AlfalfaGEDB | MsaG039421

M. sativa ssp. caerulea / MsaG039421

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039421	XP_003625199.1	90.343	321	22	3	1	314	1	319	0.0	587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039421	sp\|Q66GR3\|BH130_ARATH	48.548	241	105	6	83	314	125	355	3.10e-48	168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039421	tr\|G7KUF7\|G7KUF7_MEDTR	90.343	321	22	3	1	314	1	319	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
MsaG039421	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039421	MtrunA17_Chr7g0258181	90.343	321	22	3	1	314	1	319	0.0	587
MsaG039421	MtrunA17_Chr1g0174271	47.043	372	125	10	4	310	6	370	7.15e-85	260
MsaG039421	MtrunA17_Chr4g0032951	38.314	261	132	3	80	314	174	431	1.14e-48	168
MsaG039421	MtrunA17_Chr2g0329041	41.791	268	104	10	82	314	157	407	8.13e-47	162
MsaG039421	MtrunA17_Chr3g0087771	39.149	235	126	4	87	310	166	394	4.76e-42	150
MsaG039421	MtrunA17_Chr8g0351881	35.430	302	139	5	49	310	103	388	2.22e-34	129
MsaG039421	MtrunA17_Chr4g0014771	69.620	79	24	0	232	310	112	190	1.67e-33	122
MsaG039421	MtrunA17_Chr1g0213791	50.407	123	58	2	193	314	221	341	8.68e-30	115
MsaG039421	MtrunA17_Chr1g0152131	52.113	71	34	0	238	308	260	330	5.91e-16	77.8
MsaG039421	MtrunA17_Chr4g0074161	54.412	68	30	1	238	305	206	272	8.24e-16	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039421	AT2G42280.1	48.548	241	105	6	83	314	125	355	3.15e-49	168
MsaG039421	AT2G42280.3	48.899	227	97	6	83	300	125	341	7.24e-43	151
MsaG039421	AT1G51140.1	57.983	119	43	3	192	310	265	376	2.97e-39	142
MsaG039421	AT2G43140.1	57.143	105	44	1	207	310	102	206	1.21e-34	125
MsaG039421	AT2G43140.2	57.143	105	44	1	207	310	199	303	4.38e-34	127
MsaG039421	AT1G35460.1	61.176	85	33	0	230	314	173	257	3.53e-32	120
MsaG039421	AT1G05805.1	56.731	104	43	2	208	310	253	355	1.21e-30	119
MsaG039421	AT4G09180.1	59.341	91	35	1	224	314	172	260	5.69e-30	115
MsaG039421	AT1G35460.2	76.596	47	11	0	230	276	173	219	5.02e-18	82.0
MsaG039421	AT2G24260.2	51.282	78	37	1	228	305	25	101	3.12e-16	77.4

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGAGTGATGGCAT+TGG	0.578334	7:+88913989	MsaT039421.1:CDS
AAACGAAGCAACCTTGAATT+TGG	0.214893	7:-88912815	None:intergenic
AAAGGAGATGATGTTGTTGT+TGG	0.459546	7:-88913074	None:intergenic
AAAGGTGTTGAAAACTATGA+TGG	0.487777	7:+88913857	MsaT039421.1:CDS
AACAAAACCAACCAAATTCA+AGG	0.457834	7:+88912804	MsaT039421.1:CDS
AACAACAACATCATCTCCTT+TGG	0.393746	7:+88913076	MsaT039421.1:CDS
AACATATTGAACAATCAAAT+TGG	0.290694	7:+88913917	MsaT039421.1:CDS
AACATCATCTCCTTTGGAAA+TGG	0.414195	7:+88913082	MsaT039421.1:CDS
AACTCTAAAACGAGGAGTGA+TGG	0.547308	7:+88913983	MsaT039421.1:CDS
AAGACAAGGAGGTAGCAATG+AGG	0.720936	7:+88914033	MsaT039421.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	88912773	88914756	88912773	ID=MsaG039421
Chr7	mRNA	88912773	88914756	88912773	ID=MsaT039421.1;Parent=MsaG039421
Chr7	exon	88912773	88913103	88912773	ID=MsaT039421.1.exon1;Parent=MsaT039421.1
Chr7	CDS	88912773	88913103	88912773	ID=cds.MsaT039421.1;Parent=MsaT039421.1
Chr7	exon	88913843	88914102	88913843	ID=MsaT039421.1.exon2;Parent=MsaT039421.1
Chr7	CDS	88913843	88914102	88913843	ID=cds.MsaT039421.1;Parent=MsaT039421.1
Chr7	exon	88914195	88914431	88914195	ID=MsaT039421.1.exon3;Parent=MsaT039421.1
Chr7	CDS	88914195	88914431	88914195	ID=cds.MsaT039421.1;Parent=MsaT039421.1
Chr7	exon	88914528	88914596	88914528	ID=MsaT039421.1.exon4;Parent=MsaT039421.1
Chr7	CDS	88914528	88914596	88914528	ID=cds.MsaT039421.1;Parent=MsaT039421.1
Chr7	exon	88914709	88914756	88914709	ID=MsaT039421.1.exon5;Parent=MsaT039421.1
Chr7	CDS	88914709	88914756	88914709	ID=cds.MsaT039421.1;Parent=MsaT039421.1

Gene Sequence

>MsaT039421.1

ATGGATTTGAATTCTCATTATCAACAACTCCAACAAAACCAACCAAATTCAAGGTTGCTTCGTTTTCGTTCAAGTATCAAACAAGCTGAAGGTTGTGCTACAAATTCTGGTGAAACTTCTTCATCTACCTTTAGAGAATTCATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTACGATTCTAATGACCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGCAAAAAGAGCTAAGTGCAGATGCAGAAACAAGAAATGA

Protein sequence

>MsaT039421.1

MDLNSHYQQLQQNQPNSRLLRFRSSIKQAEGCATNSGETSSSTFREFMDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHHLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK*