AlfalfaGEDB | MsaG039595

M. sativa ssp. caerulea / MsaG039595

KEGG: -
GO: -
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	XP_013449754.1	85.854	205	24	2	1	204	1	201	5.09e-109	322

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	sp\|Q9SKY9\|OFP16_ARATH	37.313	201	77	7	49	205	43	238	1.05e-26	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	tr\|A0A072U262\|A0A072U262_MEDTR	85.854	205	24	2	1	204	1	201	2.43e-109	322

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TFs/TRs:

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Gene ID	Type	Classification
MsaG039595	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG039595	0.810584	1.834385e-50	3.177541e-48
MsaG000528	MsaG039595	0.800151	2.755511e-48	3.738290e-46
MsaG000643	MsaG039595	0.810455	1.955699e-50	3.377144e-48
MsaG000856	MsaG039595	0.822235	4.650158e-53	1.085208e-50
MsaG001369	MsaG039595	0.807922	6.786178e-50	1.102336e-47
MsaG002681	MsaG039595	0.805910	1.798916e-49	2.785747e-47
MsaG002878	MsaG039595	0.802927	7.477473e-49	1.080499e-46
MsaG003038	MsaG039595	0.810501	1.911918e-50	3.305122e-48
MsaG003062	MsaG039595	0.815764	1.355370e-51	2.671195e-49
MsaG003418	MsaG039595	0.807501	8.330409e-50	1.339504e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	MtrunA17_Chr7g0259991	85.854	205	24	2	1	204	1	201	4.68e-113	322
MsaG039595	MtrunA17_Chr1g0185481	50.427	234	75	7	12	206	38	269	5.68e-62	194
MsaG039595	MtrunA17_Chr1g0205341	47.287	129	53	3	75	203	66	179	7.61e-32	115
MsaG039595	MtrunA17_Chr2g0331871	34.532	139	75	2	88	210	142	280	2.50e-18	81.6
MsaG039595	MtrunA17_Chr7g0267101	35.065	154	80	5	50	203	66	199	7.79e-18	79.7
MsaG039595	MtrunA17_Chr4g0004341	49.275	69	33	1	132	200	183	249	1.15e-14	71.2
MsaG039595	MtrunA17_Chr1g0210351	48.529	68	29	2	134	201	138	199	1.18e-13	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039595	AT2G32100.1	37.313	201	77	7	49	205	43	238	1.07e-27	105
MsaG039595	AT1G05420.1	43.077	130	56	4	78	205	107	220	5.33e-25	98.2
MsaG039595	AT1G05420.2	43.077	130	56	4	78	205	123	236	6.86e-25	98.2
MsaG039595	AT4G14860.1	50.000	78	36	2	130	205	96	172	8.62e-20	83.6
MsaG039595	AT5G04820.1	34.302	172	100	6	36	203	50	212	1.92e-18	81.6
MsaG039595	AT1G79960.1	42.105	114	49	4	90	203	164	260	2.62e-17	79.0
MsaG039595	AT2G36050.1	32.231	121	58	2	83	203	77	173	2.50e-14	70.1

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAAACTTGTGAGTGTTCT+TGG	0.269260	7:+90751937	None:intergenic
AATCTGGTTCGATGGAGTGG+TGG	0.632867	7:+90752308	None:intergenic
AATGTCGGCGGGTTGAGGTT+CGG	0.312904	7:+90752279	None:intergenic
ACTATGGAGTTGGAACGCCC+CGG	0.655856	7:+90752217	None:intergenic
ACTGCCGAAAATCCATGTAA+GGG	0.646543	7:+90752062	None:intergenic
AGAAGATGAGGAGGAGGATG+AGG	0.400469	7:+90752186	None:intergenic
AGATGAGGAGGAGGATGAGG+TGG	0.490399	7:+90752189	None:intergenic
ATAAACTTGTGAGTGTTCTT+GGG	0.441701	7:+90751938	None:intergenic
ATACACTATCACGAAGAAGA+TGG	0.579944	7:+90751854	None:intergenic
ATACTCACCGGACCCTTACA+TGG	0.446488	7:-90752074	MsaT039595.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	90751862	90752512	90751862	ID=MsaG039595
Chr7	mRNA	90751862	90752512	90751862	ID=MsaT039595.1;Parent=MsaG039595
Chr7	exon	90751862	90752512	90751862	ID=MsaT039595.1.exon1;Parent=MsaT039595.1
Chr7	CDS	90751862	90752512	90751862	ID=cds.MsaT039595.1;Parent=MsaT039595.1

Gene Sequence

>MsaT039595.1

ATGCCAACTACACTTAGAACAAGAAGAAGAAACAACCTCAAACACCTCAATTACCTATGTTTCTCAACTTTCATACAACCTCAATCTCCTCCTCTTCAACACCAACATCACCAAATTGATAACAATCCTCCATCACTCTCCAAGTCATCAACCATGATCAAAAACTTCAACACTCTCTACCACCACCACTCCATCGAACCAGATTCCAAACCCGAACCTCAACCCGCCGACATTGCCACCGCTATCGCCTCCAACCGCTTCTTTTTCTCCTCTCCGGGGCGTTCCAACTCCATAGTTGAATCCACCTCATCCTCCTCCTCATCTTCTTCCTCCTCGTTGGTTTCCACCGTGCCAGCACCGACAAATGATTCTAACAAAAAGAAGACAGTTTTGAACGGAAGTGTGGCGGTGCCAACATACTCACCGGACCCTTACATGGATTTTCGGCAGTCAATGCAAGAGATGGTGGAAGCGCAACCAGAGTTGATGAAAGACGTGAAGTCCAACTGGGATACCTTACACGAGCTTCTTCTTAGCTATCTCGCGATTAATCCCAAGAACACTCACAAGTTTATTCTCGATGCTTTTTCTGATCTTATTGTTACTCTCATGTCATTTTCTTCTTCTTCTTCTTCACCATCTTCTTCGTGA

Protein sequence

>MsaT039595.1

MPTTLRTRRRNNLKHLNYLCFSTFIQPQSPPLQHQHHQIDNNPPSLSKSSTMIKNFNTLYHHHSIEPDSKPEPQPADIATAIASNRFFFSSPGRSNSIVESTSSSSSSSSSSLVSTVPAPTNDSNKKKTVLNGSVAVPTYSPDPYMDFRQSMQEMVEAQPELMKDVKSNWDTLHELLLSYLAINPKNTHKFILDAFSDLIVTLMSFSSSSSSPSSS*