AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039732


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039732 MtrunA17_Chr7g0261911 98.773 489 6 0 1 489 1 489 0.0 996
MsaG039732 MtrunA17_Chr1g0190301 44.656 421 177 11 72 489 21 388 1.53e-96 296
MsaG039732 MtrunA17_Chr7g0274471 47.439 371 161 10 72 437 49 390 1.25e-90 283
MsaG039732 MtrunA17_Chr7g0258551 53.125 160 74 1 257 416 207 365 9.31e-56 191
MsaG039732 MtrunA17_Chr1g0175091 59.441 143 56 2 252 394 248 388 1.17e-54 189
MsaG039732 MtrunA17_Chr2g0291021 64.493 138 46 2 262 396 49 186 8.87e-52 178
MsaG039732 MtrunA17_Chr7g0254981 54.717 159 63 3 241 395 33 186 1.28e-49 171
MsaG039732 MtrunA17_Chr6g0461641 52.667 150 53 3 258 390 38 186 2.07e-44 160
MsaG039732 MtrunA17_Chr2g0321461 48.765 162 63 3 249 390 32 193 3.79e-40 149
MsaG039732 MtrunA17_Chr8g0356501 39.130 207 107 6 262 455 37 237 3.97e-37 139
MsaG039732 MtrunA17_Chr5g0409731 50.355 141 58 2 262 390 25 165 5.83e-37 137
MsaG039732 MtrunA17_Chr5g0417521 43.537 147 67 2 258 390 11 155 9.25e-37 139
MsaG039732 MtrunA17_Chr4g0042451 46.575 146 63 3 258 390 13 156 5.06e-36 136
MsaG039732 MtrunA17_Chr1g0175071 44.966 149 76 2 248 391 158 305 2.59e-34 131
MsaG039732 MtrunA17_Chr7g0242521 50.000 140 56 3 253 384 4 137 7.45e-34 127
MsaG039732 MtrunA17_Chr2g0290991 41.615 161 75 3 258 403 35 191 3.34e-33 128
MsaG039732 MtrunA17_Chr2g0310011 47.692 130 59 2 262 385 35 161 5.90e-33 128
MsaG039732 MtrunA17_Chr1g0197171 33.466 251 139 8 246 479 28 267 2.77e-31 122
MsaG039732 MtrunA17_Chr1g0175081 53.333 75 35 0 252 326 12 86 4.20e-25 99.4
MsaG039732 MtrunA17_Chr7g0258531 38.509 161 91 3 229 387 185 339 6.83e-25 105
MsaG039732 MtrunA17_Chr1g0162931 67.857 56 18 0 263 318 19 74 1.26e-19 89.0
MsaG039732 MtrunA17_Chr1g0210911 66.071 56 19 0 263 318 23 78 2.48e-19 89.0
MsaG039732 MtrunA17_Chr2g0288601 61.290 62 24 0 251 312 60 121 3.36e-19 83.6
MsaG039732 MtrunA17_Chr7g0243081 64.286 56 20 0 263 318 72 127 7.75e-19 87.8
MsaG039732 MtrunA17_Chr2g0320231 67.857 56 18 0 263 318 98 153 8.35e-19 88.2
MsaG039732 MtrunA17_Chr1g0154261 62.121 66 25 0 263 328 127 192 1.05e-18 86.7
MsaG039732 MtrunA17_Chr8g0379121 66.071 56 19 0 263 318 112 167 1.05e-18 88.2
MsaG039732 MtrunA17_Chr8g0366281 54.430 79 34 1 250 326 161 239 1.14e-18 87.4
MsaG039732 MtrunA17_Chr3g0095611 56.140 57 25 0 262 318 19 75 2.33e-18 83.6
MsaG039732 MtrunA17_Chr6g0479431 67.857 56 18 0 263 318 203 258 5.64e-18 85.5
MsaG039732 MtrunA17_Chr3g0109981 59.420 69 26 1 263 329 275 343 1.13e-17 85.5
MsaG039732 MtrunA17_Chr5g0410741 61.905 63 24 0 256 318 213 275 1.68e-17 84.3
MsaG039732 MtrunA17_Chr2g0283951 58.209 67 27 1 263 329 90 155 3.87e-17 83.2
MsaG039732 MtrunA17_Chr4g0062921 52.778 72 34 0 253 324 226 297 9.72e-15 76.3
MsaG039732 MtrunA17_Chr2g0304841 58.621 58 23 1 258 315 209 265 3.85e-14 75.1
MsaG039732 MtrunA17_Chr4g0009901 50.000 70 34 1 262 331 168 236 5.62e-14 72.4
MsaG039732 MtrunA17_Chr4g0045361 53.846 65 30 0 262 326 274 338 1.60e-13 72.4
MsaG039732 MtrunA17_Chr4g0009981 46.154 91 46 3 254 342 108 197 1.96e-13 70.5
MsaG039732 MtrunA17_Chr5g0422621 48.718 78 40 0 238 315 174 251 2.34e-13 71.6
MsaG039732 MtrunA17_Chr7g0275401 59.259 54 21 1 262 315 192 244 5.55e-13 69.7
MsaG039732 MtrunA17_Chr1g0198601 52.381 63 30 0 262 324 211 273 5.60e-13 70.5
MsaG039732 MtrunA17_Chr1g0161431 53.968 63 28 1 258 320 196 257 9.91e-13 70.5
MsaG039732 MtrunA17_Chr4g0009851 44.565 92 48 3 253 342 160 250 1.02e-12 68.9
MsaG039732 MtrunA17_Chr4g0067981 44.444 99 40 4 258 345 211 305 1.68e-12 69.7
MsaG039732 MtrunA17_Chr3g0137101 53.968 63 28 1 258 320 194 255 2.35e-12 69.3
MsaG039732 MtrunA17_Chr1g0149841 51.471 68 32 1 258 325 187 253 2.40e-12 68.9
MsaG039732 MtrunA17_Chr4g0031961 39.080 87 52 1 229 315 98 183 3.00e-12 67.4
MsaG039732 MtrunA17_Chr5g0402631 52.239 67 31 1 259 324 211 277 4.09e-12 67.4
MsaG039732 MtrunA17_Chr4g0074401 51.562 64 30 1 258 321 199 261 6.87e-12 67.8
MsaG039732 MtrunA17_Chr4g0074411 46.835 79 40 2 258 336 197 273 7.02e-12 67.8
MsaG039732 MtrunA17_Chr7g0255711 55.556 54 23 1 262 315 91 143 8.96e-12 65.9
MsaG039732 MtrunA17_Chr4g0054981 59.259 54 21 1 262 315 310 362 1.02e-11 67.0
MsaG039732 MtrunA17_Chr5g0400241 36.522 115 58 3 214 315 251 363 1.34e-11 66.6
MsaG039732 MtrunA17_Chr2g0294911 49.206 63 31 1 258 320 207 268 1.70e-11 66.6
MsaG039732 MtrunA17_Chr1g0149831 50.000 68 30 1 258 325 124 187 1.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039732 AT4G28610.1 47.661 449 166 18 1 440 1 389 1.73e-109 331
MsaG039732 AT5G29000.2 46.851 397 174 10 18 404 5 374 5.09e-95 294
MsaG039732 AT5G29000.1 50.000 348 138 9 67 404 10 331 4.09e-93 288
MsaG039732 AT5G29000.3 50.000 348 138 9 67 404 10 331 4.09e-93 288
MsaG039732 AT3G04450.4 49.851 335 144 11 67 393 14 332 6.00e-84 265
MsaG039732 AT3G04450.2 49.851 335 144 11 67 393 14 332 6.00e-84 265
MsaG039732 AT3G04450.1 49.851 335 144 11 67 393 54 372 2.16e-83 265
MsaG039732 AT2G20400.1 48.289 263 114 6 139 391 110 360 9.68e-61 204
MsaG039732 AT2G20400.2 48.106 264 114 7 139 391 110 361 5.76e-59 199
MsaG039732 AT5G29000.4 40.625 320 158 8 18 330 5 299 5.88e-55 186
MsaG039732 AT5G06800.1 56.173 162 70 1 232 393 162 322 4.30e-54 186
MsaG039732 AT2G01060.1 64.085 142 49 2 257 396 10 151 6.76e-53 180
MsaG039732 AT5G06800.2 54.491 167 70 2 232 393 162 327 6.74e-52 181
MsaG039732 AT3G13040.3 54.348 184 72 4 251 429 233 409 1.71e-49 176
MsaG039732 AT3G13040.1 54.348 184 72 4 251 429 233 409 1.71e-49 176
MsaG039732 AT3G13040.2 54.348 184 72 4 251 429 233 409 1.71e-49 176
MsaG039732 AT3G04450.3 42.182 275 134 11 67 332 54 312 2.28e-46 164
MsaG039732 AT3G24120.1 54.483 145 54 3 262 394 41 185 9.68e-45 159
MsaG039732 AT4G13640.1 53.793 145 55 2 262 394 37 181 6.63e-44 157
MsaG039732 AT3G24120.2 53.378 148 54 4 262 394 41 188 1.19e-42 153
MsaG039732 AT4G13640.2 52.703 148 55 3 262 394 37 184 7.60e-42 151
MsaG039732 AT3G04030.3 50.676 148 58 2 258 390 41 188 6.85e-41 151
MsaG039732 AT5G18240.1 44.000 200 83 5 240 415 26 220 3.26e-40 149
MsaG039732 AT5G18240.4 44.000 200 83 5 240 415 26 220 3.26e-40 149
MsaG039732 AT1G69580.1 47.799 159 62 3 251 390 23 179 5.41e-39 145
MsaG039732 AT1G69580.2 46.875 160 63 3 251 390 23 180 1.55e-38 143
MsaG039732 AT3G04030.2 50.000 148 58 3 258 390 41 187 2.28e-38 144
MsaG039732 AT1G79430.2 46.763 139 65 2 262 394 34 169 1.35e-37 141
MsaG039732 AT5G18240.5 43.500 200 82 6 240 415 26 218 3.40e-37 141
MsaG039732 AT3G04030.1 47.973 148 56 3 258 390 41 182 2.65e-35 136
MsaG039732 AT5G18240.2 42.000 200 81 6 240 415 26 214 1.45e-34 134
MsaG039732 AT5G18240.3 42.000 200 81 6 240 415 26 214 1.45e-34 134
MsaG039732 AT2G01060.2 63.725 102 35 2 297 396 1 102 7.51e-33 125
MsaG039732 AT5G45580.1 43.709 151 67 4 262 394 7 157 2.84e-32 124
MsaG039732 AT5G45580.2 43.709 151 67 4 262 394 23 173 4.24e-32 124
MsaG039732 AT3G12730.1 42.553 141 73 2 262 394 23 163 1.45e-30 119
MsaG039732 AT5G06800.3 53.125 96 45 0 232 327 162 257 1.80e-26 108
MsaG039732 AT3G04030.5 45.536 112 46 2 294 390 1 112 1.42e-20 92.8
MsaG039732 AT2G42660.1 59.091 66 27 0 263 328 51 116 1.72e-20 91.3
MsaG039732 AT1G79430.1 41.121 107 54 3 294 394 1 104 2.42e-20 91.7
MsaG039732 AT1G14600.1 69.643 56 17 0 263 318 24 79 7.91e-20 89.4
MsaG039732 AT5G42630.2 45.455 110 47 2 227 329 69 172 3.27e-19 87.0
MsaG039732 AT2G02060.2 71.698 53 15 0 263 315 30 82 3.99e-19 87.4
MsaG039732 AT2G02060.1 71.698 53 15 0 263 315 30 82 3.99e-19 87.4
MsaG039732 AT5G42630.1 45.455 110 47 2 227 329 69 172 6.22e-19 87.4
MsaG039732 AT4G04605.1 56.522 69 30 0 263 331 15 83 9.22e-19 85.5
MsaG039732 AT4G17695.1 55.844 77 32 1 252 326 154 230 1.12e-18 87.4
MsaG039732 AT2G40260.1 66.071 56 19 0 263 318 83 138 2.05e-18 87.8
MsaG039732 AT1G32240.2 43.925 107 54 1 223 329 180 280 2.30e-18 87.0
MsaG039732 AT5G16560.1 60.274 73 26 2 263 332 220 292 3.13e-18 87.0
MsaG039732 AT1G32240.1 43.925 107 54 1 223 329 180 280 3.13e-18 87.0
MsaG039732 AT2G38300.1 54.286 70 32 0 263 332 55 124 3.93e-18 85.9
MsaG039732 AT2G06020.1 54.386 57 26 0 262 318 86 142 1.40e-15 77.8
MsaG039732 AT3G04030.4 41.964 112 44 3 294 390 1 106 2.12e-15 77.4
MsaG039732 AT2G03500.1 52.778 72 34 0 253 324 224 295 5.72e-15 77.4
MsaG039732 AT4G04580.1 52.308 65 30 1 263 327 15 78 1.63e-14 72.0
MsaG039732 AT5G18240.6 36.986 146 60 5 294 415 1 138 1.76e-14 74.7
MsaG039732 AT1G25550.1 60.000 60 24 0 262 321 209 268 3.40e-14 74.3
MsaG039732 AT4G37180.1 55.385 65 28 1 252 315 199 263 3.24e-13 71.2
MsaG039732 AT4G37180.2 55.385 65 28 1 252 315 206 270 3.62e-13 71.2
MsaG039732 AT3G12730.2 34.862 109 63 2 294 394 1 109 4.28e-13 68.2
MsaG039732 AT1G68670.1 55.556 63 28 0 262 324 215 277 4.32e-13 70.9
MsaG039732 AT3G62670.1 56.452 62 23 1 258 315 207 268 4.89e-13 71.2
MsaG039732 AT5G59570.2 47.692 65 33 1 251 315 130 193 5.89e-13 70.1
MsaG039732 AT5G59570.1 47.692 65 33 1 251 315 130 193 5.89e-13 70.1
MsaG039732 AT3G16857.3 59.322 59 23 1 262 320 167 224 6.91e-13 71.6
MsaG039732 AT3G16857.2 59.322 59 23 1 262 320 237 294 8.27e-13 71.2
MsaG039732 AT3G16857.1 59.322 59 23 1 262 320 237 294 8.62e-13 71.2
MsaG039732 AT5G44190.1 50.769 65 31 1 254 318 139 202 1.23e-12 69.7
MsaG039732 AT5G44190.2 50.769 65 31 1 254 318 139 202 1.41e-12 69.3
MsaG039732 AT2G40970.1 45.455 77 37 2 244 320 91 162 1.97e-12 67.8
MsaG039732 AT1G49560.1 49.315 73 37 0 252 324 182 254 2.08e-12 68.6
MsaG039732 AT5G05090.1 55.556 54 23 1 262 315 81 133 3.34e-12 67.4
MsaG039732 AT4G04555.1 51.786 56 27 0 263 318 15 70 3.43e-12 63.5
MsaG039732 AT3G10760.1 55.556 54 23 1 262 315 105 157 3.62e-12 68.2
MsaG039732 AT3G46640.2 55.556 54 23 1 262 315 144 196 4.54e-12 67.4
MsaG039732 AT3G46640.1 55.556 54 23 1 262 315 144 196 4.54e-12 67.4
MsaG039732 AT3G46640.3 55.556 54 23 1 262 315 144 196 5.24e-12 67.4
MsaG039732 AT5G58080.1 59.259 54 21 1 262 315 194 246 6.69e-12 68.2
MsaG039732 AT3G25790.1 56.364 55 24 0 267 321 201 255 7.13e-12 67.4
MsaG039732 AT2G20570.1 53.125 64 29 1 255 318 146 208 1.64e-11 66.6
MsaG039732 AT1G25550.2 60.784 51 20 0 262 312 209 259 2.46e-11 64.7
MsaG039732 AT4G37180.3 53.226 62 28 1 252 312 199 260 4.91e-11 63.9
MsaG039732 AT1G13300.1 49.206 63 32 0 262 324 181 243 5.85e-11 64.3
MsaG039732 AT1G49190.1 52.632 57 24 1 262 315 215 271 6.51e-11 64.7

Find 121 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGTTCATGCAGCCGTTTC+TGG 0.141434 7:-92406700 None:intergenic
ACGATACTTTGACTTCTAAT+TGG 0.176459 7:+92403830 MsaT039732.1:CDS
ATCTGGTGTTGAGCCATTTA+AGG 0.223957 7:+92408464 MsaT039732.1:CDS
CTTAGAAGCTTGTTGAGATT+TGG 0.249037 7:-92408667 None:intergenic
TGACTTGCAATGGTCCATTT+TGG 0.253593 7:-92408571 None:intergenic
TTACCGTATTCTTCAAATAA+TGG 0.301607 7:+92403598 MsaT039732.1:CDS
TCTGGGGTATGTCTCCTCTA+AGG 0.303816 7:-92403356 None:intergenic
CAAATCTCAACAAGCTTCTA+AGG 0.304177 7:+92408668 MsaT039732.1:CDS
CGGCTGCGAATCAGAAAATC+TGG 0.314389 7:-92403374 None:intergenic
GCTGATGATGATGCCTTAAA+TGG 0.316466 7:-92408477 None:intergenic
CATCTGTCCTTTGACGCTTA+GGG 0.327736 7:-92408728 None:intergenic
TCATCTGTCCTTTGACGCTT+AGG 0.327888 7:-92408729 None:intergenic
CAACAACTTCCAGCTCTATC+TGG 0.330349 7:+92404055 MsaT039732.1:CDS
TCATGTTAAAAGCCACTTAC+AGG 0.337959 7:+92404348 MsaT039732.1:CDS
TCCCTATGTTATTCAGTTGC+TGG 0.340671 7:-92403291 None:intergenic
TGAATTGGAAGCATCCAAAA+TGG 0.350129 7:+92408557 MsaT039732.1:CDS
GAGCGGTGCCTGCAATATTA+TGG 0.356005 7:+92403744 MsaT039732.1:CDS
CTCGGTGGCCATAATATTGC+AGG 0.370683 7:-92403752 None:intergenic
TGTCCATCCAACACCCTTAG+AGG 0.370709 7:+92403342 MsaT039732.1:CDS
TTGTGAAGATGACTTTGAAA+TGG 0.383554 7:-92404002 None:intergenic
ATGAGCTTCAGCACACCCTT+AGG 0.390446 7:-92404301 None:intergenic
TGAGCTTCACGAGGCATTTG+TGG 0.391511 7:+92404153 MsaT039732.1:CDS
CTGAATAACATAGGGATGTC+TGG 0.398764 7:+92403298 MsaT039732.1:CDS
TGGAAGTTGTTGGTGACCTT+GGG 0.401493 7:-92404044 None:intergenic
AAAATGGACCATTGCAAGTC+AGG 0.405684 7:+92408573 MsaT039732.1:CDS
TAGAGACGAAATATCTTCAA+TGG 0.411601 7:-92405253 None:intergenic
TGCAGGCACCGCTCTCTACT+TGG 0.420513 7:-92403735 None:intergenic
ATTGCTTCTCAAACATCATC+TGG 0.427142 7:-92408437 None:intergenic
TTTGAGAAGCAATGCAAATC+TGG 0.429240 7:+92408447 MsaT039732.1:CDS
CCAATGGAAACAGTGCTTCA+TGG 0.436394 7:+92403653 MsaT039732.1:CDS
CAGATAGAGCTGGAAGTTGT+TGG 0.437915 7:-92404054 None:intergenic
TTTGGTAGGAGAGTCTTTCA+TGG 0.441273 7:-92408532 None:intergenic
GTCATTGAGTAACATGGCTT+CGG 0.445080 7:+92403570 MsaT039732.1:CDS
TGAGCTTCAGCACACCCTTA+GGG 0.446411 7:-92404300 None:intergenic
AGTCCATCGCATTCGTGGCT+TGG 0.450820 7:-92404128 None:intergenic
GGTCCATTATTTGAAGAATA+CGG 0.453015 7:-92403601 None:intergenic
AGAAGCTTGTTGAGATTTGG+AGG 0.454821 7:-92408664 None:intergenic
AGAGACGAAATATCTTCAAT+GGG 0.455908 7:-92405252 None:intergenic
TTTGACGCTTAGGGGCTTGA+GGG 0.457431 7:-92408719 None:intergenic
GTTGTTGGTGACCTTGGGAT+TGG 0.458647 7:-92404039 None:intergenic
TGCGAATAGAAGAGCAAGGC+AGG 0.459388 7:+92408409 MsaT039732.1:CDS
CTGGAAGTTGTTGGTGACCT+TGG 0.461134 7:-92404045 None:intergenic
CCATGAAGCACTGTTTCCAT+TGG 0.464624 7:-92403653 None:intergenic
ACAAATGCCTCGTGAAGCTC+AGG 0.468546 7:-92404151 None:intergenic
TATCGTCATCACTGATTAGC+TGG 0.473545 7:-92403813 None:intergenic
CCCTATGTTATTCAGTTGCT+GGG 0.475601 7:-92403290 None:intergenic
TACTTGGTTATTATCAATTG+AGG 0.476017 7:-92403719 None:intergenic
GCAGAATTTGCTGAGGAAGA+TGG 0.480337 7:-92404100 None:intergenic
CTTTGACGCTTAGGGGCTTG+AGG 0.481559 7:-92408720 None:intergenic
TATGTCTCCTCTAAGGGTGT+TGG 0.482313 7:-92403349 None:intergenic
TGAAGATCGTTAGAATATCC+AGG 0.483197 7:-92403490 None:intergenic
GTACTACCATTAGCTTGATC+AGG 0.485584 7:-92408597 None:intergenic
TGATTCGCAGCCGACTTATG+TGG 0.488057 7:+92403384 MsaT039732.1:CDS
TTATTTGAAGAATACGGTAA+TGG 0.489486 7:-92403595 None:intergenic
TTCTAAGCGAAATGATTGGC+AGG 0.490400 7:+92403780 MsaT039732.1:CDS
TCAGCCATTGAAAATCCATC+TGG 0.492315 7:+92408495 MsaT039732.1:CDS
TAATGTGTTGATGTTGTAGA+AGG 0.498623 7:-92403628 None:intergenic
TCAGGAGTCCATCGCATTCG+TGG 0.504175 7:-92404133 None:intergenic
TCAGGACCTGATCAAGCTAA+TGG 0.505420 7:+92408591 MsaT039732.1:CDS
TCAACGAAATGCAGAAATAC+AGG 0.509552 7:+92404436 MsaT039732.1:intron
AGAAATCAAGAAAACTAGGC+AGG 0.510355 7:-92403687 None:intergenic
GATCTTTCAATTGAGAAAGC+AGG 0.512244 7:-92403262 None:intergenic
GCTGGAAGCAGTTGAGAAGC+TGG 0.513069 7:+92408638 MsaT039732.1:CDS
CTGAAGCTCATGAAAGTTGA+AGG 0.515183 7:+92404313 MsaT039732.1:CDS
CACGGTTGAGGAAAGCTCGC+TGG 0.521650 7:+92408620 MsaT039732.1:CDS
ATAAGTTCTAGTGGAGCAGT+TGG 0.527402 7:+92403448 MsaT039732.1:CDS
TTCTACAGGAGCTACCCCTA+AGG 0.528407 7:+92404285 MsaT039732.1:intron
TAATGGTAGTACCACGGTTG+AGG 0.529038 7:+92408608 MsaT039732.1:CDS
AGCGAAATGATTGGCAGGAG+TGG 0.533310 7:+92403785 MsaT039732.1:CDS
CTCAAGCCCCTAAGCGTCAA+AGG 0.535629 7:+92408721 MsaT039732.1:CDS
GGCTGCGAATCAGAAAATCT+GGG 0.541784 7:-92403373 None:intergenic
TGCAGATGGAGGTCCAGAAA+CGG 0.542705 7:+92406687 MsaT039732.1:CDS
ATCTGTCCTTTGACGCTTAG+GGG 0.544083 7:-92408727 None:intergenic
GCAGAGAAATCAAGAAAACT+AGG 0.544687 7:-92403691 None:intergenic
GATCAGGTCCTGACTTGCAA+TGG 0.546117 7:-92408581 None:intergenic
TATTCAAGATCTTGAGCCAA+AGG 0.548434 7:+92403873 MsaT039732.1:CDS
GAAATCAAGAAAACTAGGCA+GGG 0.552022 7:-92403686 None:intergenic
TCAAGTCATATAAGTTCTAG+TGG 0.552138 7:+92403439 MsaT039732.1:CDS
GCGAAATGATTGGCAGGAGT+GGG 0.552812 7:+92403786 MsaT039732.1:CDS
CTGGGGTATGTCTCCTCTAA+GGG 0.553089 7:-92403355 None:intergenic
CCCAGCAACTGAATAACATA+GGG 0.563465 7:+92403290 MsaT039732.1:CDS
ACATCAACACATTATTCCAA+TGG 0.565212 7:+92403637 MsaT039732.1:CDS
TAAGTTCTAGTGGAGCAGTT+GGG 0.568512 7:+92403449 MsaT039732.1:CDS
GGATGGACAGACAACGATGA+AGG 0.572042 7:-92403328 None:intergenic
GCCCAGCAACTGAATAACAT+AGG 0.578966 7:+92403289 MsaT039732.1:CDS
AAATGGTACATACCTGTAAG+TGG 0.579249 7:-92404360 None:intergenic
TTCGCAGTCATTGAGTAACA+TGG 0.580455 7:+92403564 MsaT039732.1:CDS
TATGTACCTTCAGATGACTC+TGG 0.581225 7:-92404474 None:intergenic
GGAAGCTCTACGACTGCAGA+TGG 0.586016 7:+92406673 MsaT039732.1:CDS
ACGGCTGCATGAACAGCTTG+AGG 0.587387 7:+92406706 MsaT039732.1:CDS
TCTCCTCTAAGGGTGTTGGA+TGG 0.587533 7:-92403345 None:intergenic
GGCTGTTGCAGAATTTGCTG+AGG 0.587897 7:-92404107 None:intergenic
GAAGATCGTTAGAATATCCA+GGG 0.589349 7:-92403489 None:intergenic
TGACAGTGGTATTGAGATCA+CGG 0.590168 7:+92406652 MsaT039732.1:intron
TCTACAGGAGCTACCCCTAA+GGG 0.595403 7:+92404286 MsaT039732.1:intron
AAATCAAGAAAACTAGGCAG+GGG 0.598415 7:-92403685 None:intergenic
GAGGCTGTCAATCAACTTGG+TGG 0.598508 7:+92404175 MsaT039732.1:CDS
GTATTCTTCAAATAATGGAC+CGG 0.599927 7:+92403603 MsaT039732.1:CDS
CAGCCAAGCCACGAATGCGA+TGG 0.603901 7:+92404125 MsaT039732.1:CDS
AGGCTGTCAATCAACTTGGT+GGG 0.604087 7:+92404176 MsaT039732.1:CDS
GCTTCACGAGGCATTTGTGG+AGG 0.611503 7:+92404156 MsaT039732.1:CDS
GTGGAGGCTGTCAATCAACT+TGG 0.611778 7:+92404172 MsaT039732.1:CDS
GAGCTTCAGCACACCCTTAG+GGG 0.611866 7:-92404299 None:intergenic
ATTTCGCTTAGAAAACTCCT+CGG 0.613155 7:-92403770 None:intergenic
GTTGATGTTGTAGAAGGTAC+CGG 0.613506 7:-92403622 None:intergenic
CTATCTGGAGAAAATCATGT+TGG 0.628306 7:+92404070 MsaT039732.1:CDS
TCGGCAGGACACCAATCCCA+AGG 0.630813 7:+92404028 MsaT039732.1:CDS
TATAGACCAGAGTCATCTGA+AGG 0.642332 7:+92404468 MsaT039732.1:CDS
GTGTCAGAAGACACTCCAGA+TGG 0.648683 7:-92408510 None:intergenic
CAGCGAGCTTTCCTCAACCG+TGG 0.657234 7:-92408619 None:intergenic
GATAATAACCAAGTAGAGAG+CGG 0.662017 7:+92403727 MsaT039732.1:CDS
ATGGACTCCTGAGCTTCACG+AGG 0.664112 7:+92404144 MsaT039732.1:CDS
AGCTCTACGACTGCAGATGG+AGG 0.664727 7:+92406676 MsaT039732.1:CDS
GCTTCTCAAACATCATCTGG+AGG 0.671425 7:-92408434 None:intergenic
TCGCTTAGAAAACTCCTCGG+TGG 0.696184 7:-92403767 None:intergenic
CAGTTGCGAATAGAAGAGCA+AGG 0.699827 7:+92408405 MsaT039732.1:CDS
GCTGCGAATCAGAAAATCTG+GGG 0.701278 7:-92403372 None:intergenic
CTGCAATATTATGGCCACCG+AGG 0.705670 7:+92403753 MsaT039732.1:CDS
GAGACGAAATATCTTCAATG+GGG 0.720068 7:-92405251 None:intergenic
TCAAGCTAATGGTAGTACCA+CGG 0.727330 7:+92408602 MsaT039732.1:CDS
AAGATCGTTAGAATATCCAG+GGG 0.749204 7:-92403488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 92403250 92408755 92403250 ID=MsaG039732
Chr7 mRNA 92403250 92408755 92403250 ID=MsaT039732.1;Parent=MsaG039732
Chr7 exon 92403250 92403894 92403250 ID=MsaT039732.1.exon1;Parent=MsaT039732.1
Chr7 CDS 92403250 92403894 92403250 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92403992 92404205 92403992 ID=MsaT039732.1.exon2;Parent=MsaT039732.1
Chr7 CDS 92403992 92404205 92403992 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92404293 92404369 92404293 ID=MsaT039732.1.exon3;Parent=MsaT039732.1
Chr7 CDS 92404293 92404369 92404293 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92404450 92404489 92404450 ID=MsaT039732.1.exon4;Parent=MsaT039732.1
Chr7 CDS 92404450 92404489 92404450 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92405229 92405286 92405229 ID=MsaT039732.1.exon5;Parent=MsaT039732.1
Chr7 CDS 92405229 92405286 92405229 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92406658 92406727 92406658 ID=MsaT039732.1.exon6;Parent=MsaT039732.1
Chr7 CDS 92406658 92406727 92406658 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Chr7 exon 92408390 92408755 92408390 ID=MsaT039732.1.exon7;Parent=MsaT039732.1
Chr7 CDS 92408390 92408755 92408390 ID=cds.MsaT039732.1;Parent=MsaT039732.1
Gene Sequence

>MsaT039732.1

ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTGCCCAGCAACTGAATAACATAGGGATGTCTGGAGCACTTCCTTCATCGTTGTCTGTCCATCCAACACCCTTAGAGGAGACATACCCCAGATTTTCTGATTCGCAGCCGACTTATGTGGAAAAAGATCTTAAGACAAAAACTTTTAATCATTCAAGTCATATAAGTTCTAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCTAACGATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGAAGTGCTCATTTTATTTCGCAGTCATTGAGTAACATGGCTTCGGTGCCATTACCGTATTCTTCAAATAATGGACCGGTACCTTCTACAACATCAACACATTATTCCAATGGAAACAGTGCTTCATGGCATGCAGATCCCCTGCCTAGTTTTCTTGATTTCTCTGCAAATGCCTCAATTGATAATAACCAAGTAGAGAGCGGTGCCTGCAATATTATGGCCACCGAGGAGTTTTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGACGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGATAATATTCAAGATCTTGAGCCAAAGGCGGTGGAATCCATTTCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCCCAAGGTCACCAACAACTTCCAGCTCTATCTGGAGAAAATCATGTTGGTGTTGCTCCATCTTCCTCAGCAAATTCTGCAACAGCCAAGCCACGAATGCGATGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCAATCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGTTGGAGAGAAAAAACTAAGCCCCATTGAAGATATTTCGTCTCTAGATTTGAAAACTGGTATTGAGATCACGGAAGCTCTACGACTGCAGATGGAGGTCCAGAAACGGCTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGTTGAGCCATTTAAGGCATCATCATCAGCCATTGAAAATCCATCTGGAGTGTCTTCTGACACCATGAAAGACTCTCCTACCAAAAATGAATTGGAAGCATCCAAAATGGACCATTGCAAGTCAGGACCTGATCAAGCTAATGGTAGTACCACGGTTGAGGAAAGCTCGCTGGAAGCAGTTGAGAAGCTGGATACCTCCAAATCTCAACAAGCTTCTAAGGATCTTGAGCAAAATGAAAATGAAGATAGCCCTCAAGCCCCTAAGCGTCAAAGGACAGATGAGTAA

Protein sequence

>MsaT039732.1

MEARPAFSIERSSAQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKTFNHSSHISSSGAVGHMFSSSPGYSNDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPYSSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKAVESISKSSSQFSAGHQSQGHQQLPALSGENHVGVAPSSSANSATAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSSDTMKDSPTKNELEASKMDHCKSGPDQANGSTTVEESSLEAVEKLDTSKSQQASKDLEQNENEDSPQAPKRQRTDE*