AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039678

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039678 MtrunA17_Chr7g0260841 98.012 503 10 0 1 503 1 503 0.0 1026
MsaG039678 MtrunA17_Chr7g0275821 54.348 184 65 3 335 502 232 412 9.98e-51 178
MsaG039678 MtrunA17_Chr7g0275821 30.939 181 93 7 5 158 6 181 1.98e-15 78.6
MsaG039678 MtrunA17_Chr8g0346161 28.306 484 242 15 43 481 19 442 2.15e-42 157
MsaG039678 MtrunA17_Chr5g0411341 42.584 209 81 3 328 501 466 670 1.23e-39 152
MsaG039678 MtrunA17_Chr5g0411341 26.519 181 125 4 49 223 44 222 2.28e-12 69.7
MsaG039678 MtrunA17_Chr8g0346151 27.716 451 215 10 63 469 38 421 4.34e-38 145
MsaG039678 MtrunA17_Chr8g0366751 43.575 179 66 3 337 480 444 622 4.01e-37 145
MsaG039678 MtrunA17_Chr8g0366751 29.348 184 122 6 49 226 53 234 1.03e-13 73.9
MsaG039678 MtrunA17_Chr4g0049331 56.250 64 28 0 353 416 133 196 7.66e-17 81.3
MsaG039678 MtrunA17_Chr5g0400661 46.591 88 42 2 333 416 123 209 2.92e-16 80.1
MsaG039678 MtrunA17_Chr1g0185621 42.857 98 51 2 326 419 443 539 2.35e-14 75.9
MsaG039678 MtrunA17_Chr1g0211081 43.182 88 49 1 324 410 285 372 3.44e-14 75.1
MsaG039678 MtrunA17_Chr4g0054561 46.341 82 38 2 336 417 140 215 4.57e-14 73.2
MsaG039678 MtrunA17_Chr5g0411331 28.495 186 115 6 49 223 27 205 5.41e-14 72.0
MsaG039678 MtrunA17_Chr4g0033391 31.765 170 77 4 245 408 64 200 6.59e-14 72.8
MsaG039678 MtrunA17_Chr2g0280161 54.386 57 26 0 355 411 177 233 9.35e-14 72.8
MsaG039678 MtrunA17_Chr2g0298751 42.308 104 46 4 356 445 53 156 1.37e-13 70.5
MsaG039678 MtrunA17_Chr4g0054571 53.704 54 25 0 355 408 150 203 4.13e-13 70.5
MsaG039678 MtrunA17_Chr2g0307131 37.168 113 58 3 296 408 133 232 4.71e-13 70.5
MsaG039678 MtrunA17_Chr4g0033281 37.113 97 51 1 312 408 120 206 8.40e-13 69.7
MsaG039678 MtrunA17_Chr8g0386921 27.861 201 128 6 41 231 1 194 1.43e-12 70.1
MsaG039678 MtrunA17_Chr8g0386921 50.820 61 30 0 351 411 402 462 7.07e-12 67.8
MsaG039678 MtrunA17_Chr4g0054551 38.462 104 56 3 341 441 138 236 1.43e-12 68.9
MsaG039678 MtrunA17_Chr8g0365711 22.129 357 177 12 188 496 111 414 2.39e-12 68.9
MsaG039678 MtrunA17_Chr7g0225901 40.625 96 51 3 313 408 52 141 2.64e-12 67.0
MsaG039678 MtrunA17_Chr5g0400671 32.231 121 57 2 342 441 145 261 2.66e-12 67.8
MsaG039678 MtrunA17_Chr3g0131691 53.448 58 27 0 353 410 296 353 2.70e-12 68.9
MsaG039678 MtrunA17_Chr5g0400621 43.836 73 39 1 338 410 142 212 3.47e-12 67.8
MsaG039678 MtrunA17_Chr4g0054581 45.588 68 31 1 341 408 190 251 3.86e-12 67.8
MsaG039678 MtrunA17_Chr7g0252041 51.724 58 28 0 353 410 284 341 4.76e-12 68.2
MsaG039678 MtrunA17_Chr2g0333621 35.652 115 66 4 308 418 90 200 7.15e-12 66.6
MsaG039678 MtrunA17_Chr4g0033291 30.488 164 95 3 245 408 64 208 7.35e-12 66.6
MsaG039678 MtrunA17_Chr5g0400641 50.000 52 26 0 359 410 2 53 8.99e-12 63.5
MsaG039678 MtrunA17_Chr6g0468461 51.852 54 26 0 355 408 173 226 1.59e-11 65.9
MsaG039678 MtrunA17_Chr4g0054621 33.884 121 67 2 297 408 109 225 2.12e-11 65.5
MsaG039678 MtrunA17_Chr2g0307141 51.852 54 26 0 355 408 183 236 2.64e-11 65.1
MsaG039678 MtrunA17_Chr2g0333641 32.031 128 82 3 308 433 89 213 3.19e-11 64.7
MsaG039678 MtrunA17_Chr2g0320291 28.000 150 86 4 359 486 137 286 7.18e-11 63.5
MsaG039678 MtrunA17_Chr4g0028071 43.939 66 34 1 345 410 142 204 7.37e-11 63.5
MsaG039678 MtrunA17_Chr6g0468491 50.000 54 27 0 355 408 137 190 8.60e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039678 AT4G16430.1 47.826 506 218 11 3 502 2 467 1.05e-160 464
MsaG039678 AT2G46510.1 35.000 560 272 14 9 500 9 544 1.75e-93 295
MsaG039678 AT1G01260.1 52.096 167 72 3 338 502 416 576 1.25e-47 174
MsaG039678 AT1G01260.1 36.803 269 137 8 5 245 5 268 1.43e-41 157
MsaG039678 AT1G01260.2 52.096 167 72 3 338 502 416 576 1.25e-47 174
MsaG039678 AT1G01260.2 36.803 269 137 8 5 245 5 268 1.43e-41 157
MsaG039678 AT1G01260.3 52.096 167 72 3 338 502 416 576 1.25e-47 174
MsaG039678 AT1G01260.3 36.803 269 137 8 5 245 5 268 1.43e-41 157
MsaG039678 AT4G17880.1 28.039 510 285 13 49 481 62 566 3.64e-46 170
MsaG039678 AT1G32640.1 42.105 190 81 2 336 500 433 618 1.08e-36 144
MsaG039678 AT5G46760.1 40.816 196 88 1 336 503 396 591 4.61e-36 141
MsaG039678 AT5G46830.1 28.364 483 290 16 41 481 23 491 2.73e-35 138
MsaG039678 AT4G00870.1 37.059 170 73 5 333 468 220 389 1.82e-20 94.0
MsaG039678 AT4G00480.3 24.742 388 245 13 50 409 23 391 6.29e-20 93.2
MsaG039678 AT4G00480.1 24.742 388 245 13 50 409 23 391 6.50e-20 93.2
MsaG039678 AT4G00480.2 24.742 388 245 13 50 409 23 391 6.81e-20 93.2
MsaG039678 AT4G29930.6 27.419 186 111 3 327 493 31 211 2.24e-15 75.9
MsaG039678 AT2G16910.1 27.881 269 147 9 195 422 121 383 2.91e-15 79.0
MsaG039678 AT4G29930.2 26.776 183 113 4 327 493 31 208 6.28e-15 74.7
MsaG039678 AT5G57150.5 46.512 86 33 1 325 410 37 109 8.07e-15 74.3
MsaG039678 AT5G57150.3 46.512 86 33 1 325 410 38 110 8.81e-15 73.9
MsaG039678 AT5G57150.2 46.512 86 33 1 325 410 38 110 9.25e-15 73.9
MsaG039678 AT5G57150.1 46.512 86 33 1 325 410 37 109 1.45e-14 73.9
MsaG039678 AT5G57150.4 46.512 86 33 1 325 410 38 110 1.76e-14 73.9
MsaG039678 AT4G37850.2 49.333 75 38 0 337 411 134 208 2.64e-14 74.3
MsaG039678 AT4G37850.1 49.333 75 38 0 337 411 134 208 2.64e-14 74.3
MsaG039678 AT1G63650.3 47.761 67 35 0 351 417 401 467 6.45e-14 74.7
MsaG039678 AT1G63650.3 26.961 204 126 4 42 229 9 205 2.58e-13 72.8
MsaG039678 AT1G63650.1 47.761 67 35 0 351 417 401 467 6.45e-14 74.7
MsaG039678 AT1G63650.1 26.961 204 126 4 42 229 9 205 2.58e-13 72.8
MsaG039678 AT1G63650.2 47.761 67 35 0 351 417 401 467 6.45e-14 74.7
MsaG039678 AT1G63650.2 26.961 204 126 4 42 229 9 205 2.58e-13 72.8
MsaG039678 AT4G29930.3 38.835 103 56 2 327 427 31 128 1.94e-13 70.9
MsaG039678 AT4G29930.7 38.835 103 56 2 327 427 31 128 1.94e-13 70.9
MsaG039678 AT4G09820.1 27.108 166 106 2 335 496 354 508 2.10e-13 72.8
MsaG039678 AT4G29930.1 38.835 103 56 2 327 427 31 128 2.38e-13 70.5
MsaG039678 AT4G29930.4 38.835 103 56 2 327 427 31 128 2.46e-13 68.9
MsaG039678 AT4G29930.5 26.901 171 104 4 327 481 31 196 2.46e-13 70.1
MsaG039678 AT5G41315.1 26.991 226 119 7 42 238 10 218 2.75e-13 72.8
MsaG039678 AT5G41315.1 39.130 69 42 0 349 417 435 503 1.66e-11 67.0
MsaG039678 AT5G41315.3 26.991 226 119 7 42 238 15 223 2.89e-13 72.8
MsaG039678 AT5G41315.3 39.130 69 42 0 349 417 440 508 1.69e-11 67.0
MsaG039678 AT5G41315.2 26.991 226 119 7 42 238 18 226 3.08e-13 72.8
MsaG039678 AT5G41315.2 39.130 69 42 0 349 417 443 511 1.71e-11 67.0
MsaG039678 AT2G22750.1 51.562 64 31 0 341 404 112 175 3.99e-13 70.5
MsaG039678 AT2G22750.4 51.562 64 31 0 341 404 140 203 4.18e-13 70.9
MsaG039678 AT2G22750.2 51.562 64 31 0 341 404 112 175 4.22e-13 70.5
MsaG039678 AT2G22750.3 51.562 64 31 0 341 404 140 203 4.37e-13 70.9
MsaG039678 AT2G22750.5 51.562 64 31 0 341 404 136 199 4.38e-13 70.9
MsaG039678 AT1G12860.2 55.172 58 26 0 353 410 265 322 6.23e-13 71.2
MsaG039678 AT1G12860.1 55.172 58 26 0 353 410 265 322 6.70e-13 71.2
MsaG039678 AT2G22770.1 44.872 78 40 1 349 423 123 200 1.26e-12 69.3
MsaG039678 AT3G26744.6 53.448 58 27 0 353 410 305 362 2.52e-12 69.3
MsaG039678 AT3G26744.1 53.448 58 27 0 353 410 305 362 2.65e-12 69.3
MsaG039678 AT3G26744.4 53.448 58 27 0 353 410 305 362 2.65e-12 69.3
MsaG039678 AT3G26744.2 53.448 58 27 0 353 410 305 362 2.65e-12 69.3
MsaG039678 AT5G10570.1 36.220 127 70 3 299 416 89 213 6.99e-11 63.9

Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATATCCACCCGGTTTC+TGG 0.132043 7:+91849536 MsaT039678.1:CDS
ATGGACAAGGCTTCTCTTCT+TGG 0.203486 7:+91849359 MsaT039678.1:CDS
CCAGAATCATCTTCCACTTT+TGG 0.206725 7:-91848990 None:intergenic
TGAGAATATTTATAAGAAAT+TGG 0.206945 7:+91848581 MsaT039678.1:CDS
TGTTCCTAACATTTCTAAAA+TGG 0.208602 7:+91849340 MsaT039678.1:CDS
GTATGAATCAAGGTCGTTTC+TGG 0.223638 7:+91848743 MsaT039678.1:CDS
CCATAAGCTTGATCTTCTTC+TGG 0.258919 7:-91849409 None:intergenic
AGAGTTTCTTCTATTGATTT+AGG 0.261536 7:+91849161 MsaT039678.1:CDS
TGAGGAAGATTCATGGTTGC+TGG 0.291020 7:+91848541 MsaT039678.1:CDS
TCCCTTTCCTGCTCATTCCT+TGG 0.291476 7:-91848492 None:intergenic
ACCTCTGTCTATTATGTGTT+TGG 0.301401 7:+91848636 MsaT039678.1:CDS
CCAAAAGTGGAAGATGATTC+TGG 0.302301 7:+91848990 MsaT039678.1:CDS
TCTTCTGGAGATCAGTGATA+TGG 0.305181 7:-91849394 None:intergenic
CCAGAAGAAGATCAAGCTTA+TGG 0.312383 7:+91849409 MsaT039678.1:CDS
GATATGGTCAGGGCAACTTT+TGG 0.330665 7:+91848867 MsaT039678.1:CDS
TAAGAAATTGGACAGTGTTT+CGG 0.382697 7:+91848593 MsaT039678.1:CDS
CAGTTGGGTCAAATGATTCC+TGG 0.383826 7:+91849119 MsaT039678.1:CDS
CAGGTTGCCGGTTTGAAATC+CGG 0.384873 7:+91848417 MsaT039678.1:CDS
AAAGGGAGAAAGATGATGTT+AGG 0.390427 7:+91848508 MsaT039678.1:CDS
TGGATAGTCACGTCAAGATT+CGG 0.396746 7:-91848339 None:intergenic
ATGTATGAATTACTTTATCC+TGG 0.397717 7:-91849619 None:intergenic
GTTAGGAACAACAGCTCTTA+AGG 0.401789 7:-91849327 None:intergenic
GCACACTTAAAAGAATTTCC+AGG 0.410186 7:-91848678 None:intergenic
ACTTTAACAATTCCAGAAAC+CGG 0.412032 7:-91849548 None:intergenic
CTTGGCGCAAACCATGCTTA+TGG 0.414623 7:+91849044 MsaT039678.1:CDS
TTTGGGCACGAGTTAAGCTT+GGG 0.421749 7:+91848930 MsaT039678.1:CDS
CTCTTAAGGCGTAAAATCTC+TGG 0.435497 7:-91849313 None:intergenic
GGTTCCTCTCGTCCATTGGC+AGG 0.435606 7:-91849245 None:intergenic
CTTATGGTAATTCTTCCAAC+GGG 0.438633 7:+91849060 MsaT039678.1:CDS
CAGTGGTTCCTCTCGTCCAT+TGG 0.439512 7:-91849249 None:intergenic
AAGGTCGTTTCTGGCTAAAT+CGG 0.439840 7:+91848752 MsaT039678.1:CDS
AGGTTGTGTCACATTGTTAA+CGG 0.439902 7:+91848366 MsaT039678.1:CDS
GAAAGATGATGTTAGGAGGA+AGG 0.440512 7:+91848515 MsaT039678.1:CDS
TATCTTGCAATGGCAATTGC+TGG 0.440816 7:-91849463 None:intergenic
TTTAATTCTCAGTATGGTCC+TGG 0.444163 7:+91848660 MsaT039678.1:CDS
GAAGACTCCTCCTCACCTCT+TGG 0.464557 7:+91849188 MsaT039678.1:CDS
TGAAGAAGACAAGGCTATGT+TGG 0.466385 7:+91848236 MsaT039678.1:CDS
TATTAGTTTCTCCCCAAAAG+TGG 0.469095 7:+91848977 MsaT039678.1:CDS
TTCCCCTCCTTGAGTTCTGA+TGG 0.471316 7:-91849645 None:intergenic
TCTATAACCCCGGCTTTAAG+AGG 0.476638 7:-91848801 None:intergenic
GAGGAAGATTCATGGTTGCT+GGG 0.477098 7:+91848542 MsaT039678.1:CDS
ATCTACCTCTGGACAGGCTA+AGG 0.484847 7:+91848893 MsaT039678.1:CDS
ATACGGTGAGGGACACTGTC+AGG 0.487755 7:+91848455 MsaT039678.1:CDS
GGCCAATGTTTCAACTTCCC+AGG 0.496533 7:+91849601 MsaT039678.1:CDS
CCAAGTTGGTCTTCTGATGC+TGG 0.500304 7:+91848705 MsaT039678.1:CDS
CTTCTGGAGATCAGTGATAT+GGG 0.500322 7:-91849393 None:intergenic
AAGATTCATGGTTGCTGGGG+TGG 0.501380 7:+91848546 MsaT039678.1:CDS
GTCCAAGGAATGAGCAGGAA+AGG 0.501601 7:+91848490 MsaT039678.1:CDS
TCGTTTCTGGCTAAATCGGC+TGG 0.502083 7:+91848756 MsaT039678.1:CDS
GGCTATGTTGGAATCTGTGT+TGG 0.505854 7:+91848248 MsaT039678.1:CDS
GTTTAAATCAGTATGAATCA+AGG 0.505969 7:+91848733 MsaT039678.1:CDS
AAAGCCGGGGTTATAGAGCT+TGG 0.507196 7:+91848807 MsaT039678.1:CDS
TGGAGAATCTACCTCTGGAC+AGG 0.507498 7:+91848887 MsaT039678.1:CDS
TGTTAGAGTTAGCTGCCCCT+TGG 0.517530 7:+91849517 MsaT039678.1:CDS
TCCAAGGAATGAGCAGGAAA+GGG 0.524680 7:+91848491 MsaT039678.1:CDS
GACACTGTCAGGATCCCAAA+GGG 0.526579 7:+91848466 MsaT039678.1:CDS
ATCCTGGGAAGTTGAAACAT+TGG 0.527219 7:-91849603 None:intergenic
CTGCCCCTTGGATATCCACC+CGG 0.528394 7:+91849529 MsaT039678.1:CDS
TTGACGTGACTATCCACAAA+AGG 0.529097 7:+91848346 MsaT039678.1:CDS
GGTTATAGAGCTTGGTTCGA+CGG 0.532928 7:+91848815 MsaT039678.1:CDS
AGAGCTTGGTTCGACGGAGA+TGG 0.536663 7:+91848821 MsaT039678.1:CDS
AGAGAAAGATGGCTGGTGAG+AGG 0.545343 7:+91848202 None:intergenic
TTAAGTGTGCTAAACCAAGT+TGG 0.545549 7:+91848691 MsaT039678.1:CDS
CAAAATCGCGTAATTCCACT+TGG 0.547674 7:-91848391 None:intergenic
TGTATGAATTACTTTATCCT+GGG 0.549481 7:-91849618 None:intergenic
ATAGCCACCGGATTTCAAAC+CGG 0.550635 7:-91848424 None:intergenic
GCCTGAGAAGTAAAATTCCC+AGG 0.550809 7:-91849137 None:intergenic
GCATCAAATTGTAGCTCAAG+AGG 0.553064 7:+91849580 MsaT039678.1:CDS
TTGAAGCGGAGAGGCAAAGA+CGG 0.553502 7:+91849279 MsaT039678.1:CDS
GCTTATGGTAATTCTTCCAA+CGG 0.554315 7:+91849059 MsaT039678.1:CDS
CCAGCATCAGAAGACCAACT+TGG 0.555302 7:-91848705 None:intergenic
AGTTGGGTCAAATGATTCCT+GGG 0.557673 7:+91849120 MsaT039678.1:CDS
TGGAAGAATTACCATAAGCA+TGG 0.563019 7:-91849055 None:intergenic
ACATTCTCCATCAGAACTCA+AGG 0.569500 7:+91849638 MsaT039678.1:CDS
CTTTAACAATTCCAGAAACC+GGG 0.569555 7:-91849547 None:intergenic
GGGAGAAAGATGATGTTAGG+AGG 0.569685 7:+91848511 MsaT039678.1:CDS
TCCGCTTCAACATGATTCAG+TGG 0.571772 7:-91849266 None:intergenic
TGAAGCGGAGAGGCAAAGAC+GGG 0.572704 7:+91849280 MsaT039678.1:CDS
GGTGGCTATGTGTTGAAATA+CGG 0.578846 7:+91848438 MsaT039678.1:CDS
AGGAAGATTCATGGTTGCTG+GGG 0.579241 7:+91848543 MsaT039678.1:CDS
AGAAACCGGGTGGATATCCA+AGG 0.585451 7:-91849534 None:intergenic
TCTTACGAAGTACAAGCGCT+TGG 0.588221 7:+91849026 MsaT039678.1:CDS
TGGGCACGAGTTAAGCTTGG+GGG 0.592030 7:+91848932 MsaT039678.1:CDS
TGAAAATCAATATCTTGCAA+TGG 0.592942 7:-91849473 None:intergenic
CTCCATCAGAACTCAAGGAG+GGG 0.593410 7:+91849643 MsaT039678.1:CDS
GTATAGTAGAGAAAGATGGC+TGG 0.593720 7:+91848195 None:intergenic
TAACATTTCTAAAATGGACA+AGG 0.599447 7:+91849346 MsaT039678.1:CDS
CTCGTCTCCAAGAGGTGAGG+AGG 0.602197 7:-91849195 None:intergenic
AGAGGGAGAAAACCTGCCAA+TGG 0.605353 7:+91849233 MsaT039678.1:CDS
ACCACTGAATCATGTTGAAG+CGG 0.606334 7:+91849265 MsaT039678.1:CDS
GTATTTCAACACATAGCCAC+CGG 0.614051 7:-91848436 None:intergenic
GCTATGTTGGAATCTGTGTT+GGG 0.620643 7:+91848249 MsaT039678.1:CDS
GGACACTGTCAGGATCCCAA+AGG 0.622420 7:+91848465 MsaT039678.1:CDS
TCTCCATCAGAACTCAAGGA+GGG 0.623115 7:+91849642 MsaT039678.1:CDS
CACTGTCAGGATCCCAAAGG+GGG 0.625514 7:+91848468 MsaT039678.1:CDS
TTGTAAGAATGAAGAAGACA+AGG 0.629373 7:+91848227 MsaT039678.1:CDS
GAATCATTTGACCCAACTGA+GGG 0.642194 7:-91849115 None:intergenic
CCGCTCGTCTCCAAGAGGTG+AGG 0.645733 7:-91849198 None:intergenic
CCTCACCTCTTGGAGACGAG+CGG 0.646158 7:+91849198 MsaT039678.1:CDS
TATGGTAATTCTTCCAACGG+GGG 0.650209 7:+91849062 MsaT039678.1:CDS
TGCTACCTTAGCCTGTCCAG+AGG 0.651503 7:-91848898 None:intergenic
TTCTCCATCAGAACTCAAGG+AGG 0.654759 7:+91849641 MsaT039678.1:CDS
AAAACCTGCCAATGGACGAG+AGG 0.654921 7:+91849241 MsaT039678.1:CDS
GAAACCGGGTGGATATCCAA+GGG 0.657964 7:-91849533 None:intergenic
TGAATCATGTTGAAGCGGAG+AGG 0.659736 7:+91849270 MsaT039678.1:CDS
GGAATCATTTGACCCAACTG+AGG 0.660288 7:-91849116 None:intergenic
GGCTTCCGCTCGTCTCCAAG+AGG 0.660984 7:-91849203 None:intergenic
GTTGCCGGTTTGAAATCCGG+TGG 0.661652 7:+91848420 MsaT039678.1:CDS
TTGGGCACGAGTTAAGCTTG+GGG 0.666411 7:+91848931 MsaT039678.1:CDS
ACATTGTTAACGGTTCCAAG+TGG 0.669178 7:+91848376 MsaT039678.1:CDS
CGAACCAAGCTCTATAACCC+CGG 0.673641 7:-91848811 None:intergenic
GAGATGGTGCCTGAAGAGCA+AGG 0.686748 7:+91848837 MsaT039678.1:CDS
ACACTGTCAGGATCCCAAAG+GGG 0.690461 7:+91848467 MsaT039678.1:CDS
TAACAATTCCAGAAACCGGG+TGG 0.692180 7:-91849544 None:intergenic
ACCAAACACATAATAGACAG+AGG 0.698940 7:-91848637 None:intergenic
ATTCGGCGGAACAATAACAT+CGG 0.702866 7:-91848322 None:intergenic
TATGTGTTGAAATACGGTGA+GGG 0.713229 7:+91848444 MsaT039678.1:CDS
TTATGGTAATTCTTCCAACG+GGG 0.725236 7:+91849061 MsaT039678.1:CDS
ATAGTCACGTCAAGATTCGG+CGG 0.725406 7:-91848336 None:intergenic
AAACCGGGTGGATATCCAAG+GGG 0.728834 7:-91849532 None:intergenic
CTATGTGTTGAAATACGGTG+AGG 0.742411 7:+91848443 MsaT039678.1:CDS
GGGTGTAGGAGACAGCAACG+AGG 0.803375 7:+91849082 MsaT039678.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 91848210 91849721 91848210 ID=MsaG039678
Chr7 mRNA 91848210 91849721 91848210 ID=MsaT039678.1;Parent=MsaG039678
Chr7 exon 91848210 91849721 91848210 ID=MsaT039678.1.exon1;Parent=MsaT039678.1
Chr7 CDS 91848210 91849721 91848210 ID=cds.MsaT039678.1;Parent=MsaT039678.1
Gene Sequence

>MsaT039678.1

ATGGCTGGTGAGAGGTTTTGTAAGAATGAAGAAGACAAGGCTATGTTGGAATCTGTGTTGGGTAATGAAGCTTTTGCATTTTTTAGCTCAGCTGTTTCAAAACATGTTTTTTCCGATGTTATTGTTCCGCCGAATCTTGACGTGACTATCCACAAAAGGTTGTGTCACATTGTTAACGGTTCCAAGTGGAATTACGCGATTTTGTGGCAGGTTGCCGGTTTGAAATCCGGTGGCTATGTGTTGAAATACGGTGAGGGACACTGTCAGGATCCCAAAGGGGGTCCAAGGAATGAGCAGGAAAGGGAGAAAGATGATGTTAGGAGGAAGGTTTTGAGGAAGATTCATGGTTGCTGGGGTGGATCTAGCTCAGTTGAGAATATTTATAAGAAATTGGACAGTGTTTCGGATTTGTATATGCTTTACTTGACCTCTGTCTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAATTCTTTTAAGTGTGCTAAACCAAGTTGGTCTTCTGATGCTGGTAGTTGTTTAAATCAGTATGAATCAAGGTCGTTTCTGGCTAAATCGGCTGGCTTTCAAAGTGTTGCTTTTGTACCTCTTAAAGCCGGGGTTATAGAGCTTGGTTCGACGGAGATGGTGCCTGAAGAGCAAGGTTTTTTGGATATGGTCAGGGCAACTTTTGGAGAATCTACCTCTGGACAGGCTAAGGTAGCACCAAAGATTTTTGGGCACGAGTTAAGCTTGGGGGATACAAAATCTCAGTCGATAACTATTAGTTTCTCCCCAAAAGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTACGAAGTACAAGCGCTTGGCGCAAACCATGCTTATGGTAATTCTTCCAACGGGGGTGTAGGAGACAGCAACGAGGCAAAAAAGTACCCTCAGTTGGGTCAAATGATTCCTGGGAATTTTACTTCTCAGGCAAGAGTTTCTTCTATTGATTTAGGTAATGAAGACTCCTCCTCACCTCTTGGAGACGAGCGGAAGCCTAGAAAAAGAGGGAGAAAACCTGCCAATGGACGAGAGGAACCACTGAATCATGTTGAAGCGGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTACGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTTCTTGGTGATGCTATTACCCATATCACTGATCTCCAGAAGAAGATCAAGCTTATGGAAACTGAAAAAAACATGGCTGACAATAAGGGCCAGCAATTGCCATTGCAAGATATTGATTTTCAGGCTCGACAGGATGATGCAGTTGTTAGAGTTAGCTGCCCCTTGGATATCCACCCGGTTTCTGGAATTGTTAAAGTGTTCAGAGAGCATCAAATTGTAGCTCAAGAGGCCAATGTTTCAACTTCCCAGGATAAAGTAATTCATACATTCTCCATCAGAACTCAAGGAGGGGAAGCAGCTGCTATACAGTTGAAAGAAAAGCTTGAAGCATCTTTAGCCAAAAATTAA
Protein sequence

>MsaT039678.1

MAGERFCKNEEDKAMLESVLGNEAFAFFSSAVSKHVFSDVIVPPNLDVTIHKRLCHIVNGSKWNYAILWQVAGLKSGGYVLKYGEGHCQDPKGGPRNEQEREKDDVRRKVLRKIHGCWGGSSSVENIYKKLDSVSDLYMLYLTSVYYVFGFNSQYGPGNSFKCAKPSWSSDAGSCLNQYESRSFLAKSAGFQSVAFVPLKAGVIELGSTEMVPEEQGFLDMVRATFGESTSGQAKVAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNEAKKYPQLGQMIPGNFTSQARVSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLMETEKNMADNKGQQLPLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIVAQEANVSTSQDKVIHTFSIRTQGGEAAAIQLKEKLEASLAKN*