AlfalfaGEDB | MsaG039645

M. sativa ssp. caerulea / MsaG039645

KEGG: K06062
GO: GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010015 GO:0010321 GO:0010468 GO:0010484 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0061733 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039645	XP_013449820.1	95.756	542	22	1	1	541	1	542	0.0	987

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039645	sp\|Q9AR19\|GCN5_ARATH	71.226	563	138	7	3	541	6	568	0.0	759

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039645	tr\|A0A072U411\|A0A072U411_MEDTR	95.756	542	22	1	1	541	1	542	0.0	987

TFs/TRs:

Gene ID	Type	Classification
MsaG039645	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000431	MsaG039645	0.809808	2.692246e-50	4.576413e-48
MsaG001178	MsaG039645	0.832737	1.442418e-55	4.518581e-53
MsaG001179	MsaG039645	0.807456	8.512362e-50	1.367297e-47
MsaG001237	MsaG039645	0.802429	9.463020e-49	1.351902e-46
MsaG002177	MsaG039645	0.806300	1.490285e-49	2.329303e-47
MsaG003083	MsaG039645	0.828516	1.540725e-54	4.274979e-52
MsaG003276	MsaG039645	0.807635	7.804312e-50	1.258922e-47
MsaG003394	MsaG039645	0.802212	1.048513e-48	1.490451e-46
MsaG004282	MsaG039645	0.820642	1.080238e-52	2.416479e-50
MsaG006529	MsaG039645	0.803768	5.017451e-49	7.392534e-47
MsaG007666	MsaG039645	0.810665	1.762337e-50	3.058720e-48
MsaG008569	MsaG039645	0.801305	1.606161e-48	2.236555e-46
MsaG008584	MsaG039645	0.804265	3.959595e-49	5.901649e-47
MsaG010095	MsaG039645	0.876095	3.810487e-68	5.754013e-65
MsaG011296	MsaG039645	0.819268	2.220136e-52	4.789651e-50
MsaG012931	MsaG039645	0.802390	9.639329e-49	1.375876e-46
MsaG012941	MsaG039645	0.803325	6.191239e-49	9.028999e-47
MsaG012943	MsaG039645	0.812207	8.180573e-51	1.474535e-48
MsaG013657	MsaG039645	0.809017	3.972520e-50	6.625017e-48
MsaG014014	MsaG039645	0.828459	1.590679e-54	4.406551e-52
MsaG014421	MsaG039645	0.818936	2.639147e-52	5.644216e-50
MsaG014422	MsaG039645	0.835299	3.316518e-56	1.120901e-53
MsaG014953	MsaG039645	0.810301	2.110615e-50	3.630857e-48
MsaG016724	MsaG039645	0.835954	2.268269e-56	7.818055e-54
MsaG017329	MsaG039645	0.806344	1.459326e-49	2.283247e-47
MsaG017373	MsaG039645	0.805337	2.370351e-49	3.621790e-47
MsaG018173	MsaG039645	0.800619	2.214226e-48	3.036026e-46
MsaG018553	MsaG039645	0.800638	2.195280e-48	3.011317e-46
MsaG020314	MsaG039645	0.815224	1.785635e-51	3.471420e-49
MsaG021405	MsaG039645	0.825236	9.289426e-54	2.351883e-51
MsaG021575	MsaG039645	0.822227	4.669169e-53	1.089423e-50
MsaG021896	MsaG039645	0.825579	7.708515e-54	1.970253e-51
MsaG023744	MsaG039645	0.801882	1.225010e-48	1.728335e-46
MsaG023882	MsaG039645	0.801132	1.741762e-48	2.415910e-46
MsaG026985	MsaG039645	0.803371	6.059036e-49	8.845539e-47
MsaG028375	MsaG039645	0.801227	1.665871e-48	2.315580e-46
MsaG029899	MsaG039645	0.822256	4.599324e-53	1.073935e-50
MsaG030010	MsaG039645	0.811724	1.041114e-50	1.854455e-48
MsaG030928	MsaG039645	0.845491	7.373650e-59	3.433759e-56
MsaG033766	MsaG039645	0.807861	6.991198e-50	1.133950e-47
MsaG034287	MsaG039645	0.812179	8.296182e-51	1.494355e-48
MsaG034288	MsaG039645	0.828681	1.406595e-54	3.920651e-52
MsaG035270	MsaG039645	0.818265	3.740957e-52	7.861643e-50
MsaG038415	MsaG039645	0.806980	1.072563e-49	1.703447e-47
MsaG038986	MsaG039645	0.809950	2.510532e-50	4.282050e-48
MsaG039701	MsaG039645	0.812989	5.530058e-51	1.016385e-48
MsaG039715	MsaG039645	0.817529	5.474435e-52	1.128858e-49
MsaG039722	MsaG039645	0.812198	8.216971e-51	1.480780e-48
MsaG039723	MsaG039645	0.908223	5.175186e-81	4.360904e-77
MsaG039724	MsaG039645	0.944533	4.999809e-103	7.050058e-98
MsaG039639	MsaG039645	0.814978	2.022980e-51	3.908520e-49
MsaG039640	MsaG039645	0.825416	8.421561e-54	2.142777e-51
MsaG039643	MsaG039645	0.822405	4.248661e-53	9.960697e-51
MsaG039645	MsaG039647	0.817826	4.695958e-52	9.757861e-50
MsaG039645	MsaG039739	0.821548	6.695103e-53	1.534066e-50
MsaG039645	MsaG040077	0.826769	4.030884e-54	1.064920e-51
MsaG039645	MsaG040384	0.820466	1.185115e-52	2.638874e-50
MsaG039645	MsaG040740	0.827119	3.327660e-54	8.877776e-52
MsaG039645	MsaG040775	0.802901	7.569565e-49	1.093145e-46
MsaG039645	MsaG040980	0.818075	4.127949e-52	8.632718e-50
MsaG039645	MsaG040982	0.802250	1.029659e-48	1.464939e-46
MsaG039645	MsaG040985	0.808936	4.132374e-50	6.878245e-48
MsaG039645	MsaG040994	0.814541	2.526207e-51	4.827107e-49
MsaG039645	MsaG041513	0.808780	4.461190e-50	7.397760e-48
MsaG039645	MsaG042382	0.801003	1.850219e-48	2.558863e-46
MsaG039645	MsaG043665	0.825576	7.721203e-54	1.973338e-51
MsaG039645	MsaG044354	0.812446	7.258773e-51	1.316217e-48
MsaG039645	MsaG044606	0.814539	2.528883e-51	4.831958e-49
MsaG039645	MsaG045125	0.833604	8.798610e-56	2.827271e-53
MsaG039645	MsaG045278	0.834977	3.996726e-56	1.337800e-53
MsaG039645	MsaG045423	0.809401	3.289431e-50	5.536717e-48
MsaG039645	MsaG045446	0.805006	2.777063e-49	4.210908e-47
MsaG039645	MsaG046051	0.804876	2.956019e-49	4.468678e-47
MsaG039645	MsaG046423	0.806728	1.212165e-49	1.913797e-47
MsaG039645	MsaG046630	0.821107	8.451182e-53	1.913978e-50
MsaG039645	MsaG046816	0.816228	1.069014e-51	2.131923e-49
MsaG039645	MsaG008494	0.800511	2.328963e-48	3.185473e-46
MsaG039645	MsaG008770	0.826837	3.883999e-54	1.028055e-51
MsaG039645	MsaG020796	0.800854	1.984561e-48	2.735445e-46
MsaG039645	MsaG021169	0.804300	3.892911e-49	5.807107e-47
MsaG039645	MsaG027786	0.808099	6.225664e-50	1.015553e-47
MsaG039645	MsaG033574	0.800963	1.885352e-48	2.605074e-46
MsaG039645	MsaG031221	0.840238	1.813062e-57	7.130676e-55
MsaG039645	MsaG033582	0.818425	3.443307e-52	7.266085e-50
MsaG039645	MsaG037384	0.801087	1.779434e-48	2.465590e-46
MsaG039645	MsaG039770	0.807701	7.555476e-50	1.220774e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039645	MtrunA17_Chr7g0260581	95.756	542	22	1	1	541	1	542	0.0	987
MsaG039645	MtrunA17_Chr8g0363991	78.713	404	81	4	143	541	44	447	0.0	651
MsaG039645	MtrunA17_Chr2g0285151	40.860	93	52	2	439	529	85	176	1.44e-13	73.2
MsaG039645	MtrunA17_Chr3g0143981	43.662	71	39	1	453	523	144	213	5.19e-13	71.6
MsaG039645	MtrunA17_Chr3g0099181	39.437	71	42	1	453	523	173	242	9.88e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039645	AT3G54610.1	71.226	563	138	7	3	541	6	568	0.0	759
MsaG039645	AT1G76380.2	47.761	67	34	1	453	519	166	231	2.86e-13	72.8
MsaG039645	AT1G76380.1	47.761	67	34	1	453	519	165	230	2.98e-13	72.8
MsaG039645	AT5G63320.3	37.113	97	58	2	439	533	167	262	2.00e-12	70.1
MsaG039645	AT5G63320.2	37.113	97	58	2	439	533	167	262	2.00e-12	70.1
MsaG039645	AT1G76380.3	46.269	67	35	1	453	519	165	230	2.41e-12	70.1
MsaG039645	AT5G63320.1	37.113	97	58	2	439	533	167	262	7.26e-12	68.9
MsaG039645	AT1G20670.1	42.254	71	40	1	453	523	196	265	8.95e-12	68.2
MsaG039645	AT3G27260.4	35.088	114	69	3	402	511	143	255	3.52e-11	66.6
MsaG039645	AT3G27260.3	35.088	114	69	3	402	511	143	255	3.94e-11	66.2
MsaG039645	AT3G27260.1	35.088	114	69	3	402	511	143	255	4.38e-11	66.2
MsaG039645	AT3G27260.2	35.088	114	69	3	402	511	94	206	4.48e-11	66.2

Find 150 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTTGTAATATATTGTTTC+TGG	0.154930	7:-91420484	None:intergenic
ACGGCTGATGAGCAAGTAAA+AGG	0.251275	7:+91413464	MsaT039645.1:CDS
TATTGTTTCTGGAGAATTAT+AGG	0.301554	7:-91420473	None:intergenic
TTATAACCATTACAGACTTA+TGG	0.303288	7:-91412754	None:intergenic
CGGAGACGAGTTTGCGTTTG+TGG	0.311427	7:-91409880	None:intergenic
GCTTTGCTCCATAGGTTGAT+AGG	0.326757	7:+91411745	MsaT039645.1:intron
GCTGGTGGTGGTTCTGTTCC+CGG	0.339648	7:+91410229	MsaT039645.1:CDS
TTGATGATTTCATAATAATC+AGG	0.349454	7:-91420009	None:intergenic
ATGTACTCCTTGGGCATATT+GGG	0.349906	7:-91411796	None:intergenic
AATGTACTCCTTGGGCATAT+TGG	0.350870	7:-91411797	None:intergenic
TGTTCCCGGCATTGTGGTTA+AGG	0.351443	7:+91410243	MsaT039645.1:CDS
CAGTATGCTCGTGATGTAGA+TGG	0.352269	7:+91413518	MsaT039645.1:CDS
ACGAATTATTACCTTGCATA+TGG	0.360069	7:-91412812	None:intergenic
GCGGAGGACCACTCCGTTCC+CGG	0.369848	7:+91409801	MsaT039645.1:CDS
GTCGCGTGTGTCGGCGGATA+AGG	0.370974	7:-91409933	None:intergenic
ATAAGTCTGTAATGGTTATA+AGG	0.370987	7:+91412756	MsaT039645.1:CDS
GTACATTGTCCGGCTTGTTA+TGG	0.371441	7:+91411813	MsaT039645.1:CDS
CGCTGATGCTTGGCCATTCA+AGG	0.378468	7:+91419963	MsaT039645.1:CDS
AATTGTCACATTGTTTATCC+TGG	0.388783	7:+91417224	MsaT039645.1:CDS
TTGTCATTTCAGTTACATAA+AGG	0.392837	7:+91415066	MsaT039645.1:intron
GTGGGATGGAGAAGCGGATT+GGG	0.395143	7:-91409828	None:intergenic
AAATCAGTGTAAGGAAGCTT+TGG	0.395327	7:-91415127	None:intergenic
TGTTGGATATTTCATCAAAC+AGG	0.399632	7:+91413577	MsaT039645.1:CDS
TGAGGTGGCGGAAGCGGAGG+CGG	0.412980	7:-91409852	None:intergenic
GTCGTCGACAACTGCATCTT+CGG	0.415404	7:-91410029	None:intergenic
ACCTTCTGAAAATCGATTCC+AGG	0.416400	7:-91417242	None:intergenic
GATGGATGAGGTGGCGGAAG+CGG	0.418204	7:-91409858	None:intergenic
GAACGGTGGCGCGTGATCTT+CGG	0.429922	7:-91409900	None:intergenic
CCTGTCACCGGTGCCAGTGC+TGG	0.430554	7:+91410211	MsaT039645.1:CDS
TCCCTACTGAACTTTGTTGC+CGG	0.434871	7:-91420656	None:intergenic
AACAGAACCACCACCAGCAC+TGG	0.435998	7:-91410224	None:intergenic
ATCTGAAGACAATGAGTAAG+AGG	0.441257	7:+91420374	MsaT039645.1:CDS
ACTGAACTTTGTTGCCGGAC+TGG	0.445882	7:-91420651	None:intergenic
CATTCACGGTTCAGAACCTT+AGG	0.449882	7:+91419668	MsaT039645.1:CDS
ATTTATGCGTACACTTCTAA+AGG	0.451557	7:+91419733	MsaT039645.1:CDS
ATCAGCCGTAATTGCACAAA+AGG	0.453536	7:-91413450	None:intergenic
GCATCAACGGGTTCCTTGAA+TGG	0.456294	7:-91419976	None:intergenic
CGTGAATGACCCCACTGATC+AGG	0.456735	7:-91419653	None:intergenic
TTTCTTGAGACTCTCTTCCC+TGG	0.457802	7:-91410320	None:intergenic
GATGCTCTCGAGGTCGTCAT+TGG	0.466061	7:-91409969	None:intergenic
TGATGGAGTTGACCAGCATA+TGG	0.467588	7:+91410929	MsaT039645.1:CDS
TGGATGGACTCCTGATCAGT+GGG	0.469379	7:+91419643	MsaT039645.1:CDS
CCAGCACTGGCACCGGTGAC+AGG	0.470254	7:-91410211	None:intergenic
CACAATATGCAGAAAGAAGC+TGG	0.470711	7:+91417571	MsaT039645.1:intron
GGCGGAAGCGGAGGCGGAGT+GGG	0.471897	7:-91409846	None:intergenic
CTGATCAGTGGGGTCATTCA+CGG	0.472254	7:+91419654	MsaT039645.1:CDS
ATGGTTGATAGCCAGAGGTT+TGG	0.476007	7:+91413419	MsaT039645.1:intron
GGAACATCTCGTGCATCAAC+GGG	0.478670	7:-91419988	None:intergenic
GAAGCGGAGGCGGAGTGGGA+TGG	0.479379	7:-91409842	None:intergenic
CTAGTGGTGCTTATAGTGCC+AGG	0.482208	7:+91410302	MsaT039645.1:CDS
AAGCCGGACAATGTACTCCT+TGG	0.484190	7:-91411806	None:intergenic
GGATGAGGTGGCGGAAGCGG+AGG	0.488516	7:-91409855	None:intergenic
ATAAGGCGTAATCACGTTGT+TGG	0.488617	7:+91412773	MsaT039645.1:CDS
TTTACATGTCTGTCAAATGA+TGG	0.489812	7:+91410912	MsaT039645.1:CDS
GACGAGTTTGCGTTTGTGGA+TGG	0.492132	7:-91409876	None:intergenic
ATCTTACCTGTCTTTGACGA+CGG	0.492727	7:-91415162	None:intergenic
ATCCTCCTTAACCACAATGC+CGG	0.498095	7:-91410248	None:intergenic
AGTGGGATGGAGAAGCGGAT+TGG	0.499028	7:-91409829	None:intergenic
AAGGAGCCATAAGTCTGTAA+TGG	0.501041	7:+91412748	MsaT039645.1:intron
TGCCCAAGGAGTACATTGTC+CGG	0.501356	7:+91411803	MsaT039645.1:CDS
ATAGTTGATAAATCAGTGTA+AGG	0.505112	7:-91415136	None:intergenic
GGCGCCGTCGCGTGTGTCGG+CGG	0.506599	7:-91409939	None:intergenic
TAAGGCGCCGTCGCGTGTGT+CGG	0.507506	7:-91409942	None:intergenic
AGTTACATAAAGGATTATGA+TGG	0.508182	7:+91415076	MsaT039645.1:intron
TTCGTATTGCGAGGAGCGGA+AGG	0.508578	7:-91410124	None:intergenic
AGGAACATCTCGTGCATCAA+CGG	0.509312	7:-91419989	None:intergenic
AAAATTATTGAAGACATCCC+TGG	0.509554	7:+91417604	MsaT039645.1:CDS
CGGCTGATGAGCAAGTAAAA+GGG	0.509794	7:+91413465	MsaT039645.1:CDS
TGAAATCATCAAAGATCCAA+TGG	0.510815	7:+91420020	MsaT039645.1:CDS
TGCATGATCACGCTGATGCT+TGG	0.512665	7:+91419953	MsaT039645.1:CDS
AGCCGGACAATGTACTCCTT+GGG	0.520322	7:-91411805	None:intergenic
CTGGATGGACTCCTGATCAG+TGG	0.521067	7:+91419642	MsaT039645.1:CDS
GAGTAAGAGGGTGGAGTCAG+AGG	0.522291	7:+91420387	MsaT039645.1:CDS
TCCTCCTTAACCACAATGCC+GGG	0.522458	7:-91410247	None:intergenic
GTTACATAAAGGATTATGAT+GGG	0.522634	7:+91415077	MsaT039645.1:intron
ATCAGAGTCGTTTCCACGAG+CGG	0.526319	7:-91409993	None:intergenic
TGGCGGAAGCGGAGGCGGAG+TGG	0.526371	7:-91409847	None:intergenic
GAGTTGACCAGCATATGGTT+TGG	0.527640	7:+91410934	MsaT039645.1:CDS
TTTGCGTTTGTGGATGGATG+AGG	0.531469	7:-91409870	None:intergenic
TCTGATGGAGCTAAAGATGC+TGG	0.534732	7:+91410184	MsaT039645.1:CDS
AGGCTATCTCACCAAACCTC+TGG	0.536519	7:-91413430	None:intergenic
GAGAAGCGGATTGGGAACTC+CGG	0.537455	7:-91409820	None:intergenic
GCTCTCGAGGTCGTCATTGG+AGG	0.537689	7:-91409966	None:intergenic
CTCGAGAGCATCTCCGCTCG+TGG	0.538084	7:+91409980	MsaT039645.1:CDS
GAAATCATCAAAGATCCAAT+GGG	0.538815	7:+91420021	MsaT039645.1:CDS
GGCGGAGTGGGATGGAGAAG+CGG	0.540145	7:-91409834	None:intergenic
TATGATCCGTCGTCAAAGAC+AGG	0.542109	7:+91415156	MsaT039645.1:CDS
ATGCCAATAACAGGAGAGGC+TGG	0.548422	7:+91419623	MsaT039645.1:intron
CACATTTGAGATGTTTGTTG+AGG	0.548474	7:+91420420	MsaT039645.1:CDS
ACCGGTGCCAGTGCTGGTGG+TGG	0.550053	7:+91410217	MsaT039645.1:CDS
TGTTATACCAAACCATATGC+TGG	0.553929	7:-91410941	None:intergenic
TGCGGAATTTCACTGCTGCT+AGG	0.554071	7:+91410089	MsaT039645.1:CDS
TTGGAGAAAGATCGATGGCA+TGG	0.554213	7:+91414734	MsaT039645.1:CDS
ATATCCAACAGCATTATTGT+CGG	0.554921	7:-91413564	None:intergenic
GTTAAGATCGAACAATCTGA+TGG	0.556232	7:+91410169	MsaT039645.1:CDS
GGAAGAGAGTCTCAAGAAAG+AGG	0.556806	7:+91410324	MsaT039645.1:CDS
GAGGTCGTCATTGGAGGTTA+AGG	0.557908	7:-91409960	None:intergenic
TATGCCGACAATAATGCTGT+TGG	0.559755	7:+91413560	MsaT039645.1:CDS
GTGCATTCGATTCTCCAGTC+CGG	0.560644	7:+91420637	MsaT039645.1:CDS
ACCACCACCAGCACTGGCAC+CGG	0.564086	7:-91410218	None:intergenic
GATGAGCAAGTAAAAGGGTA+TGG	0.564172	7:+91413470	MsaT039645.1:CDS
AGGCGTAATCACGTTGTTGG+AGG	0.565781	7:+91412776	MsaT039645.1:CDS
GTCACCGGTGCCAGTGCTGG+TGG	0.568498	7:+91410214	MsaT039645.1:CDS
GTGTCGGCGGATAAGGAAGA+AGG	0.571324	7:-91409926	None:intergenic
GATGCTGGACCTCCTGTCAC+CGG	0.572004	7:+91410199	MsaT039645.1:CDS
CGGATTGGGAACTCCGGGAA+CGG	0.572901	7:-91409814	None:intergenic
AGAAGCGGATTGGGAACTCC+GGG	0.578469	7:-91409819	None:intergenic
ACTGAAAATTTGCAGACTAG+TGG	0.582825	7:+91410286	MsaT039645.1:CDS
AATGTCGGTAGAACCGCCTA+AGG	0.583109	7:-91419684	None:intergenic
ATTTACTAAAGAGATTCACT+TGG	0.583909	7:+91414715	MsaT039645.1:CDS
CAATAACAGGAGAGGCTGGA+TGG	0.587038	7:+91419627	MsaT039645.1:intron
GTCCGGCAACAAAGTTCAGT+AGG	0.592842	7:+91420654	MsaT039645.1:CDS
GATAAGGAAGAAGGAGGGAA+CGG	0.599465	7:-91409917	None:intergenic
TTCACTTGGAGAAAGATCGA+TGG	0.601600	7:+91414729	MsaT039645.1:CDS
TTTGTGGATGGATGAGGTGG+CGG	0.603088	7:-91409864	None:intergenic
TATATTACAAATGTGCTACA+AGG	0.604883	7:+91420494	MsaT039645.1:CDS
TGGAGAAAGATCGATGGCAT+GGG	0.610281	7:+91414735	MsaT039645.1:CDS
GCACTGGCACCGGTGACAGG+AGG	0.611069	7:-91410208	None:intergenic
TACATAAAGGATTATGATGG+GGG	0.611600	7:+91415079	MsaT039645.1:CDS
TCCCGGCATTGTGGTTAAGG+AGG	0.613963	7:+91410246	MsaT039645.1:CDS
GCGTTTGTGGATGGATGAGG+TGG	0.614248	7:-91409867	None:intergenic
TTACATATCGTCCATATGCA+AGG	0.615036	7:+91412801	MsaT039645.1:CDS
CACGAGCGGAGATGCTCTCG+AGG	0.618882	7:-91409979	None:intergenic
TAAAGTACGTACTTAAACCA+GGG	0.618961	7:-91417621	None:intergenic
TCCGGCAACAAAGTTCAGTA+GGG	0.624085	7:+91420655	MsaT039645.1:CDS
AAGGAAGAAGGAGGGAACGG+TGG	0.624336	7:-91409914	None:intergenic
AGCAGCAGTGAAATTCCGCA+TGG	0.625316	7:-91410086	None:intergenic
TTGTCCGGCTTGTTATGGAT+AGG	0.625760	7:+91411818	MsaT039645.1:CDS
TCACGGTTCAGAACCTTAGG+CGG	0.626652	7:+91419671	MsaT039645.1:CDS
AGTATGCTCGTGATGTAGAT+GGG	0.632008	7:+91413519	MsaT039645.1:CDS
TCGGCGGATAAGGAAGAAGG+AGG	0.632387	7:-91409923	None:intergenic
TGGGAACTCCGGGAACGGAG+TGG	0.633367	7:-91409809	None:intergenic
TTACATAAAGGATTATGATG+GGG	0.635970	7:+91415078	MsaT039645.1:CDS
TCTGAAGACAATGAGTAAGA+GGG	0.636310	7:+91420375	MsaT039645.1:CDS
AAGATGGAATCACACGGCGG+AGG	0.639882	7:+91409785	None:intergenic
ATAAAGTACGTACTTAAACC+AGG	0.643028	7:-91417622	None:intergenic
ATTACCTATCCATAACAAGC+CGG	0.643590	7:-91411822	None:intergenic
TAGTGGTGCTTATAGTGCCA+GGG	0.645563	7:+91410303	MsaT039645.1:CDS
GAAGACAATGAGTAAGAGGG+TGG	0.646755	7:+91420378	MsaT039645.1:CDS
TGGTTCTGTTCCCGGCATTG+TGG	0.649546	7:+91410237	MsaT039645.1:CDS
ACAACTTCCCAATATGCCCA+AGG	0.664012	7:+91411789	MsaT039645.1:CDS
TTATCCGCCGACACACGCGA+CGG	0.678662	7:+91409935	MsaT039645.1:CDS
GGATGGACTCCTGATCAGTG+GGG	0.689699	7:+91419644	MsaT039645.1:CDS
CGGCGGATAAGGAAGAAGGA+GGG	0.691761	7:-91409922	None:intergenic
AGCAGTGAAATTCCGCATGG+AGG	0.698326	7:-91410083	None:intergenic
ATGACAACGGTTCCTCCATG+CGG	0.702038	7:+91410071	MsaT039645.1:CDS
AACCCTAAGATGGAATCACA+CGG	0.703924	7:+91409779	None:intergenic
GATCTTCGTATTGCGAGGAG+CGG	0.710031	7:-91410128	None:intergenic
GACGAGTACGATAATGACAA+CGG	0.726249	7:+91410058	MsaT039645.1:CDS
CCTAAGATGGAATCACACGG+CGG	0.818286	7:+91409782	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	91409788	91420675	91409788	ID=MsaG039645
Chr7	mRNA	91409788	91420675	91409788	ID=MsaT039645.1;Parent=MsaG039645
Chr7	exon	91409788	91410345	91409788	ID=MsaT039645.1.exon1;Parent=MsaT039645.1
Chr7	CDS	91409788	91410345	91409788	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91410891	91410955	91410891	ID=MsaT039645.1.exon2;Parent=MsaT039645.1
Chr7	CDS	91410891	91410955	91410891	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91411759	91411839	91411759	ID=MsaT039645.1.exon3;Parent=MsaT039645.1
Chr7	CDS	91411759	91411839	91411759	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91412751	91412822	91412751	ID=MsaT039645.1.exon4;Parent=MsaT039645.1
Chr7	CDS	91412751	91412822	91412751	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91413430	91413598	91413430	ID=MsaT039645.1.exon5;Parent=MsaT039645.1
Chr7	CDS	91413430	91413598	91413430	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91414713	91414756	91414713	ID=MsaT039645.1.exon6;Parent=MsaT039645.1
Chr7	CDS	91414713	91414756	91414713	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91415078	91415177	91415078	ID=MsaT039645.1.exon7;Parent=MsaT039645.1
Chr7	CDS	91415078	91415177	91415078	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91417194	91417262	91417194	ID=MsaT039645.1.exon8;Parent=MsaT039645.1
Chr7	CDS	91417194	91417262	91417194	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91417583	91417631	91417583	ID=MsaT039645.1.exon9;Parent=MsaT039645.1
Chr7	CDS	91417583	91417631	91417583	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91419636	91419754	91419636	ID=MsaT039645.1.exon10;Parent=MsaT039645.1
Chr7	CDS	91419636	91419754	91419636	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91419949	91420042	91419949	ID=MsaT039645.1.exon11;Parent=MsaT039645.1
Chr7	CDS	91419949	91420042	91419949	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91420374	91420515	91420374	ID=MsaT039645.1.exon12;Parent=MsaT039645.1
Chr7	CDS	91420374	91420515	91420374	ID=cds.MsaT039645.1;Parent=MsaT039645.1
Chr7	exon	91420612	91420675	91420612	ID=MsaT039645.1.exon13;Parent=MsaT039645.1
Chr7	CDS	91420612	91420675	91420612	ID=cds.MsaT039645.1;Parent=MsaT039645.1

Gene Sequence

>MsaT039645.1

ATGGAATCACACGGCGGAGGACCACTCCGTTCCCGGAGTTCCCAATCCGCTTCTCCATCCCACTCCGCCTCCGCTTCCGCCACCTCATCCATCCACAAACGCAAACTCGTCTCCGAAGATCACGCGCCACCGTTCCCTCCTTCTTCCTTATCCGCCGACACACGCGACGGCGCCTTAACCTCCAATGACGACCTCGAGAGCATCTCCGCTCGTGGAAACGACTCTGATTCTGATGACGATTCCGAAGATGCAGTTGTCGACGACGACGAAGACGAGTACGATAATGACAACGGTTCCTCCATGCGGAATTTCACTGCTGCTAGGCTTAACAATGCTCCTTCCGCTCCTCGCAATACGAAGATCAAAAGTGAAAATTCAACTGTTAAGATCGAACAATCTGATGGAGCTAAAGATGCTGGACCTCCTGTCACCGGTGCCAGTGCTGGTGGTGGTTCTGTTCCCGGCATTGTGGTTAAGGAGGATGCGACGAAGATATTCACTGAAAATTTGCAGACTAGTGGTGCTTATAGTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAAGAAACTGGAAAACTCAAATTTACATGTCTGTCAAATGATGGAGTTGACCAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGGCTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGTCCATATGCAAGCCAGAGGTTTGGTGAGATAGCCTTTTGTGCAATTACGGCTGATGAGCAAGTAAAAGGGTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCTCGTGATGTAGATGGGCTGACACATTTTCTCACATATGCCGACAATAATGCTGTTGGATATTTCATCAAACAGGGATTTACTAAAGAGATTCACTTGGAGAAAGATCGATGGCATGGTTACATAAAGGATTATGATGGGGGAATTCTCATGGAATGTAAGATTGATCCAAAGCTTCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGACAGGCAATAGATGAAAAGATTAGAGAATTGTCTAATTGTCACATTGTTTATCCTGGAATCGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAGAAAATTATTGAAGACATCCCTGGTTTAAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGGTTCAGAACCTTAGGCGGTTCTACCGACATTGCTACAAATCTAAAACATTTAACTGCATTTATGCGTACACTTCTAAAGACGATGCATGATCACGCTGATGCTTGGCCATTCAAGGAACCCGTTGATGCACGAGATGTTCCTGATTATTATGAAATCATCAAAGATCCAATGGATCTGAAGACAATGAGTAAGAGGGTGGAGTCAGAGGTATATTATGTCACATTTGAGATGTTTGTTGAGGATGTCAAAAGAATGTTTTCGAATGCACGGACCTATAATTCTCCAGAAACAATATATTACAAATGTGCTACAAGGCTAGAAGCACATTTTCAAAGCAAAGTGCATTCGATTCTCCAGTCCGGCAACAAAGTTCAGTAG

Protein sequence

>MsaT039645.1

MESHGGGPLRSRSSQSASPSHSASASATSSIHKRKLVSEDHAPPFPPSSLSADTRDGALTSNDDLESISARGNDSDSDDDSEDAVVDDDEDEYDNDNGSSMRNFTAARLNNAPSAPRNTKIKSENSTVKIEQSDGAKDAGPPVTGASAGGGSVPGIVVKEDATKIFTENLQTSGAYSAREESLKKEEETGKLKFTCLSNDGVDQHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWHGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIEDIPGLREAGWTPDQWGHSRFRTLGGSTDIATNLKHLTAFMRTLLKTMHDHADAWPFKEPVDARDVPDYYEIIKDPMDLKTMSKRVESEVYYVTFEMFVEDVKRMFSNARTYNSPETIYYKCATRLEAHFQSKVHSILQSGNKVQ*