AlfalfaGEDB | MsaG039449

M. sativa ssp. caerulea / MsaG039449

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039449	XP_003625243.2	88.587	368	21	4	1	356	1	359	0.0	640

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039449	sp\|B8ANX9\|PHR1_ORYSI	46.324	136	59	5	211	336	208	339	4.37e-21	97.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039449	tr\|G7KVB9\|G7KVB9_MEDTR	88.587	368	21	4	1	356	1	359	0.0	640

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TFs/TRs:

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Gene ID	Type	Classification
MsaG039449	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039449	MtrunA17_Chr7g0258531	88.587	368	21	4	1	356	1	359	0.0	640
MsaG039449	MtrunA17_Chr1g0175071	40.240	333	151	10	35	346	9	314	1.18e-51	174
MsaG039449	MtrunA17_Chr1g0175091	41.765	170	81	5	191	342	220	389	6.37e-26	107
MsaG039449	MtrunA17_Chr7g0258551	43.609	133	73	2	222	353	212	343	1.41e-22	97.8
MsaG039449	MtrunA17_Chr1g0190301	41.176	136	69	3	212	336	165	300	5.09e-20	90.5
MsaG039449	MtrunA17_Chr7g0261911	37.576	165	79	6	190	336	229	387	6.58e-19	87.8
MsaG039449	MtrunA17_Chr7g0274471	42.063	126	62	3	222	336	218	343	2.26e-18	85.9
MsaG039449	MtrunA17_Chr7g0254981	33.766	154	80	4	205	340	33	182	6.99e-17	79.7
MsaG039449	MtrunA17_Chr2g0291021	40.441	136	60	6	222	340	49	180	1.99e-16	79.3
MsaG039449	MtrunA17_Chr6g0461641	35.461	141	64	3	221	334	41	181	2.02e-14	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039449	AT5G06800.1	42.222	135	66	2	218	340	186	320	1.10e-21	95.5
MsaG039449	AT5G06800.2	42.857	140	63	3	218	340	186	325	3.86e-21	94.0
MsaG039449	AT3G13040.3	36.264	182	90	4	194	354	213	389	2.63e-19	89.4
MsaG039449	AT3G13040.1	36.264	182	90	4	194	354	213	389	2.63e-19	89.4
MsaG039449	AT3G13040.2	36.264	182	90	4	194	354	213	389	2.63e-19	89.4
MsaG039449	AT2G01060.1	37.037	162	80	6	210	355	3	158	1.09e-18	85.5
MsaG039449	AT3G04450.1	40.152	132	63	4	220	336	236	366	2.50e-18	86.3
MsaG039449	AT4G28610.1	40.136	147	73	5	202	336	208	351	3.46e-18	85.5
MsaG039449	AT3G04450.4	40.152	132	63	4	220	336	196	326	3.51e-18	85.5
MsaG039449	AT3G04450.2	40.152	132	63	4	220	336	196	326	3.51e-18	85.5

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Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTGACCTGTTATTT+GGG	0.315634	7:+89178560	None:intergenic
AAAGATGTATGGAACTCAAT+GGG	0.496984	7:-89180946	MsaT039449.1:CDS
AACAACCTAGTTAAGGTTGT+TGG	0.392826	7:-89180906	MsaT039449.1:CDS
AACCAACCATGTACCAACAT+TGG	0.603963	7:-89180971	None:intergenic
AAGAAGAGTAAGATGGACAG+AGG	0.623246	7:-89179520	MsaT039449.1:CDS
AAGCAGACTCCTCAACTTTA+TGG	0.179376	7:-89179594	MsaT039449.1:CDS
AATTGCAGAGGCAAAGCCTA+AGG	0.561046	7:-89179381	MsaT039449.1:intron
ACAACCTAGTTAAGGTTGTT+GGG	0.437913	7:-89180905	MsaT039449.1:CDS
ACGCATGCATAAAGCTTTGC+AGG	0.361361	7:-89179171	MsaT039449.1:CDS
ACTCAATGGGAATCCTACAT+AGG	0.576742	7:-89180933	MsaT039449.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	89178574	89180985	89178574	ID=MsaG039449
Chr7	mRNA	89178574	89180985	89178574	ID=MsaT039449.1;Parent=MsaG039449
Chr7	exon	89178574	89178693	89178574	ID=MsaT039449.1.exon7;Parent=MsaT039449.1
Chr7	CDS	89178574	89178693	89178574	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89178855	89178894	89178855	ID=MsaT039449.1.exon6;Parent=MsaT039449.1
Chr7	CDS	89178855	89178894	89178855	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89179022	89179076	89179022	ID=MsaT039449.1.exon5;Parent=MsaT039449.1
Chr7	CDS	89179022	89179076	89179022	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89179171	89179210	89179171	ID=MsaT039449.1.exon4;Parent=MsaT039449.1
Chr7	CDS	89179171	89179210	89179171	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89179319	89179395	89179319	ID=MsaT039449.1.exon3;Parent=MsaT039449.1
Chr7	CDS	89179319	89179395	89179319	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89179469	89179640	89179469	ID=MsaT039449.1.exon2;Parent=MsaT039449.1
Chr7	CDS	89179469	89179640	89179469	ID=cds.MsaT039449.1;Parent=MsaT039449.1
Chr7	exon	89180419	89180985	89180419	ID=MsaT039449.1.exon1;Parent=MsaT039449.1
Chr7	CDS	89180419	89180985	89180419	ID=cds.MsaT039449.1;Parent=MsaT039449.1

Gene Sequence

>MsaT039449.1

ATGTACCAACATTGGTCAAAGATGTATGGAACTCAATGGGAATCCTACATAGGAATTAACAACCTAGTTAAGGTTGTTGGGTCAGACCAAATTGTTGGATCAGAACACATGAGTTATGAGCCAATCAAGTCACCCTGCAACAACATTGTCACTACAAATTTTCAAGGTCAAACATCTCATGATGGTTTTGGTGCAGTGAGTGTAGCCAAAATCAAAAGTAATGTTAGTTTTCAAGGTGAAGAATATTATGATGAGGATGAGATTGAAGTTTCTGGTTGGTGTTTTGATCAGTTTCCAAAGATAACAGACCCTCCAATGCTGAATTGTCAAGCCTATGGAGGAGAGAATTTTACAACCTCTCAGTTCACAAACTCCTTGTACTCTGTTGATGAATCTTTGTTGTCTAACAGTGCAGATAGTCATAATTCTTCTGAAGAAGAATATAGTAATTTTCAGTCTGGAAATATGTCATTTTATGACCACTTTCCGAAAAAACATGATGAATTGTTTAGGAATGATGCTTCCATTGATGAGAAGCCCCTTGAAATTTCTTTTCAGAGAACTAAGTCAGGCTCATCTACAAAGTCACAAAAGCAGACTCCTCAACTTTATGGAATGTGTGCCACTTCTAACAATTCTGCTTCTAGGAAAGCTCCAACATGTAAAAGAAGAGTAAGATGGACAGAGGATCTGCATGAATCATTCATGATAATCGTTGATCACCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATACTAGATATGATGAAATCAAATTTGCTATCCATTTCTCATGTTAAAAGCCATTTGCAGAAATGTCGATCTACAATACGCATGCATAAAGCTTTGCAGGAAAGACCTGAGGAAGGACATAGAACAGATAGAGTCGCAGATCTTCAACTCAAAATCCTTAAGCAAATTGAGGAATCACGGCAGTTGCATCTAGAGACGCAAAGAAAGTTGCAAATACTAATTGAACAACATGACAAGAAGCTCAAACTAATGCAAAAAGAAAGAACCAACCAAAGAAAATTTTGGACACAACGAGAAAGGACAGTTCCCAAATAA

Protein sequence

>MsaT039449.1

MYQHWSKMYGTQWESYIGINNLVKVVGSDQIVGSEHMSYEPIKSPCNNIVTTNFQGQTSHDGFGAVSVAKIKSNVSFQGEEYYDEDEIEVSGWCFDQFPKITDPPMLNCQAYGGENFTTSQFTNSLYSVDESLLSNSADSHNSSEEEYSNFQSGNMSFYDHFPKKHDELFRNDASIDEKPLEISFQRTKSGSSTKSQKQTPQLYGMCATSNNSASRKAPTCKRRVRWTEDLHESFMIIVDHLGGPEKAKPKAILDMMKSNLLSISHVKSHLQKCRSTIRMHKALQERPEEGHRTDRVADLQLKILKQIEESRQLHLETQRKLQILIEQHDKKLKLMQKERTNQRKFWTQRERTVPK*