AlfalfaGEDB | MsaG039595

M. sativa ssp. caerulea / MsaG039595

KEGG: -
GO: -
PFAM: PF04844.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	XP_013449754.1	85.854	205	24	2	1	204	1	201	5.09e-109	322

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	sp\|Q9SKY9\|OFP16_ARATH	37.313	201	77	7	49	205	43	238	1.05e-26	105

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	tr\|A0A072U262\|A0A072U262_MEDTR	85.854	205	24	2	1	204	1	201	2.43e-109	322

TFs/TRs:

Gene ID	Type	Classification
MsaG039595	TF	OFP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG039595	0.810584	1.834385e-50	3.177541e-48
MsaG000528	MsaG039595	0.800151	2.755511e-48	3.738290e-46
MsaG000643	MsaG039595	0.810455	1.955699e-50	3.377144e-48
MsaG000856	MsaG039595	0.822235	4.650158e-53	1.085208e-50
MsaG001369	MsaG039595	0.807922	6.786178e-50	1.102336e-47
MsaG002681	MsaG039595	0.805910	1.798916e-49	2.785747e-47
MsaG002878	MsaG039595	0.802927	7.477473e-49	1.080499e-46
MsaG003038	MsaG039595	0.810501	1.911918e-50	3.305122e-48
MsaG003062	MsaG039595	0.815764	1.355370e-51	2.671195e-49
MsaG003418	MsaG039595	0.807501	8.330409e-50	1.339504e-47
MsaG003810	MsaG039595	0.831363	3.142008e-55	9.455869e-53
MsaG004157	MsaG039595	0.803697	5.188865e-49	7.632609e-47
MsaG004207	MsaG039595	0.804287	3.918244e-49	5.843023e-47
MsaG004277	MsaG039595	0.809190	3.649181e-50	6.110933e-48
MsaG004297	MsaG039595	0.801586	1.407720e-48	1.972746e-46
MsaG004428	MsaG039595	0.815203	1.804881e-51	3.506952e-49
MsaG004432	MsaG039595	0.811387	1.231586e-50	2.175685e-48
MsaG004849	MsaG039595	0.809381	3.322518e-50	5.589581e-48
MsaG005035	MsaG039595	0.830313	5.666728e-55	1.654722e-52
MsaG005235	MsaG039595	0.804833	3.017618e-49	4.557286e-47
MsaG006145	MsaG039595	0.807906	6.838264e-50	1.110361e-47
MsaG006412	MsaG039595	0.810846	1.611445e-50	2.809262e-48
MsaG006521	MsaG039595	0.802592	8.760337e-49	1.256219e-46
MsaG006548	MsaG039595	0.808714	4.608260e-50	7.629622e-48
MsaG006611	MsaG039595	0.809088	3.835157e-50	6.406980e-48
MsaG007096	MsaG039595	0.803984	4.526439e-49	6.702556e-47
MsaG007601	MsaG039595	0.821180	8.132999e-53	1.845530e-50
MsaG008256	MsaG039595	0.802698	8.332328e-49	1.197709e-46
MsaG008430	MsaG039595	0.831368	3.132759e-55	9.429534e-53
MsaG008682	MsaG039595	0.800267	2.610035e-48	3.550231e-46
MsaG009178	MsaG039595	0.804404	3.704244e-49	5.538828e-47
MsaG009193	MsaG039595	0.805539	2.150794e-49	3.301736e-47
MsaG009472	MsaG039595	0.800972	1.877826e-48	2.595194e-46
MsaG009672	MsaG039595	0.815822	1.315813e-51	2.597100e-49
MsaG009739	MsaG039595	0.814091	3.171699e-51	5.992671e-49
MsaG009765	MsaG039595	0.823872	1.939141e-53	4.730146e-51
MsaG009926	MsaG039595	0.814538	2.529527e-51	4.833148e-49
MsaG011339	MsaG039595	0.801861	1.237192e-48	1.744685e-46
MsaG011559	MsaG039595	0.805127	2.620824e-49	3.985137e-47
MsaG011639	MsaG039595	0.804111	4.261045e-49	6.328379e-47
MsaG011940	MsaG039595	0.800159	2.744612e-48	3.724175e-46
MsaG013148	MsaG039595	0.802020	1.147696e-48	1.624296e-46
MsaG013189	MsaG039595	0.822644	3.739985e-53	8.824738e-51
MsaG013310	MsaG039595	0.812948	5.644514e-51	1.036354e-48
MsaG013390	MsaG039595	0.815782	1.343351e-51	2.648649e-49
MsaG014039	MsaG039595	0.807107	1.008388e-49	1.606334e-47
MsaG014490	MsaG039595	0.811917	9.458974e-51	1.692909e-48
MsaG014491	MsaG039595	0.829638	8.262342e-55	2.366621e-52
MsaG014493	MsaG039595	0.824991	1.060549e-53	2.667166e-51
MsaG014492	MsaG039595	0.825796	6.852905e-54	1.762205e-51
MsaG015063	MsaG039595	0.802021	1.146989e-48	1.623347e-46
MsaG015166	MsaG039595	0.832329	1.819286e-55	5.631556e-53
MsaG016121	MsaG039595	0.802873	7.672468e-49	1.107270e-46
MsaG016180	MsaG039595	0.818988	2.568584e-52	5.500707e-50
MsaG017192	MsaG039595	0.803498	5.702825e-49	8.349965e-47
MsaG017931	MsaG039595	0.802438	9.422154e-49	1.346352e-46
MsaG018011	MsaG039595	0.822205	4.724728e-53	1.101731e-50
MsaG018256	MsaG039595	0.807496	8.350973e-50	1.342652e-47
MsaG018484	MsaG039595	0.810782	1.663447e-50	2.895365e-48
MsaG018502	MsaG039595	0.802978	7.300770e-49	1.056195e-46
MsaG018903	MsaG039595	0.800782	2.052006e-48	2.823951e-46
MsaG019130	MsaG039595	0.825868	6.591092e-54	1.698313e-51
MsaG019620	MsaG039595	0.806707	1.224031e-49	1.931605e-47
MsaG021483	MsaG039595	0.811413	1.215960e-50	2.149421e-48
MsaG021484	MsaG039595	0.827637	2.503234e-54	6.776098e-52
MsaG021557	MsaG039595	0.803740	5.083478e-49	7.485138e-47
MsaG022548	MsaG039595	0.803569	5.514718e-49	8.087758e-47
MsaG022609	MsaG039595	0.830133	6.268393e-55	1.821033e-52
MsaG023249	MsaG039595	0.820711	1.041816e-52	2.334693e-50
MsaG024918	MsaG039595	0.807980	6.597867e-50	1.073201e-47
MsaG025119	MsaG039595	0.814244	2.935777e-51	5.568278e-49
MsaG025489	MsaG039595	0.805301	2.410928e-49	3.680724e-47
MsaG026620	MsaG039595	0.803562	5.531875e-49	8.111798e-47
MsaG026672	MsaG039595	0.801964	1.178485e-48	1.665781e-46
MsaG026937	MsaG039595	0.843688	2.243511e-58	9.848852e-56
MsaG027688	MsaG039595	0.807128	9.983878e-50	1.591196e-47
MsaG027991	MsaG039595	0.806224	1.546368e-49	2.412593e-47
MsaG028072	MsaG039595	0.801683	1.345099e-48	1.889181e-46
MsaG028204	MsaG039595	0.803483	5.745479e-49	8.409472e-47
MsaG028306	MsaG039595	0.824108	1.707368e-53	4.191681e-51
MsaG028370	MsaG039595	0.809522	3.099632e-50	5.232705e-48
MsaG028601	MsaG039595	0.800986	1.865093e-48	2.578477e-46
MsaG028645	MsaG039595	0.802083	1.114265e-48	1.579280e-46
MsaG029311	MsaG039595	0.803404	5.963526e-49	8.712771e-47
MsaG029341	MsaG039595	0.810065	2.370901e-50	4.055280e-48
MsaG029932	MsaG039595	0.812586	6.768885e-51	1.231674e-48
MsaG030106	MsaG039595	0.803836	4.857968e-49	7.168721e-47
MsaG030605	MsaG039595	0.809616	2.959316e-50	5.007075e-48
MsaG030781	MsaG039595	0.812731	6.293968e-51	1.149352e-48
MsaG031021	MsaG039595	0.805701	1.989495e-49	3.065821e-47
MsaG032340	MsaG039595	0.800630	2.203219e-48	3.021672e-46
MsaG032634	MsaG039595	0.811773	1.016348e-50	1.812493e-48
MsaG032860	MsaG039595	0.829017	1.167439e-54	3.284934e-52
MsaG034107	MsaG039595	0.800494	2.348082e-48	3.210311e-46
MsaG034231	MsaG039595	0.809669	2.882238e-50	4.882853e-48
MsaG034737	MsaG039595	0.800318	2.548738e-48	3.470834e-46
MsaG035494	MsaG039595	0.819949	1.554730e-52	3.414786e-50
MsaG035731	MsaG039595	0.800345	2.517015e-48	3.429768e-46
MsaG036289	MsaG039595	0.803976	4.543430e-49	6.726507e-47
MsaG036421	MsaG039595	0.823104	2.925457e-53	6.989107e-51
MsaG038978	MsaG039595	0.826794	3.974566e-54	1.050774e-51
MsaG038991	MsaG039595	0.800491	2.350909e-48	3.213995e-46
MsaG039397	MsaG039595	0.804833	3.017618e-49	4.557286e-47
MsaG039595	MsaG040572	0.827988	2.063226e-54	5.640303e-52
MsaG039595	MsaG040950	0.841604	7.972477e-58	3.273752e-55
MsaG039595	MsaG041320	0.811878	9.641104e-51	1.723850e-48
MsaG039595	MsaG041358	0.807945	6.708784e-50	1.090345e-47
MsaG039595	MsaG041495	0.824073	1.740260e-53	4.268293e-51
MsaG039595	MsaG042574	0.800691	2.141032e-48	2.940474e-46
MsaG039595	MsaG042575	0.809702	2.836216e-50	4.808725e-48
MsaG039595	MsaG043390	0.805832	1.868171e-49	2.887714e-47
MsaG039595	MsaG043815	0.803064	7.006776e-49	1.015689e-46
MsaG039595	MsaG044311	0.801923	1.201249e-48	1.696403e-46
MsaG039595	MsaG044313	0.808806	4.405305e-50	7.309548e-48
MsaG039595	MsaG044632	0.802170	1.069394e-48	1.518681e-46
MsaG039595	MsaG044874	0.805521	2.169797e-49	3.329493e-47
MsaG039595	MsaG045667	0.823909	1.900109e-53	4.639703e-51
MsaG039595	MsaG045672	0.810285	2.127162e-50	3.657922e-48
MsaG039595	MsaG045758	0.814359	2.769441e-51	5.268050e-49
MsaG039595	MsaG046196	0.802718	8.256317e-49	1.187301e-46
MsaG039595	MsaG047030	0.808842	4.327935e-50	7.187541e-48
MsaG039595	MsaG008830	0.809037	3.933694e-50	6.563401e-48
MsaG039595	MsaG008719	0.805251	2.469375e-49	3.765607e-47
MsaG039595	MsaG013410	0.806909	1.110276e-49	1.760354e-47
MsaG039595	MsaG016720	0.807970	6.628036e-50	1.077852e-47
MsaG039595	MsaG014384	0.801814	1.264809e-48	1.781718e-46
MsaG039595	MsaG013377	0.805973	1.745343e-49	2.706767e-47
MsaG039595	MsaG013434	0.802851	7.750731e-49	1.118000e-46
MsaG039595	MsaG019389	0.818346	3.586281e-52	7.552488e-50
MsaG039595	MsaG018691	0.823545	2.310858e-53	5.587211e-51
MsaG039595	MsaG023053	0.808024	6.457393e-50	1.051467e-47
MsaG039595	MsaG026813	0.801900	1.214565e-48	1.714322e-46
MsaG039595	MsaG030428	0.827671	2.456125e-54	6.654859e-52
MsaG039595	MsaG033056	0.801130	1.743718e-48	2.418497e-46
MsaG039595	MsaG032395	0.804352	3.798014e-49	5.672281e-47
MsaG039595	MsaG037392	0.817064	6.958909e-52	1.417921e-49
MsaG039595	MsaG036708	0.800287	2.586275e-48	3.519425e-46
MsaG039595	MsaG036228	0.812371	7.535733e-51	1.363896e-48
MsaG039595	MsaG036499	0.810032	2.411011e-50	4.120450e-48
MsaG039595	MsaG043535	0.803408	5.954161e-49	8.699753e-47
MsaG039595	MsaG043148	0.816987	7.238580e-52	1.471979e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	MtrunA17_Chr7g0259991	85.854	205	24	2	1	204	1	201	4.68e-113	322
MsaG039595	MtrunA17_Chr1g0185481	50.427	234	75	7	12	206	38	269	5.68e-62	194
MsaG039595	MtrunA17_Chr1g0205341	47.287	129	53	3	75	203	66	179	7.61e-32	115
MsaG039595	MtrunA17_Chr2g0331871	34.532	139	75	2	88	210	142	280	2.50e-18	81.6
MsaG039595	MtrunA17_Chr7g0267101	35.065	154	80	5	50	203	66	199	7.79e-18	79.7
MsaG039595	MtrunA17_Chr4g0004341	49.275	69	33	1	132	200	183	249	1.15e-14	71.2
MsaG039595	MtrunA17_Chr1g0210351	48.529	68	29	2	134	201	138	199	1.18e-13	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	AT2G32100.1	37.313	201	77	7	49	205	43	238	1.07e-27	105
MsaG039595	AT1G05420.1	43.077	130	56	4	78	205	107	220	5.33e-25	98.2
MsaG039595	AT1G05420.2	43.077	130	56	4	78	205	123	236	6.86e-25	98.2
MsaG039595	AT4G14860.1	50.000	78	36	2	130	205	96	172	8.62e-20	83.6
MsaG039595	AT5G04820.1	34.302	172	100	6	36	203	50	212	1.92e-18	81.6
MsaG039595	AT1G79960.1	42.105	114	49	4	90	203	164	260	2.62e-17	79.0
MsaG039595	AT2G36050.1	32.231	121	58	2	83	203	77	173	2.50e-14	70.1

Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAGGTTCGGGTTTGGAATC+TGG	0.244871	7:+90752292	None:intergenic
ATGTCGGCGGGTTGAGGTTC+GGG	0.249268	7:+90752280	None:intergenic
AATAAACTTGTGAGTGTTCT+TGG	0.269260	7:+90751937	None:intergenic
AATGTCGGCGGGTTGAGGTT+CGG	0.312904	7:+90752279	None:intergenic
CTTCTTGTTCTAAGTGTAGT+TGG	0.316838	7:+90752487	None:intergenic
ATGGAGGATTGTTATCAATT+TGG	0.317862	7:+90752380	None:intergenic
GGCGGGTTGAGGTTCGGGTT+TGG	0.367644	7:+90752285	None:intergenic
TGTTATCAATTTGGTGATGT+TGG	0.380578	7:+90752389	None:intergenic
AGAAGATGAGGAGGAGGATG+AGG	0.400469	7:+90752186	None:intergenic
TGAAAGACGTGAAGTCCAAC+TGG	0.409296	7:-90752003	MsaT039595.1:CDS
TTAGAATCATTTGTCGGTGC+TGG	0.428480	7:+90752139	None:intergenic
CTCATCTTCTTCCTCCTCGT+TGG	0.428907	7:-90752173	MsaT039595.1:CDS
GACTGCCGAAAATCCATGTA+AGG	0.436850	7:+90752061	None:intergenic
ATAAACTTGTGAGTGTTCTT+GGG	0.441701	7:+90751938	None:intergenic
GTGGCAATGTCGGCGGGTTG+AGG	0.442171	7:+90752274	None:intergenic
ATAGGTAATTGAGGTGTTTG+AGG	0.446472	7:+90752455	None:intergenic
ATACTCACCGGACCCTTACA+TGG	0.446488	7:-90752074	MsaT039595.1:CDS
GGATGAGGTGGATTCAACTA+TGG	0.452726	7:+90752201	None:intergenic
GGAGGAAGAAGATGAGGAGG+AGG	0.465223	7:+90752180	None:intergenic
TGTTCTAAGTGTAGTTGGCA+TGG	0.478635	7:+90752492	None:intergenic
TGTTGAAGAGGAGGAGATTG+AGG	0.483301	7:+90752412	None:intergenic
TTCACGTCTTTCATCAACTC+TGG	0.488171	7:+90752013	None:intergenic
AGATGAGGAGGAGGATGAGG+TGG	0.490399	7:+90752189	None:intergenic
GGGTTTGGAATCTGGTTCGA+TGG	0.501378	7:+90752300	None:intergenic
TTTGATCATGGTTGATGACT+TGG	0.504706	7:+90752351	None:intergenic
TTGAGAAACATAGGTAATTG+AGG	0.507591	7:+90752446	None:intergenic
GCTAAGAAGAAGCTCGTGTA+AGG	0.508873	7:+90751976	None:intergenic
CGAAAATCCATGTAAGGGTC+CGG	0.511393	7:+90752067	None:intergenic
GGCGATAGCGGTGGCAATGT+CGG	0.513648	7:+90752264	None:intergenic
ATAGCGGTGGCAATGTCGGC+GGG	0.519957	7:+90752268	None:intergenic
TGGAATCTGGTTCGATGGAG+TGG	0.523377	7:+90752305	None:intergenic
GGTGGATTCAACTATGGAGT+TGG	0.526250	7:+90752207	None:intergenic
GTATGAAAGTTGAGAAACAT+AGG	0.539754	7:+90752437	None:intergenic
CGAGGAGGAAGAAGATGAGG+AGG	0.566205	7:+90752177	None:intergenic
CTCGTGTAAGGTATCCCAGT+TGG	0.568383	7:+90751988	None:intergenic
GGCGGTGCCAACATACTCAC+CGG	0.568623	7:-90752086	MsaT039595.1:CDS
ATCATTTGTCGGTGCTGGCA+CGG	0.571546	7:+90752144	None:intergenic
TGGTGATGTTGGTGTTGAAG+AGG	0.571921	7:+90752400	None:intergenic
CTGGTTCGATGGAGTGGTGG+TGG	0.576085	7:+90752311	None:intergenic
GATAGCGGTGGCAATGTCGG+CGG	0.576430	7:+90752267	None:intergenic
GATGACTTGGAGAGTGATGG+AGG	0.578578	7:+90752364	None:intergenic
CAACGAGGAGGAAGAAGATG+AGG	0.579217	7:+90752174	None:intergenic
ATACACTATCACGAAGAAGA+TGG	0.579944	7:+90751854	None:intergenic
TCGGCAGTCAATGCAAGAGA+TGG	0.582966	7:-90752047	MsaT039595.1:CDS
GCAGTCAATGCAAGAGATGG+TGG	0.593765	7:-90752044	MsaT039595.1:CDS
GAAGCGGTTGGAGGCGATAG+CGG	0.600134	7:+90752252	None:intergenic
TAAGGGTCCGGTGAGTATGT+TGG	0.613914	7:+90752079	None:intergenic
GTTGATGACTTGGAGAGTGA+TGG	0.615673	7:+90752361	None:intergenic
TGATGTTGGTGTTGAAGAGG+AGG	0.624026	7:+90752403	None:intergenic
GCGGTTGGAGGCGATAGCGG+TGG	0.625107	7:+90752255	None:intergenic
AATCTGGTTCGATGGAGTGG+TGG	0.632867	7:+90752308	None:intergenic
ACTGCCGAAAATCCATGTAA+GGG	0.646543	7:+90752062	None:intergenic
ACTATGGAGTTGGAACGCCC+CGG	0.655856	7:+90752217	None:intergenic
GGAGTTGGAACGCCCCGGAG+AGG	0.679932	7:+90752222	None:intergenic
GAAAGACGTGAAGTCCAACT+GGG	0.680650	7:-90752002	MsaT039595.1:CDS
CACGGTGGAAACCAACGAGG+AGG	0.688972	7:+90752162	None:intergenic
ATTTGTCGGTGCTGGCACGG+TGG	0.715454	7:+90752147	None:intergenic
TGGCACGGTGGAAACCAACG+AGG	0.765920	7:+90752159	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	90751862	90752512	90751862	ID=MsaG039595
Chr7	mRNA	90751862	90752512	90751862	ID=MsaT039595.1;Parent=MsaG039595
Chr7	exon	90751862	90752512	90751862	ID=MsaT039595.1.exon1;Parent=MsaT039595.1
Chr7	CDS	90751862	90752512	90751862	ID=cds.MsaT039595.1;Parent=MsaT039595.1

Gene Sequence

>MsaT039595.1

ATGCCAACTACACTTAGAACAAGAAGAAGAAACAACCTCAAACACCTCAATTACCTATGTTTCTCAACTTTCATACAACCTCAATCTCCTCCTCTTCAACACCAACATCACCAAATTGATAACAATCCTCCATCACTCTCCAAGTCATCAACCATGATCAAAAACTTCAACACTCTCTACCACCACCACTCCATCGAACCAGATTCCAAACCCGAACCTCAACCCGCCGACATTGCCACCGCTATCGCCTCCAACCGCTTCTTTTTCTCCTCTCCGGGGCGTTCCAACTCCATAGTTGAATCCACCTCATCCTCCTCCTCATCTTCTTCCTCCTCGTTGGTTTCCACCGTGCCAGCACCGACAAATGATTCTAACAAAAAGAAGACAGTTTTGAACGGAAGTGTGGCGGTGCCAACATACTCACCGGACCCTTACATGGATTTTCGGCAGTCAATGCAAGAGATGGTGGAAGCGCAACCAGAGTTGATGAAAGACGTGAAGTCCAACTGGGATACCTTACACGAGCTTCTTCTTAGCTATCTCGCGATTAATCCCAAGAACACTCACAAGTTTATTCTCGATGCTTTTTCTGATCTTATTGTTACTCTCATGTCATTTTCTTCTTCTTCTTCTTCACCATCTTCTTCGTGA

Protein sequence

>MsaT039595.1

MPTTLRTRRRNNLKHLNYLCFSTFIQPQSPPLQHQHHQIDNNPPSLSKSSTMIKNFNTLYHHHSIEPDSKPEPQPADIATAIASNRFFFSSPGRSNSIVESTSSSSSSSSSSLVSTVPAPTNDSNKKKTVLNGSVAVPTYSPDPYMDFRQSMQEMVEAQPELMKDVKSNWDTLHELLLSYLAINPKNTHKFILDAFSDLIVTLMSFSSSSSSPSSS*