Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039416 | XP_003625196.1 | 97.353 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 0.0 | 687 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039416 | sp|Q8VZ02|BH048_ARATH | 47.802 | 364 | 120 | 9 | 3 | 340 | 8 | 327 | 9.20e-91 | 277 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039416 | tr|A2Q3E9|A2Q3E9_MEDTR | 97.353 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 0.0 | 687 |
Gene ID | Type | Classification |
---|---|---|
MsaG039416 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039416 | MtrunA17_Chr7g0258161 | 97.353 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 0.0 | 687 |
MsaG039416 | MtrunA17_Chr1g0174161 | 68.103 | 348 | 81 | 8 | 1 | 340 | 1 | 326 | 6.20e-146 | 414 |
MsaG039416 | MtrunA17_Chr7g0234761 | 47.343 | 207 | 77 | 6 | 129 | 319 | 259 | 449 | 1.18e-46 | 165 |
MsaG039416 | MtrunA17_Chr4g0035101 | 61.417 | 127 | 45 | 1 | 132 | 258 | 106 | 228 | 1.09e-43 | 153 |
MsaG039416 | MtrunA17_Chr3g0144641 | 57.037 | 135 | 49 | 2 | 130 | 255 | 139 | 273 | 3.61e-43 | 153 |
MsaG039416 | MtrunA17_Chr1g0152131 | 62.185 | 119 | 44 | 1 | 140 | 258 | 228 | 345 | 1.12e-42 | 152 |
MsaG039416 | MtrunA17_Chr5g0421111 | 53.947 | 152 | 67 | 3 | 108 | 258 | 301 | 450 | 1.69e-42 | 154 |
MsaG039416 | MtrunA17_Chr8g0365941 | 52.597 | 154 | 66 | 3 | 108 | 258 | 241 | 390 | 5.59e-41 | 149 |
MsaG039416 | MtrunA17_Chr8g0363921 | 59.016 | 122 | 46 | 1 | 131 | 252 | 113 | 230 | 7.29e-39 | 139 |
MsaG039416 | MtrunA17_Chr8g0339091 | 54.331 | 127 | 56 | 2 | 132 | 257 | 250 | 375 | 1.14e-38 | 143 |
MsaG039416 | MtrunA17_Chr8g0385911 | 70.833 | 96 | 23 | 3 | 166 | 256 | 136 | 231 | 8.54e-38 | 137 |
MsaG039416 | MtrunA17_Chr5g0415291 | 66.990 | 103 | 30 | 2 | 145 | 246 | 86 | 185 | 3.60e-36 | 130 |
MsaG039416 | MtrunA17_Chr3g0131771 | 70.000 | 90 | 24 | 1 | 170 | 256 | 144 | 233 | 9.90e-36 | 132 |
MsaG039416 | MtrunA17_Chr6g0484271 | 56.604 | 106 | 45 | 1 | 145 | 250 | 128 | 232 | 4.72e-31 | 118 |
MsaG039416 | MtrunA17_Chr4g0074161 | 61.429 | 70 | 26 | 1 | 169 | 238 | 202 | 270 | 1.00e-17 | 83.6 |
MsaG039416 | MtrunA17_Chr1g0190731 | 60.606 | 66 | 25 | 1 | 173 | 238 | 193 | 257 | 2.17e-16 | 79.3 |
MsaG039416 | MtrunA17_Chr1g0193321 | 36.842 | 114 | 67 | 3 | 135 | 247 | 426 | 535 | 5.44e-14 | 73.2 |
MsaG039416 | MtrunA17_Chr4g0014771 | 50.769 | 65 | 32 | 0 | 173 | 237 | 118 | 182 | 5.84e-13 | 67.0 |
MsaG039416 | MtrunA17_Chr1g0182791 | 46.377 | 69 | 36 | 1 | 175 | 243 | 319 | 386 | 1.45e-12 | 68.6 |
MsaG039416 | MtrunA17_Chr7g0258181 | 43.243 | 74 | 42 | 0 | 173 | 246 | 243 | 316 | 2.76e-12 | 66.6 |
MsaG039416 | MtrunA17_Chr1g0174271 | 47.826 | 69 | 36 | 0 | 173 | 241 | 298 | 366 | 3.05e-12 | 67.0 |
MsaG039416 | MtrunA17_Chr4g0032951 | 49.231 | 65 | 33 | 0 | 173 | 237 | 355 | 419 | 3.78e-12 | 67.0 |
MsaG039416 | MtrunA17_Chr8g0351881 | 46.154 | 65 | 35 | 0 | 173 | 237 | 316 | 380 | 6.25e-12 | 66.2 |
MsaG039416 | MtrunA17_Chr2g0329041 | 41.096 | 73 | 43 | 0 | 173 | 245 | 332 | 404 | 1.94e-11 | 64.7 |
MsaG039416 | MtrunA17_Chr1g0184841 | 57.576 | 66 | 27 | 1 | 173 | 238 | 120 | 184 | 2.73e-11 | 63.5 |
MsaG039416 | MtrunA17_Chr3g0134741 | 37.190 | 121 | 59 | 5 | 143 | 256 | 208 | 318 | 6.08e-11 | 62.8 |
MsaG039416 | MtrunA17_Chr1g0152651 | 46.154 | 65 | 34 | 1 | 173 | 237 | 274 | 337 | 8.28e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039416 | AT3G57800.2 | 50.815 | 368 | 127 | 11 | 15 | 340 | 24 | 379 | 8.06e-97 | 292 |
MsaG039416 | AT2G42300.1 | 47.802 | 364 | 120 | 9 | 3 | 340 | 8 | 327 | 9.36e-92 | 277 |
MsaG039416 | AT3G57800.1 | 45.060 | 415 | 127 | 12 | 15 | 340 | 24 | 426 | 2.80e-87 | 269 |
MsaG039416 | AT2G42300.4 | 50.704 | 284 | 95 | 7 | 3 | 260 | 8 | 272 | 1.68e-73 | 229 |
MsaG039416 | AT3G07340.2 | 41.538 | 260 | 100 | 8 | 78 | 311 | 140 | 373 | 4.99e-48 | 167 |
MsaG039416 | AT3G07340.1 | 41.538 | 260 | 100 | 8 | 78 | 311 | 140 | 373 | 7.97e-48 | 167 |
MsaG039416 | AT1G26260.4 | 40.948 | 232 | 91 | 5 | 73 | 258 | 77 | 308 | 4.37e-44 | 156 |
MsaG039416 | AT1G26260.1 | 40.948 | 232 | 91 | 5 | 73 | 258 | 77 | 308 | 4.37e-44 | 156 |
MsaG039416 | AT1G26260.6 | 40.948 | 232 | 91 | 5 | 73 | 258 | 77 | 308 | 4.37e-44 | 156 |
MsaG039416 | AT1G26260.2 | 40.948 | 232 | 91 | 5 | 73 | 258 | 77 | 308 | 4.37e-44 | 156 |
MsaG039416 | AT1G68920.3 | 49.390 | 164 | 77 | 2 | 121 | 281 | 253 | 413 | 5.41e-43 | 155 |
MsaG039416 | AT1G68920.1 | 49.390 | 164 | 77 | 2 | 121 | 281 | 254 | 414 | 5.61e-43 | 155 |
MsaG039416 | AT1G68920.4 | 49.390 | 164 | 77 | 2 | 121 | 281 | 254 | 414 | 5.61e-43 | 155 |
MsaG039416 | AT1G68920.2 | 49.390 | 164 | 77 | 2 | 121 | 281 | 254 | 414 | 5.61e-43 | 155 |
MsaG039416 | AT1G10120.2 | 48.503 | 167 | 73 | 2 | 113 | 276 | 153 | 309 | 6.61e-43 | 152 |
MsaG039416 | AT1G10120.1 | 48.503 | 167 | 73 | 2 | 113 | 276 | 153 | 309 | 6.61e-43 | 152 |
MsaG039416 | AT2G42300.5 | 43.644 | 236 | 88 | 7 | 3 | 212 | 8 | 224 | 1.35e-42 | 147 |
MsaG039416 | AT2G42300.3 | 43.644 | 236 | 88 | 7 | 3 | 212 | 8 | 224 | 1.35e-42 | 147 |
MsaG039416 | AT2G42300.2 | 43.644 | 236 | 88 | 7 | 3 | 212 | 8 | 224 | 1.75e-42 | 147 |
MsaG039416 | AT1G26260.3 | 48.171 | 164 | 76 | 2 | 104 | 258 | 94 | 257 | 4.51e-42 | 149 |
MsaG039416 | AT1G26260.5 | 48.171 | 164 | 76 | 2 | 104 | 258 | 123 | 286 | 5.28e-42 | 150 |
MsaG039416 | AT4G34530.1 | 62.393 | 117 | 36 | 1 | 166 | 282 | 165 | 273 | 5.82e-42 | 149 |
MsaG039416 | AT3G23690.1 | 48.588 | 177 | 70 | 5 | 129 | 287 | 143 | 316 | 4.11e-40 | 145 |
MsaG039416 | AT5G48560.2 | 73.333 | 90 | 23 | 1 | 170 | 258 | 298 | 387 | 1.55e-39 | 145 |
MsaG039416 | AT5G48560.1 | 73.333 | 90 | 23 | 1 | 170 | 258 | 298 | 387 | 2.17e-39 | 145 |
MsaG039416 | AT5G50915.3 | 47.368 | 171 | 78 | 6 | 140 | 298 | 97 | 267 | 1.58e-37 | 135 |
MsaG039416 | AT5G50915.4 | 47.368 | 171 | 78 | 6 | 140 | 298 | 97 | 267 | 1.58e-37 | 135 |
MsaG039416 | AT1G59640.1 | 77.215 | 79 | 18 | 0 | 170 | 248 | 133 | 211 | 1.77e-37 | 135 |
MsaG039416 | AT4G36540.2 | 51.938 | 129 | 62 | 0 | 128 | 256 | 96 | 224 | 3.71e-37 | 135 |
MsaG039416 | AT4G36540.1 | 51.938 | 129 | 62 | 0 | 128 | 256 | 96 | 224 | 3.88e-37 | 135 |
MsaG039416 | AT2G18300.1 | 52.672 | 131 | 54 | 3 | 130 | 252 | 134 | 264 | 4.23e-37 | 136 |
MsaG039416 | AT5G50915.1 | 49.682 | 157 | 67 | 6 | 140 | 284 | 97 | 253 | 4.31e-37 | 135 |
MsaG039416 | AT5G50915.2 | 49.682 | 157 | 67 | 6 | 140 | 284 | 97 | 253 | 4.31e-37 | 135 |
MsaG039416 | AT2G18300.2 | 52.672 | 131 | 54 | 3 | 130 | 252 | 134 | 264 | 4.36e-37 | 136 |
MsaG039416 | AT2G18300.3 | 52.672 | 131 | 54 | 3 | 130 | 252 | 134 | 264 | 1.01e-36 | 135 |
MsaG039416 | AT1G59640.2 | 77.215 | 79 | 18 | 0 | 170 | 248 | 133 | 211 | 1.46e-36 | 135 |
MsaG039416 | AT5G62610.2 | 50.370 | 135 | 50 | 4 | 170 | 303 | 150 | 268 | 6.34e-33 | 124 |
MsaG039416 | AT5G62610.1 | 50.370 | 135 | 50 | 4 | 170 | 303 | 150 | 268 | 6.34e-33 | 124 |
MsaG039416 | AT1G18400.2 | 68.750 | 80 | 25 | 0 | 171 | 250 | 143 | 222 | 1.95e-31 | 119 |
MsaG039416 | AT1G73830.1 | 68.354 | 79 | 25 | 0 | 172 | 250 | 146 | 224 | 3.72e-31 | 118 |
MsaG039416 | AT1G73830.2 | 68.354 | 79 | 25 | 0 | 172 | 250 | 146 | 224 | 3.87e-31 | 118 |
MsaG039416 | AT1G18400.1 | 68.750 | 80 | 25 | 0 | 171 | 250 | 143 | 222 | 4.57e-31 | 118 |
MsaG039416 | AT1G25330.1 | 50.427 | 117 | 56 | 1 | 136 | 250 | 65 | 181 | 7.64e-30 | 114 |
MsaG039416 | AT4G30980.1 | 53.409 | 88 | 38 | 2 | 153 | 238 | 108 | 194 | 3.50e-18 | 84.3 |
MsaG039416 | AT4G30980.2 | 53.409 | 88 | 38 | 2 | 153 | 238 | 156 | 242 | 4.64e-18 | 84.3 |
MsaG039416 | AT5G58010.1 | 55.556 | 81 | 31 | 2 | 172 | 248 | 98 | 177 | 7.02e-18 | 83.2 |
MsaG039416 | AT2G24260.2 | 62.121 | 66 | 24 | 1 | 173 | 238 | 35 | 99 | 1.32e-17 | 81.6 |
MsaG039416 | AT2G24260.1 | 62.121 | 66 | 24 | 1 | 173 | 238 | 138 | 202 | 3.76e-17 | 81.6 |
MsaG039416 | AT2G20180.7 | 40.179 | 112 | 52 | 3 | 130 | 238 | 172 | 271 | 1.00e-14 | 75.1 |
MsaG039416 | AT2G20180.1 | 40.179 | 112 | 52 | 3 | 130 | 238 | 172 | 271 | 1.00e-14 | 75.1 |
MsaG039416 | AT2G20180.5 | 40.179 | 112 | 52 | 3 | 130 | 238 | 172 | 271 | 1.00e-14 | 75.1 |
MsaG039416 | AT2G20180.4 | 40.179 | 112 | 52 | 3 | 130 | 238 | 243 | 342 | 1.23e-14 | 75.1 |
MsaG039416 | AT2G20180.6 | 40.179 | 112 | 52 | 3 | 130 | 238 | 243 | 342 | 1.23e-14 | 75.1 |
MsaG039416 | AT2G20180.2 | 40.179 | 112 | 52 | 3 | 130 | 238 | 243 | 342 | 1.23e-14 | 75.1 |
MsaG039416 | AT2G20180.3 | 40.179 | 112 | 52 | 3 | 130 | 238 | 243 | 342 | 1.23e-14 | 75.1 |
MsaG039416 | AT2G20180.8 | 39.450 | 109 | 51 | 3 | 130 | 235 | 243 | 339 | 2.30e-13 | 70.5 |
MsaG039416 | AT1G09530.3 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT1G09530.2 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT1G09530.5 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT1G09530.1 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT1G09530.4 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT1G09530.6 | 42.169 | 83 | 44 | 2 | 159 | 238 | 320 | 401 | 5.75e-13 | 70.1 |
MsaG039416 | AT2G42280.1 | 42.222 | 90 | 46 | 2 | 152 | 236 | 254 | 342 | 1.57e-12 | 68.2 |
MsaG039416 | AT4G09180.1 | 48.485 | 66 | 34 | 0 | 172 | 237 | 183 | 248 | 2.29e-12 | 66.6 |
MsaG039416 | AT2G42280.3 | 37.143 | 105 | 60 | 2 | 152 | 251 | 254 | 357 | 9.54e-12 | 65.9 |
MsaG039416 | AT4G28800.1 | 41.096 | 73 | 42 | 1 | 176 | 248 | 252 | 323 | 1.29e-11 | 65.9 |
MsaG039416 | AT2G46970.1 | 38.710 | 93 | 49 | 3 | 158 | 245 | 205 | 294 | 1.85e-11 | 65.1 |
MsaG039416 | AT2G46970.3 | 38.710 | 93 | 49 | 3 | 158 | 245 | 183 | 272 | 2.11e-11 | 65.1 |
MsaG039416 | AT2G46970.2 | 41.250 | 80 | 41 | 2 | 171 | 245 | 185 | 263 | 2.35e-11 | 64.7 |
MsaG039416 | AT1G35460.1 | 46.269 | 67 | 36 | 0 | 171 | 237 | 179 | 245 | 2.71e-11 | 63.5 |
MsaG039416 | AT2G43140.1 | 46.970 | 66 | 35 | 0 | 171 | 236 | 132 | 197 | 4.94e-11 | 62.0 |
MsaG039416 | AT4G28815.2 | 46.552 | 58 | 30 | 1 | 176 | 233 | 71 | 127 | 5.84e-11 | 62.0 |
MsaG039416 | AT4G28790.1 | 41.667 | 72 | 41 | 1 | 176 | 247 | 274 | 344 | 7.50e-11 | 63.2 |
MsaG039416 | AT4G02590.3 | 56.061 | 66 | 28 | 1 | 173 | 238 | 83 | 147 | 8.92e-11 | 62.0 |
MsaG039416 | AT4G02590.2 | 56.061 | 66 | 28 | 1 | 173 | 238 | 146 | 210 | 9.63e-11 | 62.4 |
MsaG039416 | AT4G02590.1 | 56.061 | 66 | 28 | 1 | 173 | 238 | 146 | 210 | 9.63e-11 | 62.4 |
Find 81 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACTGTTGAGTGGCATTTC+TGG | 0.127241 | 7:+88840352 | None:intergenic |
CGAAGAAATTCAAGGAATTA+TGG | 0.209968 | 7:-88845317 | MsaT039416.1:CDS |
TTTACAGGGGTCGTCTTTAT+TGG | 0.234328 | 7:-88840416 | MsaT039416.1:intron |
CTCTGATTCTTGTTCTCAGC+TGG | 0.252978 | 7:+88844995 | None:intergenic |
AAATTTCCGTTTGAAGAGTT+TGG | 0.262828 | 7:+88845187 | None:intergenic |
ATCTGGAACGGCGTTGGTTC+TGG | 0.271634 | 7:-88841756 | MsaT039416.1:CDS |
TTTCAACTTAGACAGGTTAT+TGG | 0.276317 | 7:-88841073 | MsaT039416.1:CDS |
TCTAAGTTGAAATCAATTCT+TGG | 0.318421 | 7:+88841084 | None:intergenic |
GTTTGAAGAGTTTGGGAGAT+AGG | 0.336002 | 7:+88845195 | None:intergenic |
TATAACTCCTCAGCAAATTC+AGG | 0.338128 | 7:-88840220 | MsaT039416.1:intron |
AATTTCCGTTTGAAGAGTTT+GGG | 0.358426 | 7:+88845188 | None:intergenic |
CCCTTCCCCAGAGTGGTTGA+TGG | 0.366276 | 7:+88840290 | None:intergenic |
GGGAGATAGGGTTTCTGCTC+AGG | 0.375415 | 7:+88845208 | None:intergenic |
CTAAGTTGAAATCAATTCTT+GGG | 0.378584 | 7:+88841085 | None:intergenic |
TAGCGCCATGGTTACGCCTT+TGG | 0.380197 | 7:-88840380 | MsaT039416.1:CDS |
GCAGATCTTATCAATGAAAC+TGG | 0.387421 | 7:-88841118 | MsaT039416.1:intron |
CATGATTTACTACAGATATC+TGG | 0.387496 | 7:-88841773 | MsaT039416.1:intron |
GAGAAAAGAGCGAGAGAAGA+AGG | 0.413896 | 7:-88844963 | MsaT039416.1:intron |
AGGAATTATGGTTCCGGCGC+CGG | 0.419529 | 7:-88845305 | MsaT039416.1:CDS |
TCAATCAACGCGGCGTTAGT+AGG | 0.431048 | 7:+88845157 | None:intergenic |
CAATTTGACGAAGAAATTCA+AGG | 0.451405 | 7:-88845325 | MsaT039416.1:CDS |
AATTCAAGGAATTATGGTTC+CGG | 0.452402 | 7:-88845311 | MsaT039416.1:CDS |
TTGAACAGAATCGTCGTGAA+TGG | 0.467546 | 7:+88845345 | None:intergenic |
AAACGGACCTTGTCGCAACC+TGG | 0.470484 | 7:+88844563 | None:intergenic |
CTCGACGCAAGAGTGTGTTT+CGG | 0.479758 | 7:-88845020 | MsaT039416.1:CDS |
GAATTGATTTCAACTTAGAC+AGG | 0.479828 | 7:-88841080 | MsaT039416.1:CDS |
ATGCATTCCATCAACCACTC+TGG | 0.480094 | 7:-88840297 | MsaT039416.1:CDS |
GCTTCCACCTACGCTGGCGG+TGG | 0.481441 | 7:-88845245 | MsaT039416.1:CDS |
CAAGCTACAGTAGGATTAAG+TGG | 0.482474 | 7:-88845370 | MsaT039416.1:CDS |
TGCATTCCATCAACCACTCT+GGG | 0.482872 | 7:-88840296 | MsaT039416.1:CDS |
GCACTCAAATCAATTGAAGA+TGG | 0.483411 | 7:-88839836 | MsaT039416.1:CDS |
TTTGAAGAGTTTGGGAGATA+GGG | 0.487543 | 7:+88845196 | None:intergenic |
TCCATCAACCACTCTGGGGA+AGG | 0.505255 | 7:-88840291 | MsaT039416.1:CDS |
ACCATCGCCGATGAAACTTC+CGG | 0.506458 | 7:-88844822 | MsaT039416.1:CDS |
TATGGTTCCGGCGCCGGCAC+CGG | 0.508288 | 7:-88845299 | MsaT039416.1:CDS |
CGCCGGAGAGAATTCTTCAC+CGG | 0.511072 | 7:-88845110 | MsaT039416.1:CDS |
AGCTCCACCGCCAGCGTAGG+TGG | 0.529657 | 7:+88845241 | None:intergenic |
GGGAAGCTTCTCACCGTCAC+CGG | 0.529780 | 7:+88844803 | None:intergenic |
TATCTCCCAAACTCTTCAAA+CGG | 0.531243 | 7:-88845193 | MsaT039416.1:CDS |
AGCCACTGATAGCCATAGCT+TGG | 0.534714 | 7:-88844751 | MsaT039416.1:CDS |
TCGTTCTTCACACTTTCCAC+CGG | 0.535427 | 7:+88845070 | None:intergenic |
GGCATTTCTGGCCACACCAA+AGG | 0.537270 | 7:+88840364 | None:intergenic |
GCCGATGAAACTTCCGGTGA+CGG | 0.538875 | 7:-88844816 | MsaT039416.1:CDS |
GCGAAATTCTCAGTGTTCGC+CGG | 0.539326 | 7:-88845127 | MsaT039416.1:CDS |
AACGGACCTTGTCGCAACCT+GGG | 0.539729 | 7:+88844564 | None:intergenic |
ACACACTCTTGCGTCGAGCA+AGG | 0.543799 | 7:+88845025 | None:intergenic |
ACCGGAAGTTTCATCGGCGA+TGG | 0.543884 | 7:+88844821 | None:intergenic |
ACCGTCACCGGAAGTTTCAT+CGG | 0.551160 | 7:+88844815 | None:intergenic |
GGCGAACACTGAGAATTTCG+CGG | 0.552144 | 7:+88845129 | None:intergenic |
TCGGACGCGAACGTGAACAT+AGG | 0.566749 | 7:+88844782 | None:intergenic |
CGGACGCGAACGTGAACATA+GGG | 0.568296 | 7:+88844783 | None:intergenic |
TTACTCGTTCTGCCAAGCTA+TGG | 0.571179 | 7:+88844739 | None:intergenic |
CCATCAACCACTCTGGGGAA+GGG | 0.572516 | 7:-88840290 | MsaT039416.1:CDS |
ACAGATATCTGGAACGGCGT+TGG | 0.584492 | 7:-88841762 | MsaT039416.1:intron |
TCATCTTCCCTTCCCCAGAG+TGG | 0.595071 | 7:+88840283 | None:intergenic |
CCATGGTTACGCCTTTGGTG+TGG | 0.598563 | 7:-88840375 | MsaT039416.1:CDS |
GCAAACTCTACAACGTCAAG+TGG | 0.604066 | 7:-88841714 | MsaT039416.1:CDS |
TCCCGGTGAAGAATTCTCTC+CGG | 0.612625 | 7:+88845108 | None:intergenic |
GCCGGAGAGAATTCTTCACC+GGG | 0.619109 | 7:-88845109 | MsaT039416.1:CDS |
TGCTGTCTGTTACTGTTGAG+TGG | 0.619274 | 7:+88840343 | None:intergenic |
TGATCTACCTGAATTTGCTG+AGG | 0.620278 | 7:+88840213 | None:intergenic |
AGTAGCTCCACCGCCAGCGT+AGG | 0.621042 | 7:+88845238 | None:intergenic |
TGCCAAGCTATGGCTATCAG+TGG | 0.622735 | 7:+88844749 | None:intergenic |
GTTAGAGCTTCCACCTACGC+TGG | 0.629584 | 7:-88845251 | MsaT039416.1:CDS |
ATTCTTCACCGGGAGATGAG+CGG | 0.630112 | 7:-88845099 | MsaT039416.1:CDS |
CAGTAACTTACCTAGCGCCA+TGG | 0.633856 | 7:-88840392 | MsaT039416.1:CDS |
GGATTCGAATCAGTCTCTTG+AGG | 0.634229 | 7:+88845046 | None:intergenic |
AACTCTACAACGTCAAGTGG+AGG | 0.635936 | 7:-88841711 | MsaT039416.1:intron |
TCAATGGAACAAGCTACAGT+AGG | 0.638623 | 7:-88845379 | MsaT039416.1:CDS |
AAAGGCGTAACCATGGCGCT+AGG | 0.639275 | 7:+88840382 | None:intergenic |
TATCAGTGGCTTGACCTCGT+CGG | 0.645396 | 7:+88844763 | None:intergenic |
AGAGCTTCCACCTACGCTGG+CGG | 0.646544 | 7:-88845248 | MsaT039416.1:CDS |
CCACACCAAAGGCGTAACCA+TGG | 0.654182 | 7:+88840375 | None:intergenic |
GTTCACGTTCGCGTCCGACG+AGG | 0.673051 | 7:-88844777 | MsaT039416.1:CDS |
TTTACTACAGATATCTGGAA+CGG | 0.675738 | 7:-88841768 | MsaT039416.1:intron |
GCTGGTCCCAGGTTGCGACA+AGG | 0.681421 | 7:-88844570 | MsaT039416.1:intron |
CGCGGCGCGTTCAATCAACG+CGG | 0.684814 | 7:+88845147 | None:intergenic |
GACGTTGTAGAGTTTGCACA+TGG | 0.695558 | 7:+88841720 | None:intergenic |
GACAGCATTATCAACAACAG+TGG | 0.705453 | 7:-88840327 | MsaT039416.1:CDS |
GCATTCCATCAACCACTCTG+GGG | 0.725229 | 7:-88840295 | MsaT039416.1:CDS |
AGGTGGAAGCTCTAACAGTG+CGG | 0.757659 | 7:+88845258 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 88839828 | 88845398 | 88839828 | ID=MsaG039416 |
Chr7 | mRNA | 88839828 | 88845398 | 88839828 | ID=MsaT039416.1;Parent=MsaG039416 |
Chr7 | exon | 88839828 | 88839865 | 88839828 | ID=MsaT039416.1.exon7;Parent=MsaT039416.1 |
Chr7 | CDS | 88839828 | 88839865 | 88839828 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88840221 | 88840431 | 88840221 | ID=MsaT039416.1.exon6;Parent=MsaT039416.1 |
Chr7 | CDS | 88840221 | 88840431 | 88840221 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88841065 | 88841136 | 88841065 | ID=MsaT039416.1.exon5;Parent=MsaT039416.1 |
Chr7 | CDS | 88841065 | 88841136 | 88841065 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88841712 | 88841780 | 88841712 | ID=MsaT039416.1.exon4;Parent=MsaT039416.1 |
Chr7 | CDS | 88841712 | 88841780 | 88841712 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88844571 | 88844636 | 88844571 | ID=MsaT039416.1.exon3;Parent=MsaT039416.1 |
Chr7 | CDS | 88844571 | 88844636 | 88844571 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88844743 | 88844874 | 88844743 | ID=MsaT039416.1.exon2;Parent=MsaT039416.1 |
Chr7 | CDS | 88844743 | 88844874 | 88844743 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Chr7 | exon | 88844964 | 88845398 | 88844964 | ID=MsaT039416.1.exon1;Parent=MsaT039416.1 |
Chr7 | CDS | 88844964 | 88845398 | 88844964 | ID=cds.MsaT039416.1;Parent=MsaT039416.1 |
Gene Sequence |
Protein sequence |