AlfalfaGEDB | MsaG039214

M. sativa ssp. caerulea / MsaG039214

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039214	XP_003624937.2	100.000	92	0	0	1	92	1	92	7.75e-61	190

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039214	sp\|Q58FS3\|RAD_ANTMA	69.149	94	26	2	1	92	1	93	1.24e-40	132

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039214	tr\|A2Q4K0\|A2Q4K0_MEDTR	100.000	92	0	0	1	92	1	92	3.70e-61	190

TFs/TRs:

Gene ID	Type	Classification
MsaG039214	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG012716	MsaG039214	0.803704	5.172642e-49	7.609975e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039214	MtrunA17_Chr7g0255841	100.000	92	0	0	1	92	1	92	7.13e-65	190
MsaG039214	MtrunA17_Chr3g0081631	72.222	90	24	1	4	92	2	91	1.26e-44	139
MsaG039214	MtrunA17_Chr6g0449111	72.059	68	19	0	7	74	5	72	6.26e-35	114
MsaG039214	MtrunA17_Chr3g0144631	68.354	79	21	1	1	75	1	79	5.32e-34	112
MsaG039214	MtrunA17_Chr1g0155181	59.302	86	29	1	6	85	1	86	6.14e-33	109
MsaG039214	MtrunA17_Chr3g0141601	57.143	91	35	2	6	92	1	91	3.14e-32	107
MsaG039214	MtrunA17_Chr5g0404101	63.014	73	27	0	4	76	11	83	1.24e-30	103
MsaG039214	MtrunA17_Chr8g0373131	56.716	67	28	1	9	75	2	67	7.81e-25	88.6
MsaG039214	MtrunA17_Chr8g0373111	56.716	67	28	1	9	75	2	67	8.21e-25	88.6
MsaG039214	MtrunA17_Chr8g0373121	56.716	67	28	1	9	75	2	67	8.21e-25	88.6
MsaG039214	MtrunA17_Chr3g0141641	45.055	91	41	2	11	92	2	92	3.32e-24	87.4
MsaG039214	MtrunA17_Chr5g0404301	60.317	63	24	1	10	72	2	63	9.33e-24	85.5
MsaG039214	MtrunA17_Chr8g0373101	56.452	62	26	1	11	72	4	64	6.78e-23	83.6
MsaG039214	MtrunA17_Chr5g0436501	54.930	71	32	0	12	82	27	97	1.30e-20	82.8
MsaG039214	MtrunA17_Chr8g0364741	50.667	75	37	0	6	80	4	78	2.62e-20	78.6
MsaG039214	MtrunA17_Chr1g0162081	50.000	78	39	0	1	78	1	78	1.38e-19	80.5
MsaG039214	MtrunA17_Chr8g0365011	54.167	72	33	0	9	80	5	76	2.84e-19	79.3
MsaG039214	MtrunA17_Chr3g0104071	50.685	73	36	0	2	74	33	105	9.65e-19	78.2
MsaG039214	MtrunA17_Chr5g0429521	47.826	69	36	0	11	79	28	96	5.02e-18	76.3
MsaG039214	MtrunA17_Chr7g0241761	52.174	69	33	0	12	80	35	103	5.19e-18	76.3
MsaG039214	MtrunA17_Chr1g0194071	57.627	59	24	1	11	68	10	68	6.75e-16	66.6
MsaG039214	MtrunA17_Chr1g0210471	47.619	63	33	0	12	74	24	86	7.82e-15	67.0
MsaG039214	MtrunA17_Chr7g0270711	55.000	60	26	1	11	69	10	69	3.19e-14	62.0
MsaG039214	MtrunA17_Chr4g0062741	45.205	73	36	2	6	74	1	73	4.56e-14	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039214	AT2G21650.1	64.773	88	24	1	12	92	14	101	4.16e-38	123
MsaG039214	AT4G39250.1	64.368	87	25	1	12	92	14	100	1.32e-37	122
MsaG039214	AT1G75250.2	55.670	97	37	1	1	91	1	97	5.60e-36	117
MsaG039214	AT1G75250.1	69.333	75	23	0	1	75	1	75	1.47e-35	117
MsaG039214	AT1G19510.1	59.783	92	37	0	1	92	1	92	2.64e-29	100
MsaG039214	AT2G18328.1	62.295	61	23	0	15	75	14	74	1.84e-24	88.2
MsaG039214	AT5G05790.2	52.857	70	33	0	9	78	28	97	3.54e-20	82.0
MsaG039214	AT5G05790.1	52.857	70	33	0	9	78	28	97	3.54e-20	82.0
MsaG039214	AT4G36570.1	75.000	44	11	0	12	55	12	55	4.92e-20	76.3
MsaG039214	AT3G11280.2	52.239	67	32	0	12	78	33	99	1.03e-18	77.8
MsaG039214	AT3G11280.1	52.239	67	32	0	12	78	33	99	1.03e-18	77.8
MsaG039214	AT2G38090.1	52.174	69	33	0	12	80	29	97	2.27e-18	77.4
MsaG039214	AT5G58900.1	50.000	74	34	1	4	74	23	96	3.03e-17	74.3
MsaG039214	AT5G08520.1	52.381	63	30	0	12	74	12	74	5.44e-16	70.9
MsaG039214	AT1G49010.1	46.479	71	35	1	7	74	3	73	1.43e-14	67.4
MsaG039214	AT5G23650.1	46.377	69	37	0	6	74	7	75	2.01e-14	67.0
MsaG039214	AT5G04760.1	41.791	67	38	1	8	74	2	67	4.55e-13	62.4
MsaG039214	AT5G01200.1	42.424	66	37	1	10	74	28	93	2.05e-11	58.2

Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTAGTTCAATGTCAGCTTC+TGG	0.381239	7:-86115306	MsaT039214.1:CDS
GATATTAAACATATTGAGTC+AGG	0.394581	7:-86115135	MsaT039214.1:CDS
TAATGTTTCTTAACTTCCTC+AGG	0.405406	7:+86115174	None:intergenic
CAGTGTCTCATGAGGAGAAA+AGG	0.467404	7:-86115080	MsaT039214.1:intron
CAATGTCAGCTTCTGGCTCA+TGG	0.480309	7:-86115299	MsaT039214.1:CDS
TTCTGGCTCATGGAGTGTTA+AGG	0.488975	7:-86115289	MsaT039214.1:CDS
TTGCACTTGTTGGTCAATGA+AGG	0.513934	7:+86114859	None:intergenic
GCTACATTGTACCAACGATC+TGG	0.520197	7:+86115219	None:intergenic
AACAGCTAAAGCTCTTTCAA+AGG	0.549456	7:+86115257	None:intergenic
ACATTATGAACTTCTTGTTG+AGG	0.570098	7:-86115157	MsaT039214.1:CDS
GAAAATTTCAGTGTCTCATG+AGG	0.590467	7:-86115088	MsaT039214.1:CDS
TACAATGTAGCTCATGCTGT+TGG	0.593737	7:-86115207	MsaT039214.1:CDS
AATGTAGCTCATGCTGTTGG+TGG	0.602491	7:-86115204	MsaT039214.1:CDS
ACAAAGACACTCCAGATCGT+TGG	0.612332	7:-86115230	MsaT039214.1:CDS
ATATTAAACATATTGAGTCA+GGG	0.667795	7:-86115134	MsaT039214.1:CDS
TGTTGGTGGCAAAACTCCTG+AGG	0.702099	7:-86115190	MsaT039214.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	86114872	86115334	86114872	ID=MsaG039214
Chr7	mRNA	86114872	86115334	86114872	ID=MsaT039214.1;Parent=MsaG039214
Chr7	exon	86114872	86114896	86114872	ID=MsaT039214.1.exon2;Parent=MsaT039214.1
Chr7	CDS	86114872	86114896	86114872	ID=cds.MsaT039214.1;Parent=MsaT039214.1
Chr7	exon	86115081	86115334	86115081	ID=MsaT039214.1.exon1;Parent=MsaT039214.1
Chr7	CDS	86115081	86115334	86115081	ID=cds.MsaT039214.1;Parent=MsaT039214.1

Gene Sequence	>MsaT039214.1 ATGGCATCTAGTTCAATGTCAGCTTCTGGCTCATGGAGTGTTAAGGAGAACAAAGCCTTTGAAAGAGCTTTAGCTGTTTATGACAAAGACACTCCAGATCGTTGGTACAATGTAGCTCATGCTGTTGGTGGCAAAACTCCTGAGGAAGTTAAGAAACATTATGAACTTCTTGTTGAGGATATTAAACATATTGAGTCAGGGAAAGTTCCATTTCCAAATTACAAGAAAATTTCAGTGTCTCATGAGGAGAAAAGGATGAGGAACATGAGCCTTCATTGA
Protein sequence	>MsaT039214.1 MASSSMSASGSWSVKENKAFERALAVYDKDTPDRWYNVAHAVGGKTPEEVKKHYELLVEDIKHIESGKVPFPNYKKISVSHEEKRMRNMSLH*