AlfalfaGEDB | MsaG039480

M. sativa ssp. caerulea / MsaG039480

KEGG: -
GO: -
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039480	AET00865.1	31.699	306	185	8	4	303	8	295	2.40e-32	133

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039480	sp\|Q680K8\|Y1576_ARATH	22.876	306	213	9	5	303	7	296	3.69e-16	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039480	tr\|G7K4U5\|G7K4U5_MEDTR	31.699	306	185	8	4	303	8	295	1.15e-32	133

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TFs/TRs:

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Gene ID	Type	Classification
MsaG039480	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039480	MtrunA17_Chr3g0103031	23.077	299	206	8	13	303	15	297	3.03e-18	84.0
MsaG039480	MtrunA17_Chr5g0447191	34.177	158	95	3	147	303	11	160	1.80e-16	76.3
MsaG039480	MtrunA17_Chr3g0124921	22.508	311	214	9	2	303	1	293	4.76e-16	77.8
MsaG039480	MtrunA17_Chr4g0029841	24.000	200	126	3	108	306	80	254	1.63e-15	75.5
MsaG039480	MtrunA17_Chr5g0447111	23.571	280	190	7	32	303	35	298	4.46e-15	75.1
MsaG039480	MtrunA17_Chr1g0159831	21.725	313	221	7	1	303	1	299	1.32e-14	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039480	AT1G55760.1	22.876	306	213	9	5	303	7	296	3.76e-17	81.3
MsaG039480	AT1G21780.2	20.690	319	211	8	1	303	1	293	1.17e-14	73.9
MsaG039480	AT1G21780.1	20.690	319	211	8	1	303	1	293	1.17e-14	73.9

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Find 69 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCTTCTTAAGTTCTTCA+AGG	0.396336	7:-89533799	None:intergenic
AATCTCTGCGCTGTTGTTTA+AGG	0.092327	7:+89533898	MsaT039480.1:CDS
ACAATCCTCATACTGGTGAT+GGG	0.592967	7:+89533339	MsaT039480.1:CDS
ACCATCTCCATCTTGAGATT+TGG	0.302478	7:-89532388	None:intergenic
ACTTCGATGGATTCGAAAGG+AGG	0.564300	7:+89533366	MsaT039480.1:CDS
AGAACTTAAGAAGGCTTGTA+AGG	0.421812	7:+89533805	MsaT039480.1:CDS
AGGGATACACTTGTTTCTCT+CGG	0.510766	7:+89532915	MsaT039480.1:intron
ATAGAGCTCATGGAATATGC+TGG	0.511476	7:+89533851	MsaT039480.1:CDS
ATCACCAGTATGAGGATTGT+AGG	0.489105	7:-89533336	None:intergenic
ATGATGAACGTACGGGTAGC+TGG	0.389687	7:+89532293	MsaT039480.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	89532293	89533925	89532293	ID=MsaG039480
Chr7	mRNA	89532293	89533925	89532293	ID=MsaT039480.1;Parent=MsaG039480
Chr7	exon	89532293	89532408	89532293	ID=MsaT039480.1.exon1;Parent=MsaT039480.1
Chr7	CDS	89532293	89532408	89532293	ID=cds.MsaT039480.1;Parent=MsaT039480.1
Chr7	exon	89532917	89533077	89532917	ID=MsaT039480.1.exon2;Parent=MsaT039480.1
Chr7	CDS	89532917	89533077	89532917	ID=cds.MsaT039480.1;Parent=MsaT039480.1
Chr7	exon	89533222	89533925	89533222	ID=MsaT039480.1.exon3;Parent=MsaT039480.1
Chr7	CDS	89533222	89533925	89533222	ID=cds.MsaT039480.1;Parent=MsaT039480.1

Gene Sequence

>MsaT039480.1

ATGATGAACGTACGGGTAGCTGGGTATGTTGCCCAATGTCAGTTCCGCTTTGAAGAAATCGCAAGAACTGGGTTGCAAGCAACAGAAGCAAACTTCCAAATCTCAAGATGGAGATGGGATACACTTGTTTCTCTCGGTTCATATGAGTCATCAGTAGAAATTCAGTGTGCTCCTCAAGAAGCATTGATTGGGGGTGGCATGTATTTCCCAATTGCTTCATTTTCAATCAACATTATTGACACTGCTTCAAAGGAGAAAAAACTAGTTGCTTCTACAGGTGATATTACAGAACATAGGTTTTTTCGTGGACACTCTTTCCGTTTTTCTTGGGACTTTGAAAAAGATTTCCCCTCAACGTTCTGCGTGGAAATAGAATTTGAAAACATTCGTCCCTACAATCCTCATACTGGTGATGGGTATTACTTCGATGGATTCGAAAGGAGGAAAATCACTCGATTGAGGGAAATGAGGATGAGTGGTACATTACCAGAACTCCAATTTACTTCAGGTGAAAATACAGTGAGGGTTCATAATGCTGTTGTTGAGTCAAAAGCGCCAGTGTTACACAGGTTATTTTACTATCACCTAGCTTACAATGGTACTAACACTCTTTCCATGGAGAACTCTCTTTCCAACGAGGCAAGTTCAATCACAGAAGATGTGTTGAATGCTTTCAGAGATTATCTATATGATAGCATTCTTGATGATGATCTGGCTAGACATGCCCCTGGACTACTTGAGTTAGGAAGATGCTATCTGATCGATGATTTGATTGAAACTGTTAGTAGAAGACTTGTGAGGGACCTCAACACATCTAACATTGGTACAAGACTGCTTTTAGCAATGATGTTTAACCTTGAAGAACTTAAGAAGGCTTGTAAGGAGTTGCTAGTGGATCTTAGAAAGATAGAGCTCATGGAATATGCTGGGTTGGAGCAACATATGATCGATCAAATCTCTGCGCTGTTGTTTAAGGAATGA

Protein sequence

>MsaT039480.1

MMNVRVAGYVAQCQFRFEEIARTGLQATEANFQISRWRWDTLVSLGSYESSVEIQCAPQEALIGGGMYFPIASFSINIIDTASKEKKLVASTGDITEHRFFRGHSFRFSWDFEKDFPSTFCVEIEFENIRPYNPHTGDGYYFDGFERRKITRLREMRMSGTLPELQFTSGENTVRVHNAVVESKAPVLHRLFYYHLAYNGTNTLSMENSLSNEASSITEDVLNAFRDYLYDSILDDDLARHAPGLLELGRCYLIDDLIETVSRRLVRDLNTSNIGTRLLLAMMFNLEELKKACKELLVDLRKIELMEYAGLEQHMIDQISALLFKE*