311 | 0.832368 | 1.778879e-55 | 5.512795e-53 |
| MsaG039196 | MsaG011672 | 0.806709 | 1.223029e-49 | 1.930094e-47 |
| MsaG039196 | MsaG014180 | 0.836777 | 1.404175e-56 | 4.961163e-54 |
| MsaG039196 | MsaG013399 | 0.801065 | 1.797200e-48 | 2.488972e-46 |
| MsaG039196 | MsaG011676 | 0.834228 | 6.149719e-56 | 2.012873e-53 |
| MsaG039196 | MsaG015507 | 0.836367 | 1.783910e-56 | 6.226001e-54 |
| MsaG039196 | MsaG019652 | 0.804202 | 4.080494e-49 | 6.072879e-47 |
| MsaG039196 | MsaG019831 | 0.821294 | 7.657728e-53 | 1.742867e-50 |
| MsaG039196 | MsaG026431 | 0.816691 | 8.428762e-52 | 1.700917e-49 |
| MsaG039196 | MsaG029571 | 0.806135 | 1.614116e-49 | 2.512925e-47 |
| MsaG039196 | MsaG030315 | 0.829375 | 9.565000e-55 | 2.719006e-52 |
| MsaG039196 | MsaG031311 | 0.809937 | 2.525604e-50 | 4.306414e-48 |
| MsaG039196 | MsaG032695 | 0.815604 | 1.470701e-51 | 2.886847e-49 |
| MsaG039196 | MsaG031291 | 0.851891 | 1.264332e-60 | 7.316403e-58 |
| MsaG039196 | MsaG033087 | 0.817422 | 5.785751e-52 | 1.189791e-49 |
| MsaG039196 | MsaG040848 | 0.824185 | 1.638339e-53 | 4.030483e-51 |
| MsaG039196 | MsaG036784 | 0.819571 | 1.894900e-52 | 4.120326e-50 |
| MsaG039196 | MsaG036873 | 0.822184 | 4.776723e-53 | 1.113214e-50 |
| MsaG039196 | MsaG036524 | 0.811252 | 1.317183e-50 | 2.319180e-48 |
| MsaG039196 | MsaG036751 | 0.827193 | 3.193962e-54 | 8.538701e-52 |
| MsaG039196 | MsaG042833 | 0.807728 | 7.458324e-50 | 1.205841e-47 |
| MsaG039196 | MsaG042291 | 0.820405 | 1.223605e-52 | 2.720177e-50 |
| MsaG039196 | MsaG042301 | 0.804840 | 3.007076e-49 | 4.542104e-47 |
| MsaG039196 | MsaG043146 | 0.800823 | 2.013484e-48 | 2.773387e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG039196 | MtrunA17_Chr7g0255671 | 97.526 | 768 | 16 | 2 | 1 | 768 | 1 | 765 | 0.0 | 1534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG039196 | AT2G40950.1 | 49.339 | 756 | 286 | 24 | 32 | 759 | 26 | 712 | 4.72e-172 | 512 |
| MsaG039196 | AT3G56660.1 | 43.704 | 540 | 228 | 14 | 231 | 759 | 137 | 611 | 2.23e-120 | 375 |
| MsaG039196 | AT3G10800.1 | 43.082 | 636 | 271 | 19 | 144 | 759 | 103 | 667 | 2.96e-117 | 369 |
Find 217 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATAATCCATTCTATTA+TGG | 0.219261 | 7:-85834769 | MsaT039196.1:CDS |
| GGTTTAGTGGATAATGTTTC+TGG | 0.228446 | 7:-85835080 | MsaT039196.1:CDS |
| TGTTGACAGTTGTGGAATTT+TGG | 0.245109 | 7:+85833773 | None:intergenic |
| TCAGGTGCTTCTGTGGTTTC+CGG | 0.251766 | 7:-85836061 | MsaT039196.1:CDS |
| ATCAGAGTCCTGGTGTTTCT+AGG | 0.274337 | 7:-85836036 | MsaT039196.1:CDS |
| CCGAAAGACTCAAGTTGTTT+TGG | 0.282431 | 7:-85834873 | MsaT039196.1:CDS |
| CTGGATGCGGTGGGTACATC+GGG | 0.292468 | 7:+85835357 | None:intergenic |
| ATCGCCATCTCCTACCTCTT+TGG | 0.292842 | 7:+85833603 | None:intergenic |
| TTGGAGGGAAGTGTTGTTAA+AGG | 0.298541 | 7:-85835755 | MsaT039196.1:CDS |
| AAAATACTGAAAATTCTTAC+AGG | 0.307136 | 7:-85835919 | MsaT039196.1:CDS |
| CCTCTATTTCTTCCAACTTC+GGG | 0.314759 | 7:+85834648 | None:intergenic |
| ACCCTCCCAGATCCACTTCC+TGG | 0.322326 | 7:-85833724 | MsaT039196.1:CDS |
| TTGCCGGGCAGGTGGTCTTT+TGG | 0.323779 | 7:+85833661 | None:intergenic |
| GCACCAGGTGGTGGTGGTGG+TGG | 0.337944 | 7:+85835380 | None:intergenic |
| GAATGGACCTGTTTCGTCTC+AGG | 0.340862 | 7:-85835879 | MsaT039196.1:CDS |
| TCAAGGTTCTCAGGTTCCTT+TGG | 0.340949 | 7:-85835279 | MsaT039196.1:CDS |
| TCAGACGACGGTGGTTGTTC+AGG | 0.344260 | 7:+85836313 | None:intergenic |
| TCATTCATATGACCATTTAC+AGG | 0.346777 | 7:+85834999 | None:intergenic |
| GCGGGTTTCAGAAGAAATAT+TGG | 0.348033 | 7:+85833795 | None:intergenic |
| CGGGTTCCAGGAAGTGGATC+TGG | 0.348649 | 7:+85833718 | None:intergenic |
| TTATCAATCACATGCGAAAT+CGG | 0.348829 | 7:+85836094 | None:intergenic |
| ATCCCTCTCCGGCGAATTCA+TGG | 0.349100 | 7:+85835823 | None:intergenic |
| GCCAATGCGGAATTATCTTT+AGG | 0.353133 | 7:+85834675 | None:intergenic |
| GAGAAAGTGCACAGCTTTCA+AGG | 0.360135 | 7:-85835547 | MsaT039196.1:CDS |
| GGGAAGATTTGGCCTGTAAA+TGG | 0.365839 | 7:-85835011 | MsaT039196.1:CDS |
| GGTTGTTCAGGTGGTTGTTC+CGG | 0.372524 | 7:+85836325 | None:intergenic |
| CTAGTTATGTTAGTGATAGA+TGG | 0.373574 | 7:-85835052 | MsaT039196.1:CDS |
| GAAGGTTTGGTATTTCTGAT+AGG | 0.374820 | 7:-85834941 | MsaT039196.1:CDS |
| GGGGCACCAGGTGGTGGTGG+TGG | 0.375258 | 7:+85835377 | None:intergenic |
| GTCATGGTGGAGGGAAGATT+TGG | 0.376373 | 7:-85835022 | MsaT039196.1:CDS |
| TCGCCATCTCCTACCTCTTT+GGG | 0.378134 | 7:+85833604 | None:intergenic |
| TGTGAAAGAGGATGTGAAAT+TGG | 0.378389 | 7:-85835774 | MsaT039196.1:CDS |
| TCTTCCCCGTGTTTCTCCTT+TGG | 0.379638 | 7:-85833491 | MsaT039196.1:CDS |
| CCTGTTTCGTCTCAGGGATC+GGG | 0.383787 | 7:-85835872 | MsaT039196.1:CDS |
| TTTGATGTTTCTCCAACTCC+TGG | 0.394532 | 7:-85833844 | MsaT039196.1:CDS |
| ATTGATAATTCGCCGGAATC+AGG | 0.396736 | 7:-85836079 | MsaT039196.1:CDS |
| TACATCGGGGCACCAGGTGG+TGG | 0.397975 | 7:+85835371 | None:intergenic |
| GTTATGTTCAGACGGGTTCC+AGG | 0.403148 | 7:+85833706 | None:intergenic |
| GGATCGGGGAACGGTGGATC+GGG | 0.403786 | 7:-85835857 | MsaT039196.1:CDS |
| GACCATAGATGATTTATTGC+CGG | 0.403947 | 7:+85833645 | None:intergenic |
| TAAGGCATAGGTGCCATTCC+TGG | 0.404229 | 7:+85835338 | None:intergenic |
| ACCACAGAAGCACCTGATTC+CGG | 0.404825 | 7:+85836067 | None:intergenic |
| CCTTGAGGTTTAACAACATA+AGG | 0.407763 | 7:+85835296 | None:intergenic |
| CCAAAACAACTTGAGTCTTT+CGG | 0.407967 | 7:+85834873 | None:intergenic |
| GTTGCTAGTATTAGTTTGTT+GGG | 0.408388 | 7:-85835164 | MsaT039196.1:CDS |
| TTGCTTCTTTGTATGTTCCT+AGG | 0.410557 | 7:-85834821 | MsaT039196.1:CDS |
| AATGGTCATATGAATGAATC+TGG | 0.410603 | 7:-85834993 | MsaT039196.1:CDS |
| AGTTGCTAGTATTAGTTTGT+TGG | 0.413297 | 7:-85835165 | MsaT039196.1:CDS |
| TCTGGAAGGAATGGGGAAGC+GGG | 0.417527 | 7:-85834975 | MsaT039196.1:CDS |
| ACCTGTTTCGTCTCAGGGAT+CGG | 0.420552 | 7:-85835873 | MsaT039196.1:CDS |
| TGGTTTCGTGAAGGAATTGC+AGG | 0.423367 | 7:-85834507 | MsaT039196.1:intron |
| CCTGCTCTTGTTGACAGTTG+TGG | 0.423616 | 7:+85833765 | None:intergenic |
| CCTGGATGCGGTGGGTACAT+CGG | 0.426624 | 7:+85835356 | None:intergenic |
| GCTGAACAAAGAAGGGCTAT+TGG | 0.427676 | 7:-85834597 | MsaT039196.1:CDS |
| GCCCGGCAATAAATCATCTA+TGG | 0.427714 | 7:-85833647 | MsaT039196.1:CDS |
| TTTCAACAACAAGCTCAATC+TGG | 0.433911 | 7:-85835626 | MsaT039196.1:CDS |
| AAGAAGGAGAAGAGTGAAAC+TGG | 0.434906 | 7:-85834708 | MsaT039196.1:CDS |
| CATCAGTCTCCGACGGGATA+GGG | 0.439678 | 7:+85836155 | None:intergenic |
| ACCTCTATTTCTTCCAACTT+CGG | 0.441464 | 7:+85834647 | None:intergenic |
| TGTTAAACCTCAAGGTTCTC+AGG | 0.442420 | 7:-85835288 | MsaT039196.1:CDS |
| ATGAATGAATCTGGAAGGAA+TGG | 0.448209 | 7:-85834984 | MsaT039196.1:CDS |
| GAAGTGGATCTGGGAGGGTG+TGG | 0.450659 | 7:+85833728 | None:intergenic |
| CTGAAAATTCTTACAGGGAA+AGG | 0.454977 | 7:-85835913 | MsaT039196.1:CDS |
| TCATCAGTCTCCGACGGGAT+AGG | 0.456052 | 7:+85836154 | None:intergenic |
| TTCAGACGGGTTCCAGGAAG+TGG | 0.456378 | 7:+85833712 | None:intergenic |
| GGGATCGGGGAACGGTGGAT+CGG | 0.458209 | 7:-85835858 | MsaT039196.1:CDS |
| ACCATAGATGATTTATTGCC+GGG | 0.458374 | 7:+85833646 | None:intergenic |
| CCCGATCCCTGAGACGAAAC+AGG | 0.460311 | 7:+85835872 | None:intergenic |
| GTCAACATCCGAATGTGTAC+AGG | 0.460462 | 7:-85834626 | MsaT039196.1:CDS |
| TGAGGCTTCAACCTCGGAAT+CGG | 0.460632 | 7:+85835254 | None:intergenic |
| GGGTACATCGGGGCACCAGG+TGG | 0.461707 | 7:+85835368 | None:intergenic |
| CAAAGAAGGGCTATTGGCTC+TGG | 0.463181 | 7:-85834591 | MsaT039196.1:CDS |
| GAAGCCGCAGCAGTTGGCTG+AGG | 0.464585 | 7:+85835236 | None:intergenic |
| AGGATGAGAAGAGGAAAGCA+AGG | 0.465492 | 7:-85835583 | MsaT039196.1:CDS |
| GTAGGAGATGGCGATGTTGA+TGG | 0.465751 | 7:-85833595 | MsaT039196.1:CDS |
| CGACCTCCTACTACATTTCG+AGG | 0.468018 | 7:+85835679 | None:intergenic |
| ATCGGGGCACCAGGTGGTGG+TGG | 0.469118 | 7:+85835374 | None:intergenic |
| ATATTGGCCACTGCTGCTGC+TGG | 0.469399 | 7:+85833811 | None:intergenic |
| AGACTTCATATGGTCCTTCA+AGG | 0.470842 | 7:+85834557 | None:intergenic |
| TATGAAAGAGGGAGGATACT+AGG | 0.474635 | 7:-85834912 | MsaT039196.1:CDS |
| GGTGGGTACATCGGGGCACC+AGG | 0.476383 | 7:+85835365 | None:intergenic |
| CCTTATGTTGTTAAACCTCA+AGG | 0.476907 | 7:-85835296 | MsaT039196.1:CDS |
| GATCCCGATCTCGATTTCCT+TGG | 0.479477 | 7:-85836214 | MsaT039196.1:CDS |
| GCATTGGCTATTCCCGAAGT+TGG | 0.481462 | 7:-85834660 | MsaT039196.1:CDS |
| TGAAAATTCTTACAGGGAAA+GGG | 0.481829 | 7:-85835912 | MsaT039196.1:CDS |
| CCGATGTACCCACCGCATCC+AGG | 0.483203 | 7:-85835356 | MsaT039196.1:CDS |
| GGAACTATTGCTCCAGGAGT+TGG | 0.484476 | 7:+85833832 | None:intergenic |
| CATGGCATCTCAAGATGCTC+AGG | 0.484756 | 7:-85834733 | MsaT039196.1:CDS |
| GGGTTTCCGAATGGAAGGTT+TGG | 0.486157 | 7:-85834954 | MsaT039196.1:CDS |
| GCAGGTCCAATGCTAAGTTC+TGG | 0.487433 | 7:-85833889 | MsaT039196.1:intron |
| AATGGACCTGTTTCGTCTCA+GGG | 0.487929 | 7:-85835878 | MsaT039196.1:CDS |
| TCTCACTAGCCATAATAGAA+TGG | 0.490180 | 7:+85834760 | None:intergenic |
| TGGTTCAACTAAAACCTTGA+AGG | 0.490584 | 7:-85834571 | MsaT039196.1:CDS |
| CTCTTCGAAGCCGCAGCAGT+TGG | 0.491101 | 7:+85835230 | None:intergenic |
| ATCTGGAAGGAATGGGGAAG+CGG | 0.494855 | 7:-85834976 | MsaT039196.1:CDS |
| TGAATGAATCTGGAAGGAAT+GGG | 0.497476 | 7:-85834983 | MsaT039196.1:CDS |
| CAGTTGCAGAAGACTTCATA+TGG | 0.499404 | 7:+85834547 | None:intergenic |
| TCGTCTCAGGGATCGGGGAA+CGG | 0.500301 | 7:-85835866 | MsaT039196.1:CDS |
| GATAGGAATAATTATGAAAG+AGG | 0.503581 | 7:-85834924 | MsaT039196.1:CDS |
| GAAATACCAAACCTTCCATT+CGG | 0.504063 | 7:+85834948 | None:intergenic |
| AGAGGAAAGCAAGGTTGATG+AGG | 0.504690 | 7:-85835574 | MsaT039196.1:CDS |
| GTGGATCTGGGAGGGTGTGG+AGG | 0.505432 | 7:+85833731 | None:intergenic |
| CTGAGCATCTTGAGATGCCA+TGG | 0.508247 | 7:+85834734 | None:intergenic |
| TAGATGATTTATTGCCGGGC+AGG | 0.510261 | 7:+85833650 | None:intergenic |
| TTGCCAAAAGACCACCTGCC+CGG | 0.510449 | 7:-85833664 | MsaT039196.1:CDS |
| GGGTTTCTGCTGAACAAAGA+AGG | 0.511157 | 7:-85834605 | MsaT039196.1:CDS |
| TCAGGTGGTTGTTCCGGCGG+TGG | 0.514009 | 7:+85836331 | None:intergenic |
| GCATTATGTGGAGGAGCTTG+AGG | 0.515226 | 7:-85835513 | MsaT039196.1:CDS |
| GCTGCTGGAACTATTGCTCC+AGG | 0.515460 | 7:+85833826 | None:intergenic |
| TCAAGATGCTCAGGGGAAGA+AGG | 0.516725 | 7:-85834724 | MsaT039196.1:CDS |
| TGAAAATGAAAATGTGAAAG+AGG | 0.516780 | 7:-85835786 | MsaT039196.1:CDS |
| GCACAGGGCATCCATGCATA+AGG | 0.516883 | 7:+85835320 | None:intergenic |
| CCCGAAGTTGGAAGAAATAG+AGG | 0.519264 | 7:-85834648 | MsaT039196.1:CDS |
| TCCTAAAGATAATTCCGCAT+TGG | 0.522258 | 7:-85834676 | MsaT039196.1:CDS |
| GCAGAAACCCTGTACACATT+CGG | 0.522493 | 7:+85834618 | None:intergenic |
| TCCAGGAAGTGGATCTGGGA+GGG | 0.523504 | 7:+85833723 | None:intergenic |
| TTCTTCAGTTATGTTCAGAC+GGG | 0.524750 | 7:+85833699 | None:intergenic |
| TTTGAATTTGGATTCAGTTG+CGG | 0.525278 | 7:-85836011 | MsaT039196.1:CDS |
| TGGCTCCGAAGTCGCTCTCT+CGG | 0.526704 | 7:-85833567 | MsaT039196.1:CDS |
| TAGTGGATAATGTTTCTGGT+AGG | 0.527201 | 7:-85835076 | MsaT039196.1:CDS |
| GGGTTCCAGGAAGTGGATCT+GGG | 0.528707 | 7:+85833719 | None:intergenic |
| GTGCACAGCTTTCAAGGCAG+AGG | 0.529811 | 7:-85835541 | MsaT039196.1:CDS |
| AAGCGGGGTTTCCGAATGGA+AGG | 0.530530 | 7:-85834959 | MsaT039196.1:CDS |
| TTTAACAACATAAGGAGCAC+AGG | 0.531090 | 7:+85835304 | None:intergenic |
| ATCGCCAAGGAAATCGAGAT+CGG | 0.531775 | 7:+85836210 | None:intergenic |
| TTCACCAGCTTATCATTCCT+AGG | 0.531777 | 7:+85834804 | None:intergenic |
| AGCCATGAATTCGCCGGAGA+GGG | 0.532866 | 7:-85835825 | MsaT039196.1:CDS |
| TCGCCAAGGAAATCGAGATC+GGG | 0.535175 | 7:+85836211 | None:intergenic |
| TAGTAAGATTACTTATGTAA+TGG | 0.536158 | 7:-85835450 | MsaT039196.1:CDS |
| AAAATCCGAGAGAGCGACTT+CGG | 0.540450 | 7:+85833562 | None:intergenic |
| TTGAAGAAAGAGTCAAATGA+AGG | 0.540485 | 7:+85836244 | None:intergenic |
| GTTCTTCAGTTATGTTCAGA+CGG | 0.540851 | 7:+85833698 | None:intergenic |
| ATCGAACCTCGAAATGTAGT+AGG | 0.541329 | 7:-85835685 | MsaT039196.1:CDS |
| GTTGGCTGAGGCTTCAACCT+CGG | 0.543196 | 7:+85835248 | None:intergenic |
| TTGTTCCGGCGGTGGTTGAA+CGG | 0.544558 | 7:+85836339 | None:intergenic |
| GATAAGCTGGTGAAGATCGA+TGG | 0.548077 | 7:-85834795 | MsaT039196.1:CDS |
| TTCCTTTGGTTCCGATTCCG+AGG | 0.552849 | 7:-85835265 | MsaT039196.1:CDS |
| CCACAACTGTCAACAAGAGC+AGG | 0.555668 | 7:-85833765 | MsaT039196.1:CDS |
| GCCGGAATCAGGTGCTTCTG+TGG | 0.555970 | 7:-85836068 | MsaT039196.1:CDS |
| GGGGAAGCGGGGTTTCCGAA+TGG | 0.561151 | 7:-85834963 | MsaT039196.1:CDS |
| ATAGGAATAATTATGAAAGA+GGG | 0.566000 | 7:-85834923 | MsaT039196.1:CDS |
| TTAAAGGCTGTGATCTGAAG+AGG | 0.569436 | 7:-85835739 | MsaT039196.1:CDS |
| ATGATTTATTGCCGGGCAGG+TGG | 0.572214 | 7:+85833653 | None:intergenic |
| GTCGTTGTCGATCGAGAGGA+CGG | 0.573624 | 7:-85835660 | MsaT039196.1:CDS |
| GACGACGGTGGTTGTTCAGG+TGG | 0.574514 | 7:+85836316 | None:intergenic |
| ATAGGTGCCATTCCTGGATG+CGG | 0.575983 | 7:+85835344 | None:intergenic |
| AATAGTTCCAGCAGCAGCAG+TGG | 0.577132 | 7:-85833818 | MsaT039196.1:CDS |
| TCTCAGGGATCGGGGAACGG+TGG | 0.577492 | 7:-85835863 | MsaT039196.1:CDS |
| AAAGATGAAACATCCCTCTC+CGG | 0.578091 | 7:+85835812 | None:intergenic |
| CACATGCCAGAACTTAGCAT+TGG | 0.578294 | 7:+85833883 | None:intergenic |
| CTGTTTCGTCTCAGGGATCG+GGG | 0.578354 | 7:-85835871 | MsaT039196.1:CDS |
| TTGAAGATGAGGATGAGAAG+AGG | 0.578374 | 7:-85835592 | MsaT039196.1:CDS |
| ATGAAGTCTTCTGCAACTGA+TGG | 0.579273 | 7:-85834543 | MsaT039196.1:CDS |
| GTTTCCGGTGATCAGAGTCC+TGG | 0.579472 | 7:-85836046 | MsaT039196.1:CDS |
| GCAGAGGAAGAAGCATTATG+TGG | 0.581328 | 7:-85835525 | MsaT039196.1:CDS |
| GTCATATGAATGAATCTGGA+AGG | 0.581451 | 7:-85834989 | MsaT039196.1:CDS |
| CATGATGCATGCAACGCTGA+TGG | 0.582211 | 7:-85836121 | MsaT039196.1:CDS |
| GTACCCACCGCATCCAGGAA+TGG | 0.584929 | 7:-85835351 | MsaT039196.1:CDS |
| GGAATAATTATGAAAGAGGG+AGG | 0.585137 | 7:-85834920 | MsaT039196.1:CDS |
| TGTTCAGGTGGTTGTTCCGG+CGG | 0.585261 | 7:+85836328 | None:intergenic |
| GGTGCCATTCCTGGATGCGG+TGG | 0.587789 | 7:+85835347 | None:intergenic |
| TGTTCCTAGGAATGATAAGC+TGG | 0.588162 | 7:-85834808 | MsaT039196.1:CDS |
| GCATGTGATTGATAATTCGC+CGG | 0.589032 | 7:-85836086 | MsaT039196.1:CDS |
| AGATAATCATCAGTCTCCGA+CGG | 0.590359 | 7:+85836148 | None:intergenic |
| GGTTTCTGCTGAACAAAGAA+GGG | 0.591609 | 7:-85834604 | MsaT039196.1:CDS |
| GAGTGAGAGTAAGAAGAGTG+AGG | 0.592637 | 7:-85835201 | MsaT039196.1:CDS |
| GATAATCATCAGTCTCCGAC+GGG | 0.596708 | 7:+85836149 | None:intergenic |
| CTTGTTGATCCCAAAGAGGT+AGG | 0.597487 | 7:-85833613 | MsaT039196.1:CDS |
| AACCTCGGAATCGGAACCAA+AGG | 0.604998 | 7:+85835263 | None:intergenic |
| GAAAGGGAAGAGTCTTCGAA+TGG | 0.607622 | 7:-85835896 | MsaT039196.1:CDS |
| TGGCGATGTTGATGGCATGA+TGG | 0.608428 | 7:-85833587 | MsaT039196.1:CDS |
| GAAGCCTCAGCCAACTGCTG+CGG | 0.610900 | 7:-85835240 | MsaT039196.1:CDS |
| ATGCAACAGTGGTTTCGTGA+AGG | 0.612420 | 7:-85834516 | MsaT039196.1:CDS |
| GAATGAATCTGGAAGGAATG+GGG | 0.612489 | 7:-85834982 | MsaT039196.1:CDS |
| GATCCCAAAGAGGTAGGAGA+TGG | 0.616124 | 7:-85833607 | MsaT039196.1:CDS |
| CTGGAAGGAATGGGGAAGCG+GGG | 0.617811 | 7:-85834974 | MsaT039196.1:CDS |
| GAGGAAGAAGCATTATGTGG+AGG | 0.618127 | 7:-85835522 | MsaT039196.1:CDS |
| CTGTCACCAAAGGAGAAACA+CGG | 0.620177 | 7:+85833485 | None:intergenic |
| AACACCAGGACTCTGATCAC+CGG | 0.620315 | 7:+85836042 | None:intergenic |
| GTATGAAGCCATGAATTCGC+CGG | 0.621033 | 7:-85835831 | MsaT039196.1:CDS |
| GTGCCATTCCTGGATGCGGT+GGG | 0.621076 | 7:+85835348 | None:intergenic |
| TGTCACCAAAGGAGAAACAC+GGG | 0.626669 | 7:+85833486 | None:intergenic |
| TGGCTGAGAATGCTACACTT+AGG | 0.630909 | 7:-85835430 | MsaT039196.1:CDS |
| AAATACTGAAAATTCTTACA+GGG | 0.633557 | 7:-85835918 | MsaT039196.1:CDS |
| TGGCACCTATGCCTTATGCA+TGG | 0.634382 | 7:-85835331 | MsaT039196.1:CDS |
| GAACCTCGAAATGTAGTAGG+AGG | 0.634877 | 7:-85835682 | MsaT039196.1:CDS |
| TGTGCTTGTTGATCCCAAAG+AGG | 0.635244 | 7:-85833617 | MsaT039196.1:CDS |
| CCAAACTTAAAATCTACCAA+AGG | 0.635471 | 7:+85835104 | None:intergenic |
| CAAACATAAGCTGTCACCAA+AGG | 0.638493 | 7:+85833475 | None:intergenic |
| TTCCAGGAAGTGGATCTGGG+AGG | 0.639667 | 7:+85833722 | None:intergenic |
| TCTCACCGTTCAACCACCGC+CGG | 0.639884 | 7:-85836344 | MsaT039196.1:CDS |
| TCAACATCCGAATGTGTACA+GGG | 0.639982 | 7:-85834625 | MsaT039196.1:CDS |
| GAAAGAGGATGTGAAATTGG+AGG | 0.644180 | 7:-85835771 | MsaT039196.1:CDS |
| GATCTCGATTTCAACGACTA+CGG | 0.647229 | 7:-85836292 | MsaT039196.1:CDS |
| ATGGCATCTCAAGATGCTCA+GGG | 0.649184 | 7:-85834732 | MsaT039196.1:CDS |
| CTCGATTTCAACGACTACGG+TGG | 0.651643 | 7:-85836289 | MsaT039196.1:CDS |
| TATGGCTAGTGAGAAAGCCA+TGG | 0.652273 | 7:-85834751 | MsaT039196.1:CDS |
| ACACTTAGGCAACAATTGAG+TGG | 0.653994 | 7:-85835416 | MsaT039196.1:CDS |
| ACATACAAAGAAGCAAGCAA+TGG | 0.658210 | 7:+85834828 | None:intergenic |
| GGCATCCATGCATAAGGCAT+AGG | 0.660606 | 7:+85835326 | None:intergenic |
| AAGCCATGAATTCGCCGGAG+AGG | 0.660751 | 7:-85835826 | MsaT039196.1:CDS |
| AAAGAGGATGTGAAATTGGA+GGG | 0.661470 | 7:-85835770 | MsaT039196.1:CDS |
| ACGTGATTTCGAAATCGCCA+AGG | 0.661829 | 7:+85836197 | None:intergenic |
| AGAGTCAAATGAAGGAAGAG+CGG | 0.665532 | 7:+85836252 | None:intergenic |
| CTGATGGTAAAATGCAACAG+TGG | 0.665578 | 7:-85834527 | MsaT039196.1:CDS |
| AGATAATCTCCCTATCCCGT+CGG | 0.672222 | 7:-85836164 | MsaT039196.1:CDS |
| GGAGGTCGTTGTCGATCGAG+AGG | 0.674037 | 7:-85835664 | MsaT039196.1:CDS |
| TTAACAACATAAGGAGCACA+GGG | 0.677664 | 7:+85835305 | None:intergenic |
| TGGATGCGGTGGGTACATCG+GGG | 0.678733 | 7:+85835358 | None:intergenic |
| AAAGGAACCTGAGAACCTTG+AGG | 0.689564 | 7:+85835281 | None:intergenic |
| AAGTATGTGACTTACTCATG+TGG | 0.694107 | 7:-85833514 | MsaT039196.1:CDS |
| CTTAGGCAACAATTGAGTGG+TGG | 0.698725 | 7:-85835413 | MsaT039196.1:CDS |
| AACTTCGGGAATAGCCAATG+CGG | 0.702448 | 7:+85834662 | None:intergenic |
| TGGCATCTCAAGATGCTCAG+GGG | 0.720143 | 7:-85834731 | MsaT039196.1:CDS |
| AAATCGAGATCAGACGACGG+TGG | 0.735503 | 7:+85836304 | None:intergenic |
| GTCACCAAAGGAGAAACACG+GGG | 0.765380 | 7:+85833487 | None:intergenic |
| TTGAAATCGAGATCAGACGA+CGG | 0.786582 | 7:+85836301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 85833474 | 85836380 | 85833474 | ID=MsaG039196 |
| Chr7 | mRNA | 85833474 | 85836380 | 85833474 | ID=MsaT039196.1;Parent=MsaG039196 |
| Chr7 | exon | 85833474 | 85833907 | 85833474 | ID=MsaT039196.1.exon2;Parent=MsaT039196.1 |
| Chr7 | CDS | 85833474 | 85833907 | 85833474 | ID=cds.MsaT039196.1;Parent=MsaT039196.1 |
| Chr7 | exon | 85834508 | 85836380 | 85834508 | ID=MsaT039196.1.exon1;Parent=MsaT039196.1 |
| Chr7 | CDS | 85834508 | 85836380 | 85834508 | ID=cds.MsaT039196.1;Parent=MsaT039196.1 |
| Gene Sequence |
| Protein sequence |