AlfalfaGEDB | MsaG039308

M. sativa ssp. caerulea / MsaG039308

KEGG: K14972
GO: GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
PFAM: PF00533.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039308	XP_003625077.2	96.689	604	20	0	4	607	47	650	0.0	1221

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039308	sp\|Q6ZW49\|PAXI1_HUMAN	29.187	209	137	3	401	600	862	1068	1.30e-18	94.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039308	tr\|Q2HRG1\|Q2HRG1_MEDTR	96.689	604	20	0	4	607	47	650	0.0	1221

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG039308	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039308	MtrunA17_Chr7g0256891	96.689	604	20	0	4	607	47	650	0.0	1221
MsaG039308	MtrunA17_Chr2g0286541	25.510	196	139	2	406	596	930	1123	6.43e-13	72.0
MsaG039308	MtrunA17_Chr7g0268571	23.558	208	151	3	406	607	729	934	5.58e-11	65.9

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039308	AT2G41450.1	48.576	597	249	8	21	604	61	612	0.0	539
MsaG039308	AT2G41450.2	48.735	593	246	8	25	604	2	549	0.0	538
MsaG039308	AT4G03130.1	27.805	205	130	7	406	601	562	757	5.29e-14	75.9
MsaG039308	AT4G03130.2	27.805	205	130	7	406	601	566	761	5.69e-14	75.9
MsaG039308	AT3G21480.1	23.175	315	198	8	315	596	708	1011	1.43e-11	68.2
MsaG039308	AT4G03130.3	30.986	142	87	5	406	543	566	700	6.60e-11	65.9

Showing 1 to 6 of 6 entries

Previous1Next

Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGTCTGCTATTGTT+AGG	0.420715	7:+87372109	MsaT039308.1:CDS
AAAGCATTATGCTTTCCTGG+TGG	0.677104	7:+87369390	MsaT039308.1:CDS
AAATGGTGCAGATTGTACCC+AGG	0.675885	7:+87369893	MsaT039308.1:CDS
AAGAAACTTTGATTGCTTTC+CGG	0.309803	7:-87367319	None:intergenic
AATGATGACAGACAAGCAAA+TGG	0.562041	7:+87369876	MsaT039308.1:CDS
AATTCTGATGAGGCTGTGAG+GGG	0.660055	7:-87369482	None:intergenic
AATTGAAGTATCACAATGAG+GGG	0.625488	7:-87370102	None:intergenic
AATTTCACTCCTGAAGAAAG+AGG	0.594165	7:+87366969	MsaT039308.1:CDS
ACAAAGAATCTGAAGGATTT+TGG	0.192159	7:+87368712	MsaT039308.1:CDS
ACCTCACATTCTGAATGATA+AGG	0.445474	7:+87371966	MsaT039308.1:CDS

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	87366927	87373327	87366927	ID=MsaG039308
Chr7	mRNA	87366927	87373327	87366927	ID=MsaT039308.1;Parent=MsaG039308
Chr7	exon	87366927	87366990	87366927	ID=MsaT039308.1.exon1;Parent=MsaT039308.1
Chr7	CDS	87366927	87366990	87366927	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87367088	87367149	87367088	ID=MsaT039308.1.exon2;Parent=MsaT039308.1
Chr7	CDS	87367088	87367149	87367088	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87367264	87367361	87367264	ID=MsaT039308.1.exon3;Parent=MsaT039308.1
Chr7	CDS	87367264	87367361	87367264	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87367490	87367541	87367490	ID=MsaT039308.1.exon4;Parent=MsaT039308.1
Chr7	CDS	87367490	87367541	87367490	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87368034	87368126	87368034	ID=MsaT039308.1.exon5;Parent=MsaT039308.1
Chr7	CDS	87368034	87368126	87368034	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87368633	87368743	87368633	ID=MsaT039308.1.exon6;Parent=MsaT039308.1
Chr7	CDS	87368633	87368743	87368633	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87369318	87369657	87369318	ID=MsaT039308.1.exon7;Parent=MsaT039308.1
Chr7	CDS	87369318	87369657	87369318	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87369817	87370265	87369817	ID=MsaT039308.1.exon8;Parent=MsaT039308.1
Chr7	CDS	87369817	87370265	87369817	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87370584	87370693	87370584	ID=MsaT039308.1.exon9;Parent=MsaT039308.1
Chr7	CDS	87370584	87370693	87370584	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87371822	87371880	87371822	ID=MsaT039308.1.exon10;Parent=MsaT039308.1
Chr7	CDS	87371822	87371880	87371822	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87371959	87372146	87371959	ID=MsaT039308.1.exon11;Parent=MsaT039308.1
Chr7	CDS	87371959	87372146	87371959	ID=cds.MsaT039308.1;Parent=MsaT039308.1
Chr7	exon	87373130	87373327	87373130	ID=MsaT039308.1.exon12;Parent=MsaT039308.1
Chr7	CDS	87373130	87373327	87373130	ID=cds.MsaT039308.1;Parent=MsaT039308.1

Gene Sequence

>MsaT039308.1

ATGTTTCAAGATGTTTCTGCAAACCATAAAAACGCTTCTGGGAATTTCACTCCTGAAGAAAGAGAACATGAATTCATGCTGGTTAATACTAAAGATGATGATGATATTACCAAATCATACCTTCAGGAGGTATTACAGATGTATATGACAGAGCTACCTGGGATGAATTATGCTGCAAATACCGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTACTTCTGAAATCCAGTTTGGCTGGAGATTCAGGAAAGGTTATAGCTGCAATTACTTATCAAATCGTCCCTGCAGACACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCAGATATTGTTTCTAGAGCTCCGGAAGAGACTTCAAAATGTTGGCATTCGCTCTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAACAGGGTTTTTCATCAATAGCACAGGTGGATACAAAAGGTAGAGCCCGCAGGTTACCTGTAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGTGGTTCGACTCTCATGATTCTCCATCTAAAGAAGGAATTGTTTGATGACAATGCTAACTCTGGGAAGTGTCTCCCCTCACAGCCTCATCAGAATTCCTTTACACCTGCAATTGTTGAAAATGAGCAGCTCGAATTCTCAGATGAACTACTCATTAACTTGAAATCTTCCCATAGAACAGACACAAGTCAAAGTAAACCCAATGCTTTGGTAAAAGTTGGATCTTCTCGAGGACGTGGAAAACTCAATGGATTTGACAGTCAGAATCCTAAGAACTGCTGCAATGACACTGTTGATTTTGCCAGAGCAAATGATGACAGACAAGCAAATGGTGCAGATTGTACCCAGGATGAAAATTATGCTAATATAGCGCATTGTTCTCAATCTACAAAAGTTTTAAAGAGGGCCTGGGAAGCCTCTTCATCCTCGTTGAAGTCAAAGAGAGTGAGGGGAAGCCAGTTTGTTGACTGTCGATCAGATTCTAGCTGGGGTTTTGTCTCCGAGGCTGGTAGGGCCAATCCTTGTTCTGCGGAATCCCCTCATTGTGATACTTCAATTACAAAGAACTCTGAAAAATGTATTGGAGACCATATGCATTTAGAAGCTCCGATCAGCCTAAAACTGCCATCAACTGAACAATGCTTTAGAATCATGTTGATGAACATCACTGATGACGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTAGGTGGAACTATTGCCTCTGATGGAAGCTCAACCACACATGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACTGCTCTCTGTTCCGGTGCTTGGGTGGTCTCATCGACTTGGTTAAAAGAAAGTTTTCGACAAGGCAGATTTGTTGATGAATTACCTCACATTCTGAATGATAAGGATTATTTGTTGAAGTATAAATCGGATTTAAGAAGTGCAGTTTTACGAGCAAAAGCTTGTCCCCATTCTTTGTTTAAGGGTTATAATATATGTATTGCAGCTAATGTTCAAACTTCTGCAAAAACTCTGTCTGCTATTGTTAGGTCTGCTGGTGGTAATGTTATTAGTGGACTAAGAAAAGTAAATGAAGCATCAACAACAATCTTTGTGACTCGCGAAGAAGACATTGAAGAAGCAATGATGGCTGCAAAGAAAGGTATAAGGACTTTCGACAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTCGACATGGAAGCCTCCCAATTTGCAGAGTCCTTATCAGATTGTTAA

Protein sequence

>MsaT039308.1

MFQDVSANHKNASGNFTPEEREHEFMLVNTKDDDDITKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSSLAGDSGKVIAAITYQIVPADTEYAEIPLAAVNAIYQRKGFGQILFLELRKRLQNVGIRSIFCWGDKESEGFWLKQGFSSIAQVDTKGRARRLPVKADIRKALCFPGGSTLMILHLKKELFDDNANSGKCLPSQPHQNSFTPAIVENEQLEFSDELLINLKSSHRTDTSQSKPNALVKVGSSRGRGKLNGFDSQNPKNCCNDTVDFARANDDRQANGADCTQDENYANIAHCSQSTKVLKRAWEASSSSLKSKRVRGSQFVDCRSDSSWGFVSEAGRANPCSAESPHCDTSITKNSEKCIGDHMHLEAPISLKLPSTEQCFRIMLMNITDDAKKTQLTKVIEDLGGTIASDGSSTTHVVTGQVRKTLNFCTALCSGAWVVSSTWLKESFRQGRFVDELPHILNDKDYLLKYKSDLRSAVLRAKACPHSLFKGYNICIAANVQTSAKTLSAIVRSAGGNVISGLRKVNEASTTIFVTREEDIEEAMMAAKKGIRTFDSEWFMNCVMRQELDMEASQFAESLSDC*