Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039308 | XP_003625077.2 | 96.689 | 604 | 20 | 0 | 4 | 607 | 47 | 650 | 0.0 | 1221 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039308 | sp|Q6ZW49|PAXI1_HUMAN | 29.187 | 209 | 137 | 3 | 401 | 600 | 862 | 1068 | 1.30e-18 | 94.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039308 | tr|Q2HRG1|Q2HRG1_MEDTR | 96.689 | 604 | 20 | 0 | 4 | 607 | 47 | 650 | 0.0 | 1221 |
Gene ID | Type | Classification |
---|---|---|
MsaG039308 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039308 | MtrunA17_Chr7g0256891 | 96.689 | 604 | 20 | 0 | 4 | 607 | 47 | 650 | 0.0 | 1221 |
MsaG039308 | MtrunA17_Chr2g0286541 | 25.510 | 196 | 139 | 2 | 406 | 596 | 930 | 1123 | 6.43e-13 | 72.0 |
MsaG039308 | MtrunA17_Chr7g0268571 | 23.558 | 208 | 151 | 3 | 406 | 607 | 729 | 934 | 5.58e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039308 | AT2G41450.1 | 48.576 | 597 | 249 | 8 | 21 | 604 | 61 | 612 | 0.0 | 539 |
MsaG039308 | AT2G41450.2 | 48.735 | 593 | 246 | 8 | 25 | 604 | 2 | 549 | 0.0 | 538 |
MsaG039308 | AT4G03130.1 | 27.805 | 205 | 130 | 7 | 406 | 601 | 562 | 757 | 5.29e-14 | 75.9 |
MsaG039308 | AT4G03130.2 | 27.805 | 205 | 130 | 7 | 406 | 601 | 566 | 761 | 5.69e-14 | 75.9 |
MsaG039308 | AT3G21480.1 | 23.175 | 315 | 198 | 8 | 315 | 596 | 708 | 1011 | 1.43e-11 | 68.2 |
MsaG039308 | AT4G03130.3 | 30.986 | 142 | 87 | 5 | 406 | 543 | 566 | 700 | 6.60e-11 | 65.9 |
Find 106 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTCCCCATTCTTTGTTTA+AGG | 0.153944 | 7:+87372044 | MsaT039308.1:CDS |
ACAAAGAATCTGAAGGATTT+TGG | 0.192159 | 7:+87368712 | MsaT039308.1:CDS |
TTCTGTACTGCTCTCTGTTC+CGG | 0.211542 | 7:+87370671 | MsaT039308.1:CDS |
TCCAGTTTGGCTGGAGATTC+AGG | 0.213380 | 7:+87367515 | MsaT039308.1:CDS |
CTGATAAGGACTCTGCAAAT+TGG | 0.274898 | 7:-87373297 | None:intergenic |
CAAACAATTCCTTCTTTAGA+TGG | 0.275506 | 7:-87369431 | None:intergenic |
TTTGACTTGTGTCTGTTCTA+TGG | 0.278979 | 7:-87369578 | None:intergenic |
CGTAAAGCATTATGCTTTCC+TGG | 0.295086 | 7:+87369387 | MsaT039308.1:CDS |
GTGTCATTGCAGCAGTTCTT+AGG | 0.300365 | 7:-87369834 | None:intergenic |
AAGAAACTTTGATTGCTTTC+CGG | 0.309803 | 7:-87367319 | None:intergenic |
GTTGATATCCTGCAGGGTTT+TGG | 0.322827 | 7:+87368618 | MsaT039308.1:intron |
CTAAAGCATTGTTCAGTTGA+TGG | 0.343270 | 7:-87370191 | None:intergenic |
TCTGTACTGCTCTCTGTTCC+GGG | 0.344750 | 7:+87370672 | MsaT039308.1:CDS |
TGTCCCCATTCTTTGTTTAA+GGG | 0.350626 | 7:+87372045 | MsaT039308.1:CDS |
TCCTGAATCTCCAGCCAAAC+TGG | 0.360192 | 7:-87367516 | None:intergenic |
CCCAATGCTTTGGTAAAAGT+TGG | 0.376995 | 7:+87369606 | MsaT039308.1:CDS |
CACTACCTGAAGGTATGATT+TGG | 0.384485 | 7:-87367133 | None:intergenic |
TTCTTGTATTAGGTTATTAG+TGG | 0.388331 | 7:+87373118 | MsaT039308.1:intron |
TTATTTGTTGAAGTATAAAT+CGG | 0.396914 | 7:+87371990 | MsaT039308.1:CDS |
TCTGCTATTGTTAGGTCTGC+TGG | 0.410098 | 7:+87372117 | MsaT039308.1:CDS |
TATAACCCTTAAACAAAGAA+TGG | 0.415431 | 7:-87372050 | None:intergenic |
ACTACTTCTGAAATCCAGTT+TGG | 0.417176 | 7:+87367502 | MsaT039308.1:CDS |
TTGAGAGATGTGTGACTAAT+GGG | 0.419347 | 7:+87367340 | MsaT039308.1:CDS |
AAACTCTGTCTGCTATTGTT+AGG | 0.420715 | 7:+87372109 | MsaT039308.1:CDS |
TGATAAGGACTCTGCAAATT+GGG | 0.421166 | 7:-87373296 | None:intergenic |
ATGAATTATGCTGCAAATAC+CGG | 0.424682 | 7:+87367300 | MsaT039308.1:CDS |
TGGCTGCAAAGAAAGGTATA+AGG | 0.425240 | 7:+87373212 | MsaT039308.1:CDS |
CTTGAGAGATGTGTGACTAA+TGG | 0.429713 | 7:+87367339 | MsaT039308.1:CDS |
TTGTCTGTCATCATTTGCTC+TGG | 0.434845 | 7:-87369868 | None:intergenic |
ACTGTCGATCAGATTCTAGC+TGG | 0.443148 | 7:+87370033 | MsaT039308.1:CDS |
TTCAACAATTGCAGGTGTAA+AGG | 0.444936 | 7:-87369505 | None:intergenic |
ACCTCACATTCTGAATGATA+AGG | 0.445474 | 7:+87371966 | MsaT039308.1:CDS |
TTGACTTGTGTCTGTTCTAT+GGG | 0.445981 | 7:-87369577 | None:intergenic |
TTTCGACAAGGCAGATTTGT+TGG | 0.448692 | 7:+87371859 | MsaT039308.1:CDS |
ATAACCCTTAAACAAAGAAT+GGG | 0.449312 | 7:-87372049 | None:intergenic |
TCTGCATATTCTGTGTCTGC+AGG | 0.453750 | 7:-87368064 | None:intergenic |
CGAGGATGAAGAGGCTTCCC+AGG | 0.455925 | 7:-87369973 | None:intergenic |
TCAAAGTAAACCCAATGCTT+TGG | 0.461826 | 7:+87369596 | MsaT039308.1:CDS |
CTTCTGAAATCCAGTTTGGC+TGG | 0.468826 | 7:+87367506 | MsaT039308.1:CDS |
TTGTTAACTACACAGTGCTT+GGG | 0.469784 | 7:+87371807 | MsaT039308.1:intron |
CTGATCGACAGTCAACAAAC+TGG | 0.471082 | 7:-87370022 | None:intergenic |
TTTGATGACAATGCTAACTC+TGG | 0.474813 | 7:+87369450 | MsaT039308.1:CDS |
TCGGAGCTTCTAAATGCATA+TGG | 0.479623 | 7:-87370154 | None:intergenic |
AGATATTGTTTCTAGAGCTC+CGG | 0.491665 | 7:+87368643 | MsaT039308.1:CDS |
GGCATGTTAACAATCTGATA+AGG | 0.498089 | 7:-87373311 | None:intergenic |
CATGATTCTCCATCTAAAGA+AGG | 0.505386 | 7:+87369422 | MsaT039308.1:CDS |
CTGTCGATCAGATTCTAGCT+GGG | 0.506118 | 7:+87370034 | MsaT039308.1:CDS |
AGACATTGAAGAAGCAATGA+TGG | 0.507527 | 7:+87373192 | MsaT039308.1:CDS |
GAATTCTGATGAGGCTGTGA+GGG | 0.507711 | 7:-87369483 | None:intergenic |
CTTGGGTGGTCTCATCGACT+TGG | 0.511542 | 7:+87371824 | MsaT039308.1:CDS |
GCAATGATGGCTGCAAAGAA+AGG | 0.515441 | 7:+87373205 | MsaT039308.1:CDS |
ATGTATATGACAGAGCTACC+TGG | 0.523476 | 7:+87367276 | MsaT039308.1:CDS |
GTTGGATCTTCTCGAGGACG+TGG | 0.523707 | 7:+87369624 | MsaT039308.1:CDS |
TATTACCAAATCATACCTTC+AGG | 0.525549 | 7:+87367128 | MsaT039308.1:CDS |
CGAGGACGTGGAAAACTCAA+TGG | 0.537156 | 7:+87369636 | MsaT039308.1:CDS |
AGGATTGGCCCTACCAGCCT+CGG | 0.539403 | 7:-87370066 | None:intergenic |
CGGAAGAGACTTCAAAATGT+TGG | 0.539655 | 7:+87368663 | MsaT039308.1:CDS |
GGATTCCGCAGAACAAGGAT+TGG | 0.544036 | 7:-87370081 | None:intergenic |
ATAGCACAGGTGGATACAAA+AGG | 0.544150 | 7:+87369330 | MsaT039308.1:CDS |
TGACTTCAACGAGGATGAAG+AGG | 0.545463 | 7:-87369982 | None:intergenic |
GGTGGAACTATTGCCTCTGA+TGG | 0.550900 | 7:+87370599 | MsaT039308.1:CDS |
CGTAGAACATGAATTCATGC+TGG | 0.551754 | 7:+87367083 | MsaT039308.1:intron |
TAATTGAAGTATCACAATGA+GGG | 0.558462 | 7:-87370103 | None:intergenic |
AATGATGACAGACAAGCAAA+TGG | 0.562041 | 7:+87369876 | MsaT039308.1:CDS |
ATACAAAAGGTAGAGCCCGC+AGG | 0.578945 | 7:+87369343 | MsaT039308.1:CDS |
TGAGGGGATTCCGCAGAACA+AGG | 0.583621 | 7:-87370086 | None:intergenic |
CTGCATATTCTGTGTCTGCA+GGG | 0.585523 | 7:-87368063 | None:intergenic |
TTTGCAGCATAATTCATCCC+AGG | 0.585813 | 7:-87367294 | None:intergenic |
TAAGGACTTTCGACAGTGAG+TGG | 0.588593 | 7:+87373230 | MsaT039308.1:CDS |
TGTATATGACAGAGCTACCT+GGG | 0.591959 | 7:+87367277 | MsaT039308.1:CDS |
TTAACTACACAGTGCTTGGG+TGG | 0.593202 | 7:+87371810 | MsaT039308.1:intron |
AATTTCACTCCTGAAGAAAG+AGG | 0.594165 | 7:+87366969 | MsaT039308.1:CDS |
TGTGGTTGAGCTTCCATCAG+AGG | 0.594722 | 7:-87370612 | None:intergenic |
TCCTTATCATTCAGAATGTG+AGG | 0.599269 | 7:-87371967 | None:intergenic |
GTAAAAGTTGGATCTTCTCG+AGG | 0.601134 | 7:+87369618 | MsaT039308.1:CDS |
CGTTGAAGTCAAAGAGAGTG+AGG | 0.602805 | 7:+87369994 | MsaT039308.1:CDS |
TCAACCACACATGTTGTCAC+AGG | 0.605648 | 7:+87370626 | MsaT039308.1:CDS |
TAAGAAAACACAGCTTACAA+AGG | 0.606148 | 7:+87370244 | MsaT039308.1:CDS |
TGTCGATCAGATTCTAGCTG+GGG | 0.610722 | 7:+87370035 | MsaT039308.1:CDS |
TTGATGACAATGCTAACTCT+GGG | 0.616144 | 7:+87369451 | MsaT039308.1:CDS |
CATGAGACAAGAGCTCGACA+TGG | 0.620599 | 7:+87373267 | MsaT039308.1:CDS |
TTGAAGTCAAAGAGAGTGAG+GGG | 0.624778 | 7:+87369996 | MsaT039308.1:CDS |
GTAATTGAAGTATCACAATG+AGG | 0.625076 | 7:-87370104 | None:intergenic |
AATTGAAGTATCACAATGAG+GGG | 0.625488 | 7:-87370102 | None:intergenic |
TGGGGAGACAAAGAATCTGA+AGG | 0.626446 | 7:+87368705 | MsaT039308.1:CDS |
CAGAGGCAATAGTTCCACCT+AGG | 0.629274 | 7:-87370595 | None:intergenic |
GTTGAAGTCAAAGAGAGTGA+GGG | 0.634453 | 7:+87369995 | MsaT039308.1:CDS |
CAATGCAATCTATCAACGGA+AGG | 0.636176 | 7:+87368105 | MsaT039308.1:CDS |
CTGTCAATGCAATCTATCAA+CGG | 0.636846 | 7:+87368101 | MsaT039308.1:CDS |
ATTGCATTGACAGCTGCAAG+TGG | 0.637300 | 7:-87368091 | None:intergenic |
ATCATGAGAGTCGAACCACC+AGG | 0.638186 | 7:-87369405 | None:intergenic |
GGAATTCTGATGAGGCTGTG+AGG | 0.653417 | 7:-87369484 | None:intergenic |
TTGCATTGACAGCTGCAAGT+GGG | 0.654261 | 7:-87368090 | None:intergenic |
TAGGGCCAATCCTTGTTCTG+CGG | 0.655927 | 7:+87370076 | MsaT039308.1:CDS |
AATTCTGATGAGGCTGTGAG+GGG | 0.660055 | 7:-87369482 | None:intergenic |
TTTGGCTGGAGATTCAGGAA+AGG | 0.669858 | 7:+87367520 | MsaT039308.1:CDS |
ATATAGGTGATTGAAGACCT+AGG | 0.671284 | 7:+87370578 | MsaT039308.1:intron |
AAATGGTGCAGATTGTACCC+AGG | 0.675885 | 7:+87369893 | MsaT039308.1:CDS |
AAAGCATTATGCTTTCCTGG+TGG | 0.677104 | 7:+87369390 | MsaT039308.1:CDS |
TTGTCCTGTGACAACATGTG+TGG | 0.679152 | 7:-87370630 | None:intergenic |
TAAGGACTCTGCAAATTGGG+AGG | 0.680636 | 7:-87373293 | None:intergenic |
GCTATTGTTAGGTCTGCTGG+TGG | 0.684582 | 7:+87372120 | MsaT039308.1:CDS |
TAACCCTTAAACAAAGAATG+GGG | 0.687115 | 7:-87372048 | None:intergenic |
CACTCTCTTTGACTTCAACG+AGG | 0.710470 | 7:-87369991 | None:intergenic |
GGTGTAAAGGAATTCTGATG+AGG | 0.724005 | 7:-87369492 | None:intergenic |
TAGGTGATTGAAGACCTAGG+TGG | 0.771557 | 7:+87370581 | MsaT039308.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 87366927 | 87373327 | 87366927 | ID=MsaG039308 |
Chr7 | mRNA | 87366927 | 87373327 | 87366927 | ID=MsaT039308.1;Parent=MsaG039308 |
Chr7 | exon | 87366927 | 87366990 | 87366927 | ID=MsaT039308.1.exon1;Parent=MsaT039308.1 |
Chr7 | CDS | 87366927 | 87366990 | 87366927 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87367088 | 87367149 | 87367088 | ID=MsaT039308.1.exon2;Parent=MsaT039308.1 |
Chr7 | CDS | 87367088 | 87367149 | 87367088 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87367264 | 87367361 | 87367264 | ID=MsaT039308.1.exon3;Parent=MsaT039308.1 |
Chr7 | CDS | 87367264 | 87367361 | 87367264 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87367490 | 87367541 | 87367490 | ID=MsaT039308.1.exon4;Parent=MsaT039308.1 |
Chr7 | CDS | 87367490 | 87367541 | 87367490 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87368034 | 87368126 | 87368034 | ID=MsaT039308.1.exon5;Parent=MsaT039308.1 |
Chr7 | CDS | 87368034 | 87368126 | 87368034 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87368633 | 87368743 | 87368633 | ID=MsaT039308.1.exon6;Parent=MsaT039308.1 |
Chr7 | CDS | 87368633 | 87368743 | 87368633 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87369318 | 87369657 | 87369318 | ID=MsaT039308.1.exon7;Parent=MsaT039308.1 |
Chr7 | CDS | 87369318 | 87369657 | 87369318 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87369817 | 87370265 | 87369817 | ID=MsaT039308.1.exon8;Parent=MsaT039308.1 |
Chr7 | CDS | 87369817 | 87370265 | 87369817 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87370584 | 87370693 | 87370584 | ID=MsaT039308.1.exon9;Parent=MsaT039308.1 |
Chr7 | CDS | 87370584 | 87370693 | 87370584 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87371822 | 87371880 | 87371822 | ID=MsaT039308.1.exon10;Parent=MsaT039308.1 |
Chr7 | CDS | 87371822 | 87371880 | 87371822 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87371959 | 87372146 | 87371959 | ID=MsaT039308.1.exon11;Parent=MsaT039308.1 |
Chr7 | CDS | 87371959 | 87372146 | 87371959 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Chr7 | exon | 87373130 | 87373327 | 87373130 | ID=MsaT039308.1.exon12;Parent=MsaT039308.1 |
Chr7 | CDS | 87373130 | 87373327 | 87373130 | ID=cds.MsaT039308.1;Parent=MsaT039308.1 |
Gene Sequence |
Protein sequence |