Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039421 | XP_003625199.1 | 90.343 | 321 | 22 | 3 | 1 | 314 | 1 | 319 | 0.0 | 587 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039421 | sp|Q66GR3|BH130_ARATH | 48.548 | 241 | 105 | 6 | 83 | 314 | 125 | 355 | 3.10e-48 | 168 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039421 | tr|G7KUF7|G7KUF7_MEDTR | 90.343 | 321 | 22 | 3 | 1 | 314 | 1 | 319 | 0.0 | 587 |
Gene ID | Type | Classification |
---|---|---|
MsaG039421 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039421 | MtrunA17_Chr7g0258181 | 90.343 | 321 | 22 | 3 | 1 | 314 | 1 | 319 | 0.0 | 587 |
MsaG039421 | MtrunA17_Chr1g0174271 | 47.043 | 372 | 125 | 10 | 4 | 310 | 6 | 370 | 7.15e-85 | 260 |
MsaG039421 | MtrunA17_Chr4g0032951 | 38.314 | 261 | 132 | 3 | 80 | 314 | 174 | 431 | 1.14e-48 | 168 |
MsaG039421 | MtrunA17_Chr2g0329041 | 41.791 | 268 | 104 | 10 | 82 | 314 | 157 | 407 | 8.13e-47 | 162 |
MsaG039421 | MtrunA17_Chr3g0087771 | 39.149 | 235 | 126 | 4 | 87 | 310 | 166 | 394 | 4.76e-42 | 150 |
MsaG039421 | MtrunA17_Chr8g0351881 | 35.430 | 302 | 139 | 5 | 49 | 310 | 103 | 388 | 2.22e-34 | 129 |
MsaG039421 | MtrunA17_Chr4g0014771 | 69.620 | 79 | 24 | 0 | 232 | 310 | 112 | 190 | 1.67e-33 | 122 |
MsaG039421 | MtrunA17_Chr1g0213791 | 50.407 | 123 | 58 | 2 | 193 | 314 | 221 | 341 | 8.68e-30 | 115 |
MsaG039421 | MtrunA17_Chr1g0152131 | 52.113 | 71 | 34 | 0 | 238 | 308 | 260 | 330 | 5.91e-16 | 77.8 |
MsaG039421 | MtrunA17_Chr4g0074161 | 54.412 | 68 | 30 | 1 | 238 | 305 | 206 | 272 | 8.24e-16 | 77.4 |
MsaG039421 | MtrunA17_Chr1g0190731 | 50.667 | 75 | 36 | 1 | 231 | 305 | 186 | 259 | 1.60e-15 | 76.3 |
MsaG039421 | MtrunA17_Chr5g0421111 | 50.000 | 74 | 37 | 0 | 238 | 311 | 365 | 438 | 2.91e-15 | 76.3 |
MsaG039421 | MtrunA17_Chr3g0131771 | 53.731 | 67 | 31 | 0 | 238 | 304 | 147 | 213 | 4.06e-15 | 74.7 |
MsaG039421 | MtrunA17_Chr7g0234761 | 48.649 | 74 | 38 | 0 | 238 | 311 | 317 | 390 | 7.49e-15 | 75.1 |
MsaG039421 | MtrunA17_Chr3g0144641 | 50.000 | 74 | 37 | 0 | 238 | 311 | 191 | 264 | 1.52e-14 | 73.6 |
MsaG039421 | MtrunA17_Chr8g0365941 | 50.725 | 69 | 34 | 0 | 238 | 306 | 305 | 373 | 2.90e-14 | 73.2 |
MsaG039421 | MtrunA17_Chr8g0339091 | 45.946 | 74 | 40 | 0 | 238 | 311 | 291 | 364 | 3.65e-14 | 72.8 |
MsaG039421 | MtrunA17_Chr8g0385911 | 49.275 | 69 | 35 | 0 | 238 | 306 | 145 | 213 | 1.27e-13 | 70.5 |
MsaG039421 | MtrunA17_Chr4g0035101 | 45.679 | 81 | 42 | 1 | 231 | 311 | 138 | 216 | 1.39e-13 | 70.5 |
MsaG039421 | MtrunA17_Chr8g0363921 | 47.761 | 67 | 35 | 0 | 238 | 304 | 151 | 217 | 7.96e-13 | 67.8 |
MsaG039421 | MtrunA17_Chr7g0258161 | 41.892 | 74 | 43 | 0 | 238 | 311 | 173 | 246 | 1.38e-11 | 64.7 |
MsaG039421 | MtrunA17_Chr5g0415291 | 46.269 | 67 | 36 | 0 | 238 | 304 | 112 | 178 | 1.61e-11 | 63.2 |
MsaG039421 | MtrunA17_Chr1g0152651 | 53.846 | 65 | 29 | 1 | 239 | 303 | 275 | 338 | 3.89e-11 | 63.2 |
MsaG039421 | MtrunA17_Chr6g0484271 | 44.776 | 67 | 37 | 0 | 238 | 304 | 155 | 221 | 4.37e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039421 | AT2G42280.1 | 48.548 | 241 | 105 | 6 | 83 | 314 | 125 | 355 | 3.15e-49 | 168 |
MsaG039421 | AT2G42280.3 | 48.899 | 227 | 97 | 6 | 83 | 300 | 125 | 341 | 7.24e-43 | 151 |
MsaG039421 | AT1G51140.1 | 57.983 | 119 | 43 | 3 | 192 | 310 | 265 | 376 | 2.97e-39 | 142 |
MsaG039421 | AT2G43140.1 | 57.143 | 105 | 44 | 1 | 207 | 310 | 102 | 206 | 1.21e-34 | 125 |
MsaG039421 | AT2G43140.2 | 57.143 | 105 | 44 | 1 | 207 | 310 | 199 | 303 | 4.38e-34 | 127 |
MsaG039421 | AT1G35460.1 | 61.176 | 85 | 33 | 0 | 230 | 314 | 173 | 257 | 3.53e-32 | 120 |
MsaG039421 | AT1G05805.1 | 56.731 | 104 | 43 | 2 | 208 | 310 | 253 | 355 | 1.21e-30 | 119 |
MsaG039421 | AT4G09180.1 | 59.341 | 91 | 35 | 1 | 224 | 314 | 172 | 260 | 5.69e-30 | 115 |
MsaG039421 | AT1G35460.2 | 76.596 | 47 | 11 | 0 | 230 | 276 | 173 | 219 | 5.02e-18 | 82.0 |
MsaG039421 | AT2G24260.2 | 51.282 | 78 | 37 | 1 | 228 | 305 | 25 | 101 | 3.12e-16 | 77.4 |
MsaG039421 | AT5G58010.1 | 54.412 | 68 | 30 | 1 | 238 | 305 | 99 | 165 | 7.23e-16 | 77.0 |
MsaG039421 | AT2G24260.1 | 51.282 | 78 | 37 | 1 | 228 | 305 | 128 | 204 | 8.24e-16 | 77.4 |
MsaG039421 | AT4G30980.1 | 54.412 | 68 | 30 | 1 | 238 | 305 | 130 | 196 | 2.48e-15 | 75.5 |
MsaG039421 | AT2G42280.2 | 40.659 | 182 | 89 | 6 | 83 | 255 | 125 | 296 | 2.60e-15 | 75.5 |
MsaG039421 | AT4G30980.2 | 54.412 | 68 | 30 | 1 | 238 | 305 | 178 | 244 | 3.23e-15 | 75.9 |
MsaG039421 | AT1G10120.2 | 53.623 | 69 | 32 | 0 | 238 | 306 | 206 | 274 | 5.96e-15 | 75.1 |
MsaG039421 | AT1G10120.1 | 53.623 | 69 | 32 | 0 | 238 | 306 | 206 | 274 | 5.96e-15 | 75.1 |
MsaG039421 | AT4G34530.1 | 48.649 | 74 | 38 | 0 | 238 | 311 | 172 | 245 | 8.28e-15 | 74.3 |
MsaG039421 | AT5G50915.1 | 53.731 | 67 | 31 | 0 | 238 | 304 | 136 | 202 | 1.33e-14 | 73.2 |
MsaG039421 | AT5G50915.2 | 53.731 | 67 | 31 | 0 | 238 | 304 | 136 | 202 | 1.33e-14 | 73.2 |
MsaG039421 | AT1G68920.3 | 49.296 | 71 | 36 | 0 | 238 | 308 | 302 | 372 | 1.41e-14 | 74.3 |
MsaG039421 | AT5G50915.3 | 53.731 | 67 | 31 | 0 | 238 | 304 | 136 | 202 | 1.42e-14 | 72.8 |
MsaG039421 | AT5G50915.4 | 53.731 | 67 | 31 | 0 | 238 | 304 | 136 | 202 | 1.42e-14 | 72.8 |
MsaG039421 | AT1G68920.1 | 49.296 | 71 | 36 | 0 | 238 | 308 | 303 | 373 | 1.56e-14 | 74.3 |
MsaG039421 | AT1G68920.4 | 49.296 | 71 | 36 | 0 | 238 | 308 | 303 | 373 | 1.56e-14 | 74.3 |
MsaG039421 | AT1G68920.2 | 49.296 | 71 | 36 | 0 | 238 | 308 | 303 | 373 | 1.56e-14 | 74.3 |
MsaG039421 | AT3G07340.1 | 47.297 | 74 | 39 | 0 | 238 | 311 | 258 | 331 | 4.58e-14 | 72.8 |
MsaG039421 | AT3G07340.2 | 47.297 | 74 | 39 | 0 | 238 | 311 | 258 | 331 | 4.89e-14 | 72.8 |
MsaG039421 | AT1G26260.4 | 52.239 | 67 | 32 | 0 | 238 | 304 | 223 | 289 | 6.27e-14 | 72.0 |
MsaG039421 | AT1G26260.1 | 52.239 | 67 | 32 | 0 | 238 | 304 | 223 | 289 | 6.27e-14 | 72.0 |
MsaG039421 | AT1G26260.6 | 52.239 | 67 | 32 | 0 | 238 | 304 | 223 | 289 | 6.27e-14 | 72.0 |
MsaG039421 | AT1G26260.2 | 52.239 | 67 | 32 | 0 | 238 | 304 | 223 | 289 | 6.27e-14 | 72.0 |
MsaG039421 | AT1G26260.5 | 52.239 | 67 | 32 | 0 | 238 | 304 | 201 | 267 | 6.64e-14 | 72.0 |
MsaG039421 | AT1G26260.3 | 52.239 | 67 | 32 | 0 | 238 | 304 | 172 | 238 | 6.95e-14 | 71.6 |
MsaG039421 | AT1G25330.1 | 47.761 | 67 | 35 | 0 | 238 | 304 | 104 | 170 | 1.11e-13 | 69.7 |
MsaG039421 | AT5G48560.1 | 49.254 | 67 | 34 | 0 | 238 | 304 | 301 | 367 | 3.79e-13 | 70.1 |
MsaG039421 | AT5G48560.2 | 49.254 | 67 | 34 | 0 | 238 | 304 | 301 | 367 | 3.96e-13 | 70.1 |
MsaG039421 | AT3G23690.1 | 45.946 | 74 | 40 | 0 | 238 | 311 | 191 | 264 | 5.06e-13 | 69.3 |
MsaG039421 | AT4G36540.1 | 44.156 | 77 | 41 | 1 | 228 | 304 | 133 | 207 | 7.67e-13 | 68.2 |
MsaG039421 | AT4G36540.2 | 44.156 | 77 | 41 | 1 | 228 | 304 | 133 | 207 | 8.14e-13 | 68.2 |
MsaG039421 | AT1G18400.2 | 47.761 | 67 | 35 | 0 | 238 | 304 | 145 | 211 | 2.05e-12 | 66.2 |
MsaG039421 | AT1G18400.1 | 47.761 | 67 | 35 | 0 | 238 | 304 | 145 | 211 | 3.34e-12 | 65.9 |
MsaG039421 | AT1G59640.1 | 47.761 | 67 | 35 | 0 | 238 | 304 | 136 | 202 | 3.69e-12 | 65.9 |
MsaG039421 | AT2G18300.2 | 46.377 | 69 | 37 | 0 | 238 | 306 | 185 | 253 | 3.72e-12 | 66.6 |
MsaG039421 | AT2G18300.1 | 46.377 | 69 | 37 | 0 | 238 | 306 | 185 | 253 | 3.92e-12 | 66.6 |
MsaG039421 | AT2G42300.1 | 43.243 | 74 | 42 | 0 | 238 | 311 | 185 | 258 | 4.31e-12 | 66.2 |
MsaG039421 | AT3G57800.2 | 43.243 | 74 | 42 | 0 | 238 | 311 | 204 | 277 | 4.64e-12 | 66.6 |
MsaG039421 | AT2G18300.3 | 46.377 | 69 | 37 | 0 | 238 | 306 | 185 | 253 | 4.89e-12 | 66.2 |
MsaG039421 | AT1G73830.2 | 44.776 | 67 | 37 | 0 | 238 | 304 | 147 | 213 | 5.23e-12 | 65.5 |
MsaG039421 | AT1G73830.1 | 44.776 | 67 | 37 | 0 | 238 | 304 | 147 | 213 | 5.23e-12 | 65.5 |
MsaG039421 | AT2G42300.4 | 43.243 | 74 | 42 | 0 | 238 | 311 | 185 | 258 | 7.34e-12 | 65.1 |
MsaG039421 | AT1G59640.2 | 47.761 | 67 | 35 | 0 | 238 | 304 | 136 | 202 | 1.26e-11 | 65.1 |
MsaG039421 | AT5G62610.2 | 44.776 | 67 | 37 | 0 | 238 | 304 | 153 | 219 | 2.93e-11 | 63.5 |
MsaG039421 | AT5G62610.1 | 44.776 | 67 | 37 | 0 | 238 | 304 | 153 | 219 | 2.93e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACGAAGCAACCTTGAATT+TGG | 0.214893 | 7:-88912815 | None:intergenic |
TTGTCACCTTTATGATTAAA+AGG | 0.243027 | 7:-88912926 | None:intergenic |
CTCAAGGAAGAAGGACTTCT+TGG | 0.270896 | 7:-88913947 | None:intergenic |
CTTTATGATTAAAAGGATTA+TGG | 0.272914 | 7:-88912919 | None:intergenic |
ATCTACCTTTAGAGAATTCA+TGG | 0.283481 | 7:+88912895 | MsaT039421.1:CDS |
AACATATTGAACAATCAAAT+TGG | 0.290694 | 7:+88913917 | MsaT039421.1:CDS |
ACCCTTTCGGCAAGGCTTCT+AGG | 0.305032 | 7:-88914345 | None:intergenic |
CCGAGTTCTTCTTACCCTTT+CGG | 0.326997 | 7:-88914358 | None:intergenic |
ATGCTGCTCGGAACAGAATC+TGG | 0.330247 | 7:-88914294 | None:intergenic |
AATGTTTATTGTGGAGAATT+TGG | 0.338878 | 7:+88914263 | MsaT039421.1:CDS |
AATGAGGATGCTCAATATTA+TGG | 0.342968 | 7:+88914049 | MsaT039421.1:CDS |
ATTCTGACCTTATCAATGTT+TGG | 0.345820 | 7:-88914417 | None:intergenic |
GAAGGTTGTGCTACAAATTC+TGG | 0.353997 | 7:+88912860 | MsaT039421.1:CDS |
AACAACAACATCATCTCCTT+TGG | 0.393746 | 7:+88913076 | MsaT039421.1:CDS |
TCCTAGAAGCCTTGCCGAAA+GGG | 0.399735 | 7:+88914344 | MsaT039421.1:CDS |
AACATCATCTCCTTTGGAAA+TGG | 0.414195 | 7:+88913082 | MsaT039421.1:CDS |
CTCTTTGCTCTGATGCTGCT+CGG | 0.438402 | 7:-88914306 | None:intergenic |
ACCACTCTGTCTTAAAAGAT+TGG | 0.442108 | 7:-88913032 | None:intergenic |
AACAAAACCAACCAAATTCA+AGG | 0.457834 | 7:+88912804 | MsaT039421.1:CDS |
AAAGGAGATGATGTTGTTGT+TGG | 0.459546 | 7:-88913074 | None:intergenic |
TCGGAACAGAATCTGGAAAC+TGG | 0.461159 | 7:-88914287 | None:intergenic |
GGTTGTTCCAAACATTGATA+AGG | 0.462084 | 7:+88914410 | MsaT039421.1:CDS |
CATTTACGATTCTAATGACC+AGG | 0.465979 | 7:+88914081 | MsaT039421.1:CDS |
AGACAGAGTGGTTCCCATGC+TGG | 0.479729 | 7:+88913043 | MsaT039421.1:CDS |
AAAGGTGTTGAAAACTATGA+TGG | 0.487777 | 7:+88913857 | MsaT039421.1:CDS |
CACATCAGAAATGTTAGACT+TGG | 0.499859 | 7:+88914536 | MsaT039421.1:CDS |
AAGACACATGAATTCTCAGC+AGG | 0.502231 | 7:+88912976 | MsaT039421.1:CDS |
TTCTCAGCAGGGTTATAGAA+TGG | 0.503073 | 7:+88912988 | MsaT039421.1:CDS |
ATCATCAGAAATGTTTATTG+TGG | 0.507405 | 7:+88914254 | MsaT039421.1:CDS |
TTGATGTTACTCAGAACGTA+GGG | 0.512000 | 7:+88914181 | MsaT039421.1:intron |
GAAGCAACCTTGAATTTGGT+TGG | 0.517186 | 7:-88912811 | None:intergenic |
GATAACATTCTCAAGGAAGA+AGG | 0.538937 | 7:-88913956 | None:intergenic |
ATCCTAGAAGCCTTGCCGAA+AGG | 0.543719 | 7:+88914343 | MsaT039421.1:CDS |
ATGGTCCATGAATTCTCTAA+AGG | 0.546307 | 7:-88912900 | None:intergenic |
AACTCTAAAACGAGGAGTGA+TGG | 0.547308 | 7:+88913983 | MsaT039421.1:CDS |
TTCTTCTTACCCTTTCGGCA+AGG | 0.550067 | 7:-88914353 | None:intergenic |
CCGAAAGGGTAAGAAGAACT+CGG | 0.565752 | 7:+88914358 | MsaT039421.1:CDS |
CTCCTTGTCTTCGATCATCA+CGG | 0.577461 | 7:-88914021 | None:intergenic |
AAAACGAGGAGTGATGGCAT+TGG | 0.578334 | 7:+88913989 | MsaT039421.1:CDS |
TCAAGTATCAAACAAGCTGA+AGG | 0.598545 | 7:+88912842 | MsaT039421.1:CDS |
GCAGGGTATGAATCTATGAA+AGG | 0.606763 | 7:+88913839 | MsaT039421.1:intron |
TTTGATGTTACTCAGAACGT+AGG | 0.607876 | 7:+88914180 | MsaT039421.1:intron |
AAGGTGTTGAAAACTATGAT+GGG | 0.612325 | 7:+88913858 | MsaT039421.1:CDS |
GTTATGTGATAACATTCTCA+AGG | 0.612399 | 7:-88913963 | None:intergenic |
TACTACAATACCATTTCCAA+AGG | 0.613692 | 7:-88913092 | None:intergenic |
AGCAGCATCAGAGCAAAGAG+AGG | 0.624459 | 7:+88914309 | MsaT039421.1:CDS |
ACGAATGAGAAAATTGCAAG+AGG | 0.630200 | 7:+88914389 | MsaT039421.1:CDS |
TATAGAATGGATCAACACAA+AGG | 0.657311 | 7:+88913001 | MsaT039421.1:CDS |
AGCCGTGATGATCGAAGACA+AGG | 0.662100 | 7:+88914019 | MsaT039421.1:CDS |
GTTGGAGAAATGACCAGCAT+GGG | 0.675608 | 7:-88913056 | None:intergenic |
TGTTGGAGAAATGACCAGCA+TGG | 0.677077 | 7:-88913057 | None:intergenic |
CGTGATGATCGAAGACAAGG+AGG | 0.691311 | 7:+88914022 | MsaT039421.1:CDS |
AGACACATGAATTCTCAGCA+GGG | 0.696388 | 7:+88912977 | MsaT039421.1:CDS |
GATGGGGTGAATGACAGTGA+TGG | 0.701721 | 7:+88913875 | MsaT039421.1:CDS |
TGATGTTACTCAGAACGTAG+GGG | 0.704763 | 7:+88914182 | MsaT039421.1:intron |
AAGACAAGGAGGTAGCAATG+AGG | 0.720936 | 7:+88914033 | MsaT039421.1:CDS |
AGGTGTTGAAAACTATGATG+GGG | 0.756832 | 7:+88913859 | MsaT039421.1:CDS |
TATCACATAACTCTAAAACG+AGG | 0.781502 | 7:+88913975 | MsaT039421.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 88912773 | 88914756 | 88912773 | ID=MsaG039421 |
Chr7 | mRNA | 88912773 | 88914756 | 88912773 | ID=MsaT039421.1;Parent=MsaG039421 |
Chr7 | exon | 88912773 | 88913103 | 88912773 | ID=MsaT039421.1.exon1;Parent=MsaT039421.1 |
Chr7 | CDS | 88912773 | 88913103 | 88912773 | ID=cds.MsaT039421.1;Parent=MsaT039421.1 |
Chr7 | exon | 88913843 | 88914102 | 88913843 | ID=MsaT039421.1.exon2;Parent=MsaT039421.1 |
Chr7 | CDS | 88913843 | 88914102 | 88913843 | ID=cds.MsaT039421.1;Parent=MsaT039421.1 |
Chr7 | exon | 88914195 | 88914431 | 88914195 | ID=MsaT039421.1.exon3;Parent=MsaT039421.1 |
Chr7 | CDS | 88914195 | 88914431 | 88914195 | ID=cds.MsaT039421.1;Parent=MsaT039421.1 |
Chr7 | exon | 88914528 | 88914596 | 88914528 | ID=MsaT039421.1.exon4;Parent=MsaT039421.1 |
Chr7 | CDS | 88914528 | 88914596 | 88914528 | ID=cds.MsaT039421.1;Parent=MsaT039421.1 |
Chr7 | exon | 88914709 | 88914756 | 88914709 | ID=MsaT039421.1.exon5;Parent=MsaT039421.1 |
Chr7 | CDS | 88914709 | 88914756 | 88914709 | ID=cds.MsaT039421.1;Parent=MsaT039421.1 |
Gene Sequence |
Protein sequence |