Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039622 | KEH23827.1 | 96.894 | 322 | 8 | 1 | 1 | 320 | 1 | 322 | 0.0 | 643 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039622 | sp|Q9LUH8|HFA6B_ARATH | 54.722 | 360 | 119 | 7 | 22 | 338 | 34 | 392 | 3.82e-121 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039622 | tr|A0A072U293|A0A072U293_MEDTR | 96.894 | 322 | 8 | 1 | 1 | 320 | 1 | 322 | 0.0 | 643 |
Gene ID | Type | Classification |
---|---|---|
MsaG039622 | TF | HSF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004319 | MsaG039622 | 0.816065 | 1.162123e-51 | 2.307904e-49 |
MsaG005000 | MsaG039622 | 0.803900 | 4.710135e-49 | 6.960993e-47 |
MsaG005838 | MsaG039622 | 0.814078 | 3.193866e-51 | 6.032480e-49 |
MsaG006175 | MsaG039622 | 0.804644 | 3.303269e-49 | 4.966659e-47 |
MsaG007716 | MsaG039622 | 0.815133 | 1.869960e-51 | 3.626833e-49 |
MsaG008461 | MsaG039622 | 0.819722 | 1.751058e-52 | 3.822722e-50 |
MsaG008426 | MsaG039622 | 0.817925 | 4.461100e-52 | 9.293457e-50 |
MsaG010521 | MsaG039622 | 0.811161 | 1.378284e-50 | 2.421383e-48 |
MsaG011806 | MsaG039622 | 0.814259 | 2.914574e-51 | 5.530012e-49 |
MsaG020843 | MsaG039622 | 0.827316 | 2.985576e-54 | 8.009318e-52 |
MsaG021590 | MsaG039622 | 0.809854 | 2.631247e-50 | 4.477660e-48 |
MsaG022628 | MsaG039622 | 0.818534 | 3.252784e-52 | 6.883676e-50 |
MsaG028715 | MsaG039622 | 0.801602 | 1.397056e-48 | 1.958562e-46 |
MsaG028811 | MsaG039622 | 0.863258 | 5.621614e-64 | 4.956334e-61 |
MsaG029184 | MsaG039622 | 0.800081 | 2.846034e-48 | 3.855076e-46 |
MsaG029581 | MsaG039622 | 0.809820 | 2.676596e-50 | 4.551095e-48 |
MsaG031277 | MsaG039622 | 0.800899 | 1.943262e-48 | 2.681200e-46 |
MsaG039621 | MsaG039622 | 0.857609 | 2.830332e-62 | 2.011327e-59 |
MsaG039622 | MsaG039671 | 0.806086 | 1.652311e-49 | 2.569435e-47 |
MsaG039622 | MsaG040072 | 0.806628 | 1.271710e-49 | 2.003151e-47 |
MsaG039622 | MsaG041687 | 0.809330 | 3.406133e-50 | 5.723065e-48 |
MsaG039622 | MsaG043415 | 0.819197 | 2.302932e-52 | 4.959101e-50 |
MsaG039622 | MsaG044384 | 0.809588 | 3.000049e-50 | 5.072662e-48 |
MsaG039622 | MsaG046053 | 0.804462 | 3.603797e-49 | 5.395690e-47 |
MsaG039622 | MsaG046383 | 0.856009 | 8.332418e-62 | 5.583426e-59 |
MsaG039622 | MsaG033467 | 0.824636 | 1.284627e-53 | 3.199467e-51 |
MsaG039622 | MsaG032243 | 0.816195 | 1.087274e-51 | 2.166491e-49 |
MsaG039622 | MsaG037271 | 0.801665 | 1.356582e-48 | 1.904523e-46 |
MsaG039622 | MsaG035272 | 0.803807 | 4.925694e-49 | 7.263770e-47 |
MsaG039622 | MsaG043831 | 0.800587 | 2.247570e-48 | 3.079466e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039622 | MtrunA17_Chr7g0260331 | 96.894 | 322 | 8 | 1 | 1 | 320 | 1 | 322 | 0.0 | 643 |
MsaG039622 | MtrunA17_Chr1g0185131 | 57.396 | 338 | 100 | 7 | 1 | 325 | 1 | 307 | 4.82e-109 | 325 |
MsaG039622 | MtrunA17_Chr1g0204741 | 56.711 | 298 | 115 | 5 | 26 | 321 | 17 | 302 | 1.26e-106 | 318 |
MsaG039622 | MtrunA17_Chr3g0135831 | 63.761 | 218 | 73 | 2 | 34 | 251 | 31 | 242 | 3.76e-95 | 290 |
MsaG039622 | MtrunA17_Chr5g0410881 | 58.559 | 222 | 86 | 1 | 35 | 250 | 18 | 239 | 1.91e-87 | 275 |
MsaG039622 | MtrunA17_Chr4g0039891 | 57.005 | 207 | 84 | 1 | 48 | 249 | 11 | 217 | 6.87e-77 | 247 |
MsaG039622 | MtrunA17_Chr4g0071051 | 45.172 | 290 | 130 | 5 | 7 | 289 | 67 | 334 | 3.48e-73 | 235 |
MsaG039622 | MtrunA17_Chr7g0260361 | 96.040 | 101 | 4 | 0 | 321 | 421 | 59 | 159 | 1.52e-62 | 199 |
MsaG039622 | MtrunA17_Chr8g0379701 | 41.667 | 228 | 121 | 3 | 48 | 275 | 11 | 226 | 1.12e-52 | 181 |
MsaG039622 | MtrunA17_Chr8g0392001 | 47.087 | 206 | 95 | 3 | 49 | 244 | 22 | 223 | 1.52e-52 | 180 |
MsaG039622 | MtrunA17_Chr6g0485571 | 43.415 | 205 | 107 | 3 | 49 | 253 | 11 | 206 | 6.37e-52 | 177 |
MsaG039622 | MtrunA17_Chr1g0204631 | 77.228 | 101 | 23 | 0 | 321 | 421 | 113 | 213 | 1.29e-49 | 167 |
MsaG039622 | MtrunA17_Chr6g0467041 | 44.878 | 205 | 99 | 5 | 49 | 250 | 22 | 215 | 4.97e-49 | 169 |
MsaG039622 | MtrunA17_Chr8g0378061 | 47.059 | 204 | 98 | 6 | 50 | 252 | 23 | 217 | 8.93e-49 | 172 |
MsaG039622 | MtrunA17_Chr2g0284481 | 36.800 | 250 | 131 | 5 | 48 | 284 | 14 | 249 | 4.31e-46 | 163 |
MsaG039622 | MtrunA17_Chr2g0330821 | 43.386 | 189 | 102 | 2 | 43 | 231 | 73 | 256 | 2.49e-45 | 160 |
MsaG039622 | MtrunA17_Chr5g0402291 | 66.667 | 102 | 34 | 0 | 46 | 147 | 6 | 107 | 4.47e-44 | 155 |
MsaG039622 | MtrunA17_Chr3g0134031 | 68.932 | 103 | 31 | 1 | 43 | 145 | 18 | 119 | 1.75e-43 | 156 |
MsaG039622 | MtrunA17_Chr5g0397881 | 65.957 | 94 | 32 | 0 | 47 | 140 | 22 | 115 | 6.81e-42 | 151 |
MsaG039622 | MtrunA17_Chr1g0203601 | 61.702 | 94 | 36 | 0 | 47 | 140 | 16 | 109 | 5.42e-40 | 144 |
MsaG039622 | MtrunA17_Chr5g0441531 | 65.957 | 94 | 32 | 0 | 47 | 140 | 23 | 116 | 1.92e-39 | 142 |
MsaG039622 | MtrunA17_Chr7g0257331 | 45.062 | 162 | 77 | 3 | 40 | 189 | 9 | 170 | 2.90e-39 | 140 |
MsaG039622 | MtrunA17_Chr6g0472421 | 60.638 | 94 | 37 | 0 | 47 | 140 | 31 | 124 | 1.94e-38 | 141 |
MsaG039622 | MtrunA17_Chr8g0375041 | 43.605 | 172 | 78 | 3 | 44 | 199 | 4 | 172 | 1.92e-37 | 136 |
MsaG039622 | MtrunA17_Chr4g0047421 | 38.462 | 182 | 97 | 5 | 47 | 224 | 31 | 201 | 1.53e-32 | 122 |
MsaG039622 | MtrunA17_Chr1g0179321 | 66.216 | 74 | 25 | 0 | 35 | 108 | 35 | 108 | 1.79e-30 | 113 |
MsaG039622 | MtrunA17_Chr1g0179311 | 44.578 | 166 | 85 | 5 | 106 | 270 | 11 | 170 | 1.01e-29 | 118 |
MsaG039622 | MtrunA17_Chr4g0023771 | 57.143 | 70 | 29 | 1 | 40 | 108 | 6 | 75 | 3.57e-21 | 88.2 |
MsaG039622 | MtrunA17_Chr2g0330841 | 32.544 | 169 | 103 | 5 | 109 | 273 | 41 | 202 | 1.20e-18 | 87.4 |
MsaG039622 | MtrunA17_Chr5g0448141 | 39.604 | 101 | 61 | 0 | 321 | 421 | 114 | 214 | 3.60e-15 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039622 | AT3G22830.1 | 54.722 | 360 | 119 | 7 | 22 | 338 | 34 | 392 | 3.88e-122 | 360 |
MsaG039622 | AT3G51910.1 | 54.514 | 288 | 92 | 6 | 39 | 325 | 19 | 268 | 2.65e-96 | 290 |
MsaG039622 | AT2G26150.1 | 61.111 | 216 | 82 | 2 | 36 | 250 | 31 | 245 | 3.02e-90 | 277 |
MsaG039622 | AT2G26150.4 | 61.111 | 216 | 82 | 2 | 36 | 250 | 31 | 245 | 3.02e-90 | 277 |
MsaG039622 | AT3G63350.1 | 47.297 | 296 | 119 | 4 | 27 | 320 | 6 | 266 | 1.63e-83 | 257 |
MsaG039622 | AT1G32330.1 | 58.333 | 228 | 80 | 4 | 36 | 250 | 24 | 249 | 4.47e-82 | 260 |
MsaG039622 | AT1G32330.2 | 58.333 | 228 | 80 | 4 | 36 | 250 | 24 | 249 | 4.50e-82 | 260 |
MsaG039622 | AT4G17750.1 | 48.551 | 276 | 115 | 5 | 26 | 280 | 23 | 292 | 5.89e-82 | 260 |
MsaG039622 | AT5G16820.1 | 51.538 | 260 | 110 | 5 | 27 | 276 | 10 | 263 | 3.42e-79 | 253 |
MsaG039622 | AT5G16820.2 | 51.538 | 260 | 110 | 5 | 27 | 276 | 10 | 263 | 3.42e-79 | 253 |
MsaG039622 | AT3G02990.1 | 53.913 | 230 | 99 | 3 | 48 | 270 | 22 | 251 | 1.92e-77 | 248 |
MsaG039622 | AT5G43840.1 | 45.652 | 276 | 118 | 6 | 35 | 297 | 5 | 261 | 6.97e-74 | 233 |
MsaG039622 | AT5G03720.2 | 46.296 | 270 | 123 | 6 | 31 | 288 | 37 | 296 | 4.75e-68 | 222 |
MsaG039622 | AT5G03720.1 | 46.296 | 270 | 123 | 6 | 31 | 288 | 37 | 296 | 4.75e-68 | 222 |
MsaG039622 | AT1G67970.1 | 51.053 | 190 | 91 | 2 | 49 | 237 | 19 | 207 | 1.25e-59 | 199 |
MsaG039622 | AT5G54070.1 | 41.262 | 206 | 108 | 3 | 42 | 244 | 63 | 258 | 4.27e-53 | 180 |
MsaG039622 | AT3G22845.1 | 79.208 | 101 | 21 | 0 | 321 | 421 | 114 | 214 | 1.78e-51 | 172 |
MsaG039622 | AT3G24520.1 | 42.857 | 203 | 92 | 2 | 49 | 251 | 17 | 195 | 3.22e-50 | 173 |
MsaG039622 | AT4G13980.1 | 43.478 | 207 | 102 | 4 | 50 | 252 | 24 | 219 | 1.56e-48 | 172 |
MsaG039622 | AT2G26150.3 | 55.245 | 143 | 62 | 2 | 109 | 250 | 49 | 190 | 1.39e-44 | 157 |
MsaG039622 | AT2G26150.2 | 55.245 | 143 | 62 | 2 | 109 | 250 | 49 | 190 | 1.39e-44 | 157 |
MsaG039622 | AT4G18880.1 | 43.455 | 191 | 108 | 0 | 41 | 231 | 7 | 197 | 1.22e-43 | 157 |
MsaG039622 | AT1G46264.1 | 66.981 | 106 | 34 | 1 | 39 | 144 | 24 | 128 | 1.47e-42 | 153 |
MsaG039622 | AT5G45710.3 | 41.146 | 192 | 111 | 2 | 48 | 239 | 12 | 201 | 1.47e-41 | 150 |
MsaG039622 | AT5G45710.1 | 41.146 | 192 | 111 | 2 | 48 | 239 | 12 | 201 | 1.47e-41 | 150 |
MsaG039622 | AT4G11660.1 | 63.636 | 99 | 35 | 1 | 47 | 145 | 57 | 154 | 1.01e-39 | 146 |
MsaG039622 | AT5G62020.1 | 50.769 | 130 | 60 | 1 | 47 | 172 | 21 | 150 | 2.15e-39 | 143 |
MsaG039622 | AT4G36990.1 | 56.522 | 115 | 43 | 1 | 47 | 161 | 12 | 119 | 3.32e-39 | 142 |
MsaG039622 | AT2G41690.1 | 62.766 | 94 | 35 | 0 | 47 | 140 | 38 | 131 | 1.03e-38 | 140 |
MsaG039622 | AT4G18870.1 | 36.290 | 124 | 79 | 0 | 38 | 161 | 135 | 258 | 4.01e-24 | 101 |
MsaG039622 | AT4G18870.1 | 49.438 | 89 | 40 | 2 | 50 | 136 | 14 | 99 | 1.05e-21 | 95.1 |
MsaG039622 | AT3G07680.1 | 39.604 | 101 | 61 | 0 | 321 | 421 | 108 | 208 | 1.44e-14 | 72.8 |
Find 81 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGCAATCTTCACATTAAT+TGG | 0.154501 | 7:-91154306 | None:intergenic |
AAGAACTTGATGAAGGGTTT+TGG | 0.252613 | 7:+91147430 | MsaT039622.1:CDS |
TTTGCAAACTCCCATTTATC+AGG | 0.290173 | 7:-91146847 | None:intergenic |
TGGTGCTAGCTTTGTTGTTT+GGG | 0.306922 | 7:+91145959 | MsaT039622.1:CDS |
GTGGTGCTAGCTTTGTTGTT+TGG | 0.312326 | 7:+91145958 | MsaT039622.1:CDS |
TTAGCTAAGTTATGCACATT+TGG | 0.329783 | 7:-91152037 | None:intergenic |
TGTGTTGAAGTTGGTCGTTT+TGG | 0.363566 | 7:+91146973 | MsaT039622.1:CDS |
CATTTGTTGCTGCTTAATTT+CGG | 0.365368 | 7:-91147124 | None:intergenic |
AGGAGAAGGCCAATTGAGTA+TGG | 0.367381 | 7:+91147249 | MsaT039622.1:CDS |
CTTGATTCTCCATACTCAAT+TGG | 0.368141 | 7:-91147258 | None:intergenic |
TCTAAATACTCTTCTTTCAC+TGG | 0.377680 | 7:-91145759 | None:intergenic |
TTCCTCCATTGCTTGAAGAA+TGG | 0.378113 | 7:-91147088 | None:intergenic |
CAACAAGTCACATAGTTTCA+TGG | 0.398902 | 7:+91145928 | MsaT039622.1:CDS |
CACAAAGACATTTGATGTTG+TGG | 0.406218 | 7:+91145896 | MsaT039622.1:CDS |
AAATGGGAGTTTGCAAATGA+AGG | 0.436132 | 7:+91146853 | MsaT039622.1:CDS |
GCTATGGAAATGCAGGGTCT+TGG | 0.436909 | 7:+91147345 | MsaT039622.1:CDS |
TCAAATGTCTTTGTGAGAAA+TGG | 0.443148 | 7:-91145888 | None:intergenic |
AGGTCTCTGGAGAAAGCATT+TGG | 0.449261 | 7:-91145984 | None:intergenic |
TGCTGAGTTAAGAGAAGCAT+TGG | 0.450097 | 7:+91154323 | MsaT039622.1:CDS |
TTGTTGTGTTTGAAGTATCT+AGG | 0.454609 | 7:-91146011 | None:intergenic |
GGAAGGAGCAGTGTTAGATA+TGG | 0.456890 | 7:+91147294 | MsaT039622.1:CDS |
ATGAATAAAGAACTTGATGA+AGG | 0.466508 | 7:+91147423 | MsaT039622.1:CDS |
AAGAGGTGGTGGAGAGCTTG+AGG | 0.469597 | 7:+91147368 | MsaT039622.1:CDS |
GTATCTAGGAAGAAGGTCTC+TGG | 0.470929 | 7:-91145997 | None:intergenic |
AGAGCTTGAGGAAGAGATTG+AGG | 0.477721 | 7:+91147380 | MsaT039622.1:CDS |
AGTAATTGCTGAATAAAAGC+TGG | 0.482397 | 7:-91147177 | None:intergenic |
CAAGGTCATTGTGTTGAAGT+TGG | 0.497401 | 7:+91146964 | MsaT039622.1:CDS |
GTGGCCAACATGAACATAGA+AGG | 0.501930 | 7:-91152011 | None:intergenic |
GTTATTCCACGGCCAATGGA+GGG | 0.502097 | 7:+91145843 | MsaT039622.1:CDS |
GTGCATAACTTAGCTAAAGA+TGG | 0.502933 | 7:+91152043 | MsaT039622.1:CDS |
CAGGGTCTTGGAAGAGGTGG+TGG | 0.504100 | 7:+91147357 | MsaT039622.1:CDS |
GGTTGTTATTCCACGGCCAA+TGG | 0.506460 | 7:+91145839 | MsaT039622.1:CDS |
TGGATTTGAAGTGTCAGAGT+TGG | 0.506828 | 7:+91147314 | MsaT039622.1:CDS |
GATTGTTGTTGTGAAGTACT+AGG | 0.510219 | 7:-91146937 | None:intergenic |
AATTAAGCAGCAACAAATGA+TGG | 0.512562 | 7:+91147128 | MsaT039622.1:CDS |
GCAAATGAAGGATTTCTAAG+AGG | 0.518927 | 7:+91146865 | MsaT039622.1:CDS |
TGTTATTCCACGGCCAATGG+AGG | 0.521139 | 7:+91145842 | MsaT039622.1:CDS |
ACTTCATGAAGCCCCTCCAT+TGG | 0.523280 | 7:-91145855 | None:intergenic |
GTTTGAAGTATCTAGGAAGA+AGG | 0.525332 | 7:-91146004 | None:intergenic |
TGAAGCCCCTCCATTGGCCG+TGG | 0.526845 | 7:-91145849 | None:intergenic |
TCAGCAATTACTTCAACAGA+AGG | 0.528664 | 7:+91147188 | MsaT039622.1:CDS |
TGAAACTATGTGACTTGTTG+TGG | 0.534841 | 7:-91145925 | None:intergenic |
AATGCTGGCTATGGAAATGC+AGG | 0.541022 | 7:+91147338 | MsaT039622.1:CDS |
GAATCAAGTAATGGTGGTGA+TGG | 0.544567 | 7:+91147273 | MsaT039622.1:CDS |
CTAAATACTCTTCTTTCACT+GGG | 0.546539 | 7:-91145758 | None:intergenic |
GAAATGCAGGGTCTTGGAAG+AGG | 0.548123 | 7:+91147351 | MsaT039622.1:CDS |
TGACAAACAAGTGTTAATGA+TGG | 0.548560 | 7:+91147026 | MsaT039622.1:CDS |
TCAACAGAAGGAAAAGAGAA+AGG | 0.548892 | 7:+91147200 | MsaT039622.1:CDS |
TATGAAAGAGGAAGTGATGA+GGG | 0.553152 | 7:+91145810 | MsaT039622.1:CDS |
TTATTCCACGGCCAATGGAG+GGG | 0.553219 | 7:+91145844 | MsaT039622.1:CDS |
GAAACTATGTGACTTGTTGT+GGG | 0.554070 | 7:-91145924 | None:intergenic |
TTCTTCAAGCAATGGAGGAA+AGG | 0.554568 | 7:+91147091 | MsaT039622.1:CDS |
AGAGTTGGAAATGCTGGCTA+TGG | 0.563110 | 7:+91147329 | MsaT039622.1:CDS |
GATCAACGGTTGTTATTCCA+CGG | 0.563873 | 7:+91145832 | MsaT039622.1:CDS |
ATGGAGGGGCTTCATGAAGT+AGG | 0.569714 | 7:+91145858 | MsaT039622.1:CDS |
CAAGTAATGGTGGTGATGGA+AGG | 0.570233 | 7:+91147277 | MsaT039622.1:CDS |
AGTGTCAGAGTTGGAAATGC+TGG | 0.571819 | 7:+91147323 | MsaT039622.1:CDS |
TGAATAAAGAACTTGATGAA+GGG | 0.573949 | 7:+91147424 | MsaT039622.1:CDS |
ATCCATTCTTCAAGCAATGG+AGG | 0.576630 | 7:+91147086 | MsaT039622.1:CDS |
TCATCATCGATATATGAAAG+AGG | 0.577051 | 7:+91145798 | MsaT039622.1:CDS |
AAGATGCTATTACTAAGAAG+AGG | 0.582617 | 7:+91147229 | MsaT039622.1:CDS |
ATAGTTTCATGGAGCAGAAG+TGG | 0.585048 | 7:+91145939 | MsaT039622.1:CDS |
AAGATCCATTCTTCAAGCAA+TGG | 0.586126 | 7:+91147083 | MsaT039622.1:CDS |
GTGTCCTTCTATGTTCATGT+TGG | 0.591878 | 7:+91152007 | MsaT039622.1:CDS |
AGTTATGCACATTTGGAATG+TGG | 0.602220 | 7:-91152030 | None:intergenic |
GAGTACAAGCTTATTGCAAG+TGG | 0.604992 | 7:+91154590 | MsaT039622.1:CDS |
AGGAAGTGATGAGGGATCAA+CGG | 0.610055 | 7:+91145818 | MsaT039622.1:CDS |
GAGTATGGAGAATCAAGTAA+TGG | 0.613238 | 7:+91147264 | MsaT039622.1:CDS |
ATGCAGGGTCTTGGAAGAGG+TGG | 0.614702 | 7:+91147354 | MsaT039622.1:CDS |
ATATGAAAGAGGAAGTGATG+AGG | 0.618653 | 7:+91145809 | MsaT039622.1:CDS |
CTATTACTAAGAAGAGGAGA+AGG | 0.622937 | 7:+91147235 | MsaT039622.1:CDS |
AAAGACATTTGATGTTGTGG+AGG | 0.626606 | 7:+91145899 | MsaT039622.1:CDS |
AATGTCTTTGTGAGAAATGG+TGG | 0.633018 | 7:-91145885 | None:intergenic |
TTCATATATCGATGATGACG+AGG | 0.649679 | 7:-91145793 | None:intergenic |
TATGGAGAATCAAGTAATGG+TGG | 0.653267 | 7:+91147267 | MsaT039622.1:CDS |
GTCTTTGTGAGAAATGGTGG+TGG | 0.661352 | 7:-91145882 | None:intergenic |
TCACAACAACAATCATCACA+AGG | 0.699849 | 7:+91146946 | MsaT039622.1:CDS |
GCAATGGAGGAAAGGCTACG+TGG | 0.702933 | 7:+91147099 | MsaT039622.1:CDS |
AAACTTGTAAGGTCTACACT+CGG | 0.707311 | 7:-91154653 | None:intergenic |
AAACTATGTGACTTGTTGTG+GGG | 0.712916 | 7:-91145923 | None:intergenic |
ATGCTGGCTATGGAAATGCA+GGG | 0.739262 | 7:+91147339 | MsaT039622.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 91145744 | 91154662 | 91145744 | ID=MsaG039622 |
Chr7 | mRNA | 91145744 | 91154662 | 91145744 | ID=MsaT039622.1;Parent=MsaG039622 |
Chr7 | exon | 91145744 | 91146067 | 91145744 | ID=MsaT039622.1.exon1;Parent=MsaT039622.1 |
Chr7 | CDS | 91145744 | 91146067 | 91145744 | ID=cds.MsaT039622.1;Parent=MsaT039622.1 |
Chr7 | exon | 91146829 | 91147465 | 91146829 | ID=MsaT039622.1.exon2;Parent=MsaT039622.1 |
Chr7 | CDS | 91146829 | 91147465 | 91146829 | ID=cds.MsaT039622.1;Parent=MsaT039622.1 |
Chr7 | exon | 91152002 | 91152064 | 91152002 | ID=MsaT039622.1.exon3;Parent=MsaT039622.1 |
Chr7 | CDS | 91152002 | 91152064 | 91152002 | ID=cds.MsaT039622.1;Parent=MsaT039622.1 |
Chr7 | exon | 91154295 | 91154402 | 91154295 | ID=MsaT039622.1.exon4;Parent=MsaT039622.1 |
Chr7 | CDS | 91154295 | 91154402 | 91154295 | ID=cds.MsaT039622.1;Parent=MsaT039622.1 |
Chr7 | exon | 91154529 | 91154662 | 91154529 | ID=MsaT039622.1.exon5;Parent=MsaT039622.1 |
Chr7 | CDS | 91154529 | 91154662 | 91154529 | ID=cds.MsaT039622.1;Parent=MsaT039622.1 |
Gene Sequence |
Protein sequence |