AlfalfaGEDB | MsaG039715

M. sativa ssp. caerulea / MsaG039715

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039715	XP_003589401.2	89.516	124	12	1	1	124	1	123	8.82e-73	223

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039715	sp\|Q9SRH9\|SNL1_ARATH	33.766	154	46	2	17	114	87	240	2.94e-17	79.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039715	tr\|G7I6H5\|G7I6H5_MEDTR	89.516	124	12	1	1	124	1	123	4.21e-73	223

TFs/TRs:

Gene ID	Type	Classification
MsaG039715	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003083	MsaG039715	0.830664	4.654096e-55	1.372705e-52
MsaG010095	MsaG039715	0.835919	2.314827e-56	7.970302e-54
MsaG016724	MsaG039715	0.805173	2.563901e-49	3.902767e-47
MsaG030928	MsaG039715	0.813203	4.964497e-51	9.173479e-49
MsaG039613	MsaG039715	0.802779	8.022307e-49	1.155252e-46
MsaG039701	MsaG039715	0.822271	4.561860e-53	1.065631e-50
MsaG039702	MsaG039715	0.803466	5.791383e-49	8.473371e-47
MsaG039705	MsaG039715	0.894025	8.127835e-75	2.969277e-71
MsaG039708	MsaG039715	0.823765	2.053512e-53	4.994964e-51
MsaG039711	MsaG039715	0.823436	2.449752e-53	5.905468e-51
MsaG039715	MsaG039722	0.806691	1.233613e-49	1.945999e-47
MsaG039715	MsaG039724	0.813987	3.344281e-51	6.302187e-49
MsaG039715	MsaG039643	0.821763	5.975657e-53	1.377036e-50
MsaG039715	MsaG039645	0.817529	5.474435e-52	1.128858e-49
MsaG039715	MsaG039647	0.802262	1.023998e-48	1.457281e-46
MsaG039715	MsaG039654	0.801640	1.372341e-48	1.925566e-46
MsaG039715	MsaG039739	0.813190	4.996486e-51	9.229691e-49
MsaG039715	MsaG040740	0.807576	8.029088e-50	1.293363e-47
MsaG039715	MsaG043665	0.811558	1.131173e-50	2.006688e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039715	MtrunA17_Chr1g0156171	89.516	124	12	1	1	124	1	123	8.12e-77	223
MsaG039715	MtrunA17_Chr5g0415031	58.824	153	8	2	17	114	73	225	1.05e-46	160
MsaG039715	MtrunA17_Chr8g0364231	40.909	154	35	3	17	114	72	225	1.32e-23	94.7
MsaG039715	MtrunA17_Chr6g0452001	35.669	157	42	5	17	114	93	249	1.18e-18	80.5
MsaG039715	MtrunA17_Chr6g0452021	64.000	50	17	1	17	66	73	121	1.57e-14	68.6
MsaG039715	MtrunA17_Chr1g0206781	54.167	48	22	0	17	64	41	88	5.14e-14	63.5
MsaG039715	MtrunA17_Chr1g0206771	60.526	38	15	0	17	54	46	83	8.16e-12	59.3
MsaG039715	MtrunA17_Chr2g0328701	35.000	80	52	0	2	81	41	120	1.20e-11	57.8
MsaG039715	MtrunA17_Chr3g0077861	60.870	46	18	0	11	56	115	160	1.27e-11	58.5
MsaG039715	MtrunA17_Chr3g0077911	60.870	46	18	0	11	56	115	160	4.39e-11	57.0
MsaG039715	MtrunA17_Chr4g0075971	41.935	62	36	0	20	81	42	103	5.36e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039715	AT3G01320.1	33.766	154	46	2	17	114	87	240	2.99e-18	79.7
MsaG039715	AT3G01320.2	33.766	154	46	2	17	114	87	240	3.10e-18	79.7
MsaG039715	AT1G59890.1	33.333	153	47	2	17	114	75	227	1.09e-17	78.2
MsaG039715	AT1G59890.2	33.333	153	47	2	17	114	75	227	1.10e-17	78.2
MsaG039715	AT1G59890.4	33.333	153	47	2	17	114	75	227	1.15e-17	78.2
MsaG039715	AT1G59890.3	33.333	153	47	2	17	114	75	227	1.16e-17	78.2
MsaG039715	AT1G70060.2	36.129	155	41	5	17	114	44	197	4.21e-17	76.3
MsaG039715	AT1G70060.1	36.129	155	41	5	17	114	44	197	4.21e-17	76.3
MsaG039715	AT1G24190.3	42.202	109	22	1	17	84	44	152	5.32e-17	76.3
MsaG039715	AT1G24190.1	42.202	109	22	1	17	84	44	152	5.47e-17	76.3
MsaG039715	AT1G24190.2	42.202	109	22	1	17	84	44	152	5.58e-17	76.3
MsaG039715	AT5G15020.2	35.714	154	42	5	17	114	82	234	8.64e-17	75.5
MsaG039715	AT5G15020.1	35.714	154	42	5	17	114	82	234	8.90e-17	75.5
MsaG039715	AT1G10450.3	62.500	48	18	0	17	64	114	161	2.10e-15	71.6
MsaG039715	AT1G10450.2	62.500	48	18	0	17	64	63	110	2.20e-15	71.6
MsaG039715	AT1G10450.1	62.500	48	18	0	17	64	63	110	2.20e-15	71.6
MsaG039715	AT4G12020.1	58.140	43	18	0	21	63	341	383	7.20e-11	58.5
MsaG039715	AT4G12020.9	58.140	43	18	0	21	63	341	383	7.20e-11	58.5
MsaG039715	AT4G12020.4	58.140	43	18	0	21	63	341	383	7.22e-11	58.5
MsaG039715	AT4G12020.2	58.140	43	18	0	21	63	341	383	7.43e-11	58.5
MsaG039715	AT4G12020.7	58.140	43	18	0	21	63	341	383	7.56e-11	58.5
MsaG039715	AT4G12020.6	58.140	43	18	0	21	63	341	383	7.63e-11	58.5
MsaG039715	AT4G12020.8	58.140	43	18	0	21	63	341	383	7.63e-11	58.5
MsaG039715	AT4G12020.10	58.140	43	18	0	21	63	341	383	7.65e-11	58.5
MsaG039715	AT4G12020.3	58.140	43	18	0	21	63	341	383	7.65e-11	58.5
MsaG039715	AT4G12020.5	58.140	43	18	0	21	63	274	316	7.86e-11	58.5
MsaG039715	AT4G12020.11	58.140	43	18	0	21	63	341	383	8.35e-11	58.5

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCATGGCCCTTTGGCAAAA+AGG	0.248205	7:-92169863	None:intergenic
ATGCAGCATCCGGGTGGTTT+TGG	0.280374	7:-92170078	None:intergenic
ACTTCGATCTCTTTCTCGTT+TGG	0.311785	7:-92169555	None:intergenic
GCATGAGTAGATGCAGCATC+CGG	0.446564	7:-92170088	None:intergenic
AGGGTAATCTCATGGCCCTT+TGG	0.451315	7:-92169871	None:intergenic
CACATACCTCTTTGTAGACC+AGG	0.459268	7:-92169933	None:intergenic
TAGACCAGGGTGTTAGACTT+TGG	0.465686	7:-92169919	None:intergenic
GGTCATAGAGACTTGATCTT+CGG	0.474274	7:+92169832	MsaT039715.1:CDS
ACGGCGAGTGCATGTTGAAA+AGG	0.478594	7:+92170162	MsaT039715.1:CDS
AGGGTGTTAGACTTTGGTTG+AGG	0.550511	7:-92169913	None:intergenic
TTGCTCATCCTCAGACGAAA+GGG	0.552798	7:-92169890	None:intergenic
TGAGATTACCCTTTCGTCTG+AGG	0.555293	7:+92169882	MsaT039715.1:CDS
GCATGCCTTTGACTACAGAA+AGG	0.565598	7:-92170206	None:intergenic
CATGCCTTTGACTACAGAAA+GGG	0.567694	7:-92170205	None:intergenic
ACATGCACTCGCCGTAGTGT+TGG	0.571378	7:-92170154	None:intergenic
CATGAGTAGATGCAGCATCC+GGG	0.581255	7:-92170087	None:intergenic
CAGACGAAAGGGTAATCTCA+TGG	0.592774	7:-92169879	None:intergenic
GTTGCTCATCCTCAGACGAA+AGG	0.601293	7:-92169891	None:intergenic
TGCACTCTACCAAAACCACC+CGG	0.633017	7:+92170069	MsaT039715.1:CDS
ATTTGTAGAGTTGATACTGA+TGG	0.633224	7:+92169778	MsaT039715.1:intron
AGAGCTCCTATCACAAAACA+TGG	0.657685	7:-92170125	None:intergenic
TAACACCCTGGTCTACAAAG+AGG	0.665433	7:+92169927	MsaT039715.1:CDS
GCTCTGCAATGCCAACACTA+CGG	0.674753	7:+92170143	MsaT039715.1:CDS
TCAACCAAAGTCTAACACCC+TGG	0.678062	7:+92169915	MsaT039715.1:CDS
ACATACCTCTTTGTAGACCA+GGG	0.680303	7:-92169932	None:intergenic
TGGTGTCATTGAAAGAGTGA+AGG	0.685356	7:+92169798	MsaT039715.1:CDS
GAGTAGATGCAGCATCCGGG+TGG	0.688313	7:-92170084	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92169544	92170216	92169544	ID=MsaG039715
Chr7	mRNA	92169544	92170216	92169544	ID=MsaT039715.1;Parent=MsaG039715
Chr7	exon	92169544	92169602	92169544	ID=MsaT039715.1.exon1;Parent=MsaT039715.1
Chr7	CDS	92169544	92169602	92169544	ID=cds.MsaT039715.1;Parent=MsaT039715.1
Chr7	exon	92169786	92169948	92169786	ID=MsaT039715.1.exon2;Parent=MsaT039715.1
Chr7	CDS	92169786	92169948	92169786	ID=cds.MsaT039715.1;Parent=MsaT039715.1
Chr7	exon	92170064	92170216	92170064	ID=MsaT039715.1.exon3;Parent=MsaT039715.1
Chr7	CDS	92170064	92170216	92170064	ID=cds.MsaT039715.1;Parent=MsaT039715.1

Gene Sequence	>MsaT039715.1 ATGTGCGTGATCCAAACGAGAAAGAGATCGAAGTTGCCGTCGAAAAGAAAAACAGTAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCATAGAGACTTGATCTTCGGATTTAACACCTTTTTGCCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAGTCTAACACCCTGGTCTACAAAGAGGTTGCTGCACTCTACCAAAACCACCCGGATGCTGCATCTACTCATGCTTTTGCTCAGAATTCCATGTTTTGTGATAGGAGCTCTGCAATGCCAACACTACGGCGAGTGCATGTTGAAAAGGTTTGTCTTCAGTTCTTATGTCCCTTTCTGTAG
Protein sequence	>MsaT039715.1 MCVIQTRKRSKLPSKRKTVRVDTDGVIERVKELFRGHRDLIFGFNTFLPKGHEITLSSEDEQPQPKSNTLVYKEVAALYQNHPDAASTHAFAQNSMFCDRSSAMPTLRRVHVEKVCLQFLCPFL*