AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039763

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039763 MtrunA17_Chr7g0262001 94.678 714 36 2 1 713 1 713 0.0 1341
MsaG039763 MtrunA17_Chr1g0183321 51.279 782 282 18 3 713 5 758 0.0 674
MsaG039763 MtrunA17_Chr1g0190311 40.254 708 353 16 1 702 1 644 2.30e-160 478
MsaG039763 MtrunA17_Chr8g0392541 49.751 201 79 3 388 585 118 299 5.91e-62 209
MsaG039763 MtrunA17_Chr5g0399801 27.647 340 166 9 380 697 803 1084 8.17e-31 129
MsaG039763 MtrunA17_Chr7g0255181 31.329 316 162 9 388 698 436 701 1.93e-29 124
MsaG039763 MtrunA17_Chr8g0354821 28.655 342 170 11 384 700 394 686 6.30e-28 119
MsaG039763 MtrunA17_Chr4g0003511 27.826 345 159 13 380 697 766 1047 3.83e-27 118
MsaG039763 MtrunA17_Chr3g0080761 27.795 331 173 7 388 698 376 660 4.36e-27 117
MsaG039763 MtrunA17_Chr4g0003501 27.485 342 162 11 380 697 671 950 8.12e-27 117
MsaG039763 MtrunA17_Chr8g0373821 38.608 158 94 3 517 674 361 515 6.21e-26 112
MsaG039763 MtrunA17_Chr5g0403241 36.066 183 110 4 517 698 1327 1503 3.42e-24 108
MsaG039763 MtrunA17_Chr4g0075321 36.413 184 108 5 517 698 884 1060 3.80e-22 102
MsaG039763 MtrunA17_Chr7g0252211 29.499 339 161 12 387 698 466 753 1.99e-21 99.8
MsaG039763 MtrunA17_Chr6g0476111 29.882 338 159 14 388 698 404 690 1.91e-20 96.3
MsaG039763 MtrunA17_Chr6g0476121 29.586 338 160 14 388 698 353 639 2.60e-20 95.9
MsaG039763 MtrunA17_Chr1g0163051 25.776 322 161 14 388 690 396 658 1.57e-17 87.0
MsaG039763 MtrunA17_Chr6g0460921 34.161 161 98 4 519 675 241 397 1.93e-17 85.5
MsaG039763 MtrunA17_Chr8g0368901 25.157 318 164 12 377 676 496 757 8.36e-17 84.7
MsaG039763 MtrunA17_Chr1g0170651 28.571 322 159 12 380 697 287 541 1.05e-16 84.0
MsaG039763 MtrunA17_Chr3g0125251 32.178 202 102 9 504 698 1288 1461 3.56e-16 83.6
MsaG039763 MtrunA17_Chr6g0467381 24.765 319 166 13 379 677 301 565 8.02e-16 81.3
MsaG039763 MtrunA17_Chr8g0368911 24.759 311 160 12 384 676 496 750 8.43e-16 81.6
MsaG039763 MtrunA17_Chr6g0467421 24.765 319 166 13 379 677 301 565 1.10e-15 80.9
MsaG039763 MtrunA17_Chr6g0467531 24.299 321 165 13 379 677 301 565 1.64e-15 80.1
MsaG039763 MtrunA17_Chr6g0467401 24.451 319 167 13 379 677 301 565 1.36e-14 77.4
MsaG039763 MtrunA17_Chr6g0467411 29.444 180 104 6 515 677 310 483 1.42e-14 77.0
MsaG039763 MtrunA17_Chr7g0232811 30.583 206 109 8 524 697 331 534 3.36e-14 75.9
MsaG039763 MtrunA17_Chr7g0232841 30.918 207 108 9 524 697 319 523 1.20e-13 74.3
MsaG039763 MtrunA17_Chr7g0232981 27.273 198 112 6 524 697 322 511 4.87e-12 68.9
MsaG039763 MtrunA17_Chr1g0201621 28.324 173 104 5 525 697 67 219 5.60e-11 65.5
MsaG039763 MtrunA17_Chr1g0201311 29.885 174 100 6 525 697 67 219 9.61e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039763 AT3G04380.2 54.890 317 139 3 388 701 119 434 4.52e-130 393
MsaG039763 AT3G04380.3 54.890 317 139 3 388 701 130 445 5.09e-130 394
MsaG039763 AT3G04380.1 54.890 317 139 3 388 701 146 461 6.43e-130 394
MsaG039763 AT3G04380.4 54.890 317 139 3 388 701 146 461 8.33e-130 394
MsaG039763 AT3G04380.6 54.890 317 139 3 388 701 119 434 1.13e-129 392
MsaG039763 AT3G04380.5 54.890 317 139 3 388 701 103 418 1.30e-129 392
MsaG039763 AT1G04050.3 51.587 378 165 7 338 708 259 625 4.07e-126 389
MsaG039763 AT5G43990.7 50.125 399 173 9 311 705 244 620 4.10e-126 389
MsaG039763 AT5G43990.8 50.125 399 173 9 311 705 264 640 4.19e-126 389
MsaG039763 AT5G43990.12 50.125 399 173 9 311 705 264 640 4.19e-126 389
MsaG039763 AT5G43990.6 50.125 399 173 9 311 705 264 640 4.19e-126 389
MsaG039763 AT5G43990.13 50.125 399 173 9 311 705 264 640 4.19e-126 389
MsaG039763 AT5G43990.16 49.875 399 174 9 311 705 313 689 8.30e-126 390
MsaG039763 AT5G43990.16 45.000 140 50 2 1 120 1 133 1.97e-23 106
MsaG039763 AT5G43990.5 49.875 399 174 9 311 705 313 689 8.30e-126 390
MsaG039763 AT5G43990.5 45.000 140 50 2 1 120 1 133 1.97e-23 106
MsaG039763 AT5G43990.17 49.875 399 174 9 311 705 313 689 8.30e-126 390
MsaG039763 AT5G43990.17 45.000 140 50 2 1 120 1 133 1.97e-23 106
MsaG039763 AT5G43990.14 49.875 399 174 9 311 705 313 689 8.30e-126 390
MsaG039763 AT5G43990.14 45.000 140 50 2 1 120 1 133 1.97e-23 106
MsaG039763 AT5G43990.3 49.875 399 174 9 311 705 333 709 8.80e-126 391
MsaG039763 AT5G43990.3 45.000 140 50 2 1 120 1 133 2.11e-23 106
MsaG039763 AT5G43990.11 49.875 399 174 9 311 705 333 709 8.80e-126 391
MsaG039763 AT5G43990.11 45.000 140 50 2 1 120 1 133 2.11e-23 106
MsaG039763 AT5G43990.1 49.875 399 174 9 311 705 333 709 8.80e-126 391
MsaG039763 AT5G43990.1 45.000 140 50 2 1 120 1 133 2.11e-23 106
MsaG039763 AT5G43990.4 49.875 399 174 9 311 705 333 709 8.80e-126 391
MsaG039763 AT5G43990.4 45.000 140 50 2 1 120 1 133 2.11e-23 106
MsaG039763 AT1G04050.2 51.587 378 165 7 338 708 363 729 1.44e-125 390
MsaG039763 AT1G04050.2 53.226 62 29 0 1 62 1 62 2.18e-12 70.9
MsaG039763 AT1G04050.1 51.587 378 165 7 338 708 363 729 1.44e-125 390
MsaG039763 AT1G04050.1 53.226 62 29 0 1 62 1 62 2.18e-12 70.9
MsaG039763 AT5G43990.15 49.875 399 174 9 311 705 336 712 1.73e-125 390
MsaG039763 AT5G43990.15 45.000 140 50 2 1 120 24 156 1.87e-23 106
MsaG039763 AT5G43990.10 49.875 399 174 9 311 705 336 712 1.73e-125 390
MsaG039763 AT5G43990.10 45.000 140 50 2 1 120 24 156 1.87e-23 106
MsaG039763 AT5G43990.9 49.875 399 174 9 311 705 356 732 2.14e-125 390
MsaG039763 AT5G43990.9 45.000 140 50 2 1 120 24 156 2.10e-23 106
MsaG039763 AT5G43990.2 49.875 399 174 9 311 705 356 732 2.14e-125 390
MsaG039763 AT5G43990.2 45.000 140 50 2 1 120 24 156 2.10e-23 106
MsaG039763 AT1G73100.1 30.060 336 170 11 380 698 378 665 2.94e-30 127
MsaG039763 AT5G04940.2 28.571 329 167 13 388 698 388 666 3.22e-27 118
MsaG039763 AT5G04940.1 28.571 329 167 13 388 698 388 666 3.22e-27 118
MsaG039763 AT2G23740.3 37.838 185 109 6 518 700 1200 1380 1.41e-25 114
MsaG039763 AT2G23740.6 37.838 185 109 6 518 700 1200 1380 1.41e-25 114
MsaG039763 AT2G23740.2 37.838 185 109 6 518 700 1200 1380 1.41e-25 114
MsaG039763 AT2G23740.1 37.838 185 109 6 518 700 1193 1373 1.43e-25 114
MsaG039763 AT2G35160.2 27.476 313 158 10 388 697 543 789 8.82e-24 107
MsaG039763 AT2G35160.3 27.476 313 158 10 388 697 543 789 8.82e-24 107
MsaG039763 AT2G35160.1 27.476 313 158 10 388 697 543 789 8.82e-24 107
MsaG039763 AT2G35160.4 27.476 313 158 10 388 697 543 789 8.82e-24 107
MsaG039763 AT2G35160.5 27.476 313 158 10 388 697 507 753 1.03e-23 107
MsaG039763 AT1G17770.1 27.089 347 182 12 374 698 392 689 5.16e-23 104
MsaG039763 AT2G22740.2 26.205 332 170 12 388 698 509 786 2.68e-22 102
MsaG039763 AT2G22740.1 26.205 332 170 12 388 698 509 786 2.68e-22 102
MsaG039763 AT3G03750.2 34.225 187 104 7 520 697 169 345 6.01e-21 95.5
MsaG039763 AT5G13960.1 28.929 280 132 11 442 698 385 620 2.04e-20 96.3
MsaG039763 AT5G13960.2 28.929 280 132 11 442 698 251 486 5.48e-20 94.4
MsaG039763 AT2G23740.4 40.678 118 66 4 518 633 1200 1315 1.25e-18 91.7
MsaG039763 AT2G23740.5 40.678 118 66 4 518 633 1200 1315 1.25e-18 91.7
MsaG039763 AT2G24740.1 34.043 188 106 7 527 698 566 751 1.44e-17 87.8
MsaG039763 AT1G77300.2 31.188 202 104 9 504 698 990 1163 8.76e-15 79.3
MsaG039763 AT1G77300.1 31.188 202 104 9 504 698 990 1163 9.98e-15 79.0
MsaG039763 AT1G76710.2 26.141 241 133 9 462 697 24 224 3.63e-12 69.7
MsaG039763 AT1G76710.1 26.141 241 133 9 462 697 24 224 3.63e-12 69.7
MsaG039763 AT1G76710.3 26.141 241 133 9 462 697 24 224 5.79e-12 69.3
MsaG039763 AT1G76710.4 26.141 241 133 9 462 697 24 224 5.80e-12 69.3

Find 179 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTGCATCCAATAAAAT+TGG 0.191716 7:+92738890 None:intergenic
AATGGTGGTGGGAAGGAGTC+AGG 0.273158 7:-92739788 MsaT039763.1:CDS
TCATTCTTCGTTGAAGAATC+TGG 0.289372 7:+92740325 None:intergenic
CCACTTTCAATTATTCTTCC+TGG 0.302409 7:-92740836 MsaT039763.1:intron
CTCCCTCTTAGAGGTTCTTC+AGG 0.302519 7:+92741016 None:intergenic
ATCTCGGAACACCAAGTTTC+GGG 0.305414 7:+92739589 None:intergenic
TTCTCCCTTTGTTAGGTCAT+TGG 0.308919 7:+92739679 None:intergenic
TGGAATAACTTGCAACTTGC+AGG 0.315365 7:-92739222 MsaT039763.1:intron
AAAGGCCTCACTCGCTCTTC+TGG 0.320726 7:+92741214 None:intergenic
ATAGATCTTCTCCCTCTTAG+AGG 0.322837 7:+92741007 None:intergenic
TCGGGTACTGTACCAGGTTC+TGG 0.322983 7:+92741103 None:intergenic
TCGCATACAAATGCACCTTT+TGG 0.332075 7:+92738992 None:intergenic
GAGGCTAGCTTGGCATTAAA+AGG 0.339041 7:+92740202 None:intergenic
ATGAATGATTTATCAGAAAA+TGG 0.339753 7:-92739806 MsaT039763.1:CDS
CTCTTCAAGTGTCCTTTACA+TGG 0.346446 7:+92739314 None:intergenic
TAGCAGTCTGGAACTACTTT+CGG 0.348541 7:+92741084 None:intergenic
TGTTCTTGTGCAAATAAAAC+TGG 0.349678 7:-92739479 MsaT039763.1:CDS
GAAGAATCTGGAACACTTGA+TGG 0.355050 7:+92740337 None:intergenic
TCATCAACAGGCTCATCCTT+GGG 0.358814 7:+92740878 None:intergenic
TGCTTATATGCGGCATCATA+TGG 0.364693 7:-92738833 MsaT039763.1:CDS
TGGAGCATTCATTACATTGC+AGG 0.368904 7:+92739745 None:intergenic
TTTCGACGAAGACGATAATC+AGG 0.376682 7:-92741587 MsaT039763.1:intron
AAGTGGGCATTCTGTGCAAT+AGG 0.377130 7:+92739367 None:intergenic
GAAACTAGTACAGCATCATT+TGG 0.385206 7:+92739839 None:intergenic
CGGAACGCAGCTACAACTTT+GGG 0.385346 7:+92741736 None:intergenic
TAAATCATTCATTACATCCT+TGG 0.389569 7:+92739817 None:intergenic
ATCAGTCTGTGGAGCTGTTT+CGG 0.391115 7:-92736980 MsaT039763.1:CDS
CGCAGCTACAACTTTGGGAT+TGG 0.391553 7:+92741741 None:intergenic
ATAGGAAGGGGAGGTGGATG+AGG 0.395095 7:-92741245 MsaT039763.1:intron
ACGGAACGCAGCTACAACTT+TGG 0.397209 7:+92741735 None:intergenic
ATATGTCTCTATCTCGTATT+GGG 0.401728 7:-92739556 MsaT039763.1:CDS
GTGGGGTCTTCGTACCTTAG+AGG 0.409194 7:-92739020 MsaT039763.1:CDS
CATCTCGGAACACCAAGTTT+CGG 0.414194 7:+92739588 None:intergenic
TTGAAGAGGTTGAAATTAAG+AGG 0.415530 7:-92741193 MsaT039763.1:CDS
ACTGTACCAGGTTCTGGTTT+CGG 0.417572 7:+92741109 None:intergenic
TTCCGTGCAATGTCGTGCCT+TGG 0.428506 7:-92741718 MsaT039763.1:CDS
TCCGTGCAATGTCGTGCCTT+GGG 0.429548 7:-92741717 MsaT039763.1:CDS
AAAAGGCACTTCTACATTTG+AGG 0.429762 7:+92740219 None:intergenic
TATTCAGAAGGCGCCCGTCT+TGG 0.431829 7:+92741170 None:intergenic
AATATGTCTCTATCTCGTAT+TGG 0.433955 7:-92739557 MsaT039763.1:CDS
AGAGGTTCTTCAGGTGATGC+AGG 0.434234 7:+92741025 None:intergenic
CTACTTTCGGGTACTGTACC+AGG 0.435962 7:+92741097 None:intergenic
AGCAGTCTGGAACTACTTTC+GGG 0.436072 7:+92741085 None:intergenic
GATGGACCCTCAACTTCAAC+CGG 0.436131 7:+92737468 None:intergenic
TTCATCAACAGGCTCATCCT+TGG 0.443753 7:+92740877 None:intergenic
TCATATTCCACTTCATCAAC+AGG 0.444462 7:+92740866 None:intergenic
GGAAGTTTATTAAAGAGTGC+TGG 0.444835 7:-92739292 MsaT039763.1:CDS
TTATTGAAGAAGAGAATTAT+CGG 0.445191 7:-92741627 MsaT039763.1:CDS
TGCAAACTTGATTGAGATCC+CGG 0.450718 7:-92737487 MsaT039763.1:CDS
TCAATTGTATGATGATGGTT+TGG 0.450870 7:+92739725 None:intergenic
AGCATTAGATCGTCAATTGC+TGG 0.459600 7:-92735856 MsaT039763.1:CDS
CCACTACATACCCCGAAACT+TGG 0.462264 7:-92739600 MsaT039763.1:CDS
ATTCTGCATCCAATAAAATT+GGG 0.465274 7:+92738891 None:intergenic
GGTATGTAGTGGAACGGAGG+TGG 0.467193 7:+92739611 None:intergenic
GCAGCTACAACTTTGGGATT+GGG 0.472622 7:+92741742 None:intergenic
CGTAGACGATGAGGCTAGCT+TGG 0.472838 7:+92740192 None:intergenic
GTGGGAAACATTGTGGCAAT+CGG 0.474223 7:-92739256 MsaT039763.1:CDS
GTCAACAACGGCATTTCCAT+TGG 0.474546 7:+92741060 None:intergenic
AACTTCAAACGGAAAAGGGT+GGG 0.474771 7:-92739038 MsaT039763.1:CDS
TGCAGTCGCGTTTAGAGAAT+CGG 0.474955 7:-92740966 MsaT039763.1:CDS
CATTTAACAGGCGTTGGAGC+CGG 0.482352 7:-92741487 MsaT039763.1:intron
CAAGCTAGCCTCATCGTCTA+CGG 0.483428 7:-92740191 MsaT039763.1:CDS
TATCATCAATTGTATGATGA+TGG 0.484509 7:+92739720 None:intergenic
CTTAATTTCAACCTCTTCAA+AGG 0.485472 7:+92741196 None:intergenic
AGATTGTTGTTCTACCTGTA+TGG 0.486001 7:-92739528 MsaT039763.1:CDS
TGTCAAGTCTTCTTCTGCCT+CGG 0.486075 7:-92739903 MsaT039763.1:CDS
ATGGTGGTGGGAAGGAGTCA+GGG 0.489169 7:-92739787 MsaT039763.1:CDS
ACAGGCGTTGGAGCCGGAGC+AGG 0.494435 7:-92741481 MsaT039763.1:intron
ATTGGATGCAGAATGGGACT+CGG 0.501646 7:-92738882 MsaT039763.1:CDS
TGCTGGAGCAAATGTGGTTG+TGG 0.502795 7:-92739275 MsaT039763.1:CDS
ATCAGAAAATGGTGGTGGGA+AGG 0.507399 7:-92739795 MsaT039763.1:CDS
ACTTCAAACGGAAAAGGGTG+GGG 0.508982 7:-92739037 MsaT039763.1:CDS
CTGCTAGGTTTATTAATCAC+AGG 0.510781 7:-92738805 MsaT039763.1:intron
TCAAAAGAATCCGAGGCAAA+TGG 0.511223 7:-92739980 MsaT039763.1:CDS
TGAGATCCCGGTTGAAGTTG+AGG 0.511676 7:-92737475 MsaT039763.1:CDS
ATTTCCATTGGATAGCAGTC+TGG 0.512156 7:+92741072 None:intergenic
GATTTATCAGAAAATGGTGG+TGG 0.512406 7:-92739800 MsaT039763.1:CDS
TATTGAAGAAGAGAATTATC+GGG 0.513070 7:-92741626 MsaT039763.1:CDS
AGAGAATCGGCTGTTGAACC+AGG 0.513463 7:-92740953 MsaT039763.1:CDS
TTAAGCAGTTTCTTCAACAC+AGG 0.513595 7:+92741673 None:intergenic
AAAGATTCTTCTGTTGCAAG+TGG 0.514308 7:-92739935 MsaT039763.1:CDS
TTTGACAACAGAGAGGCTCC+TGG 0.514647 7:+92740935 None:intergenic
CAGCACAGGAAGAGTTGACC+TGG 0.518514 7:-92737286 MsaT039763.1:CDS
TGAAATTAAGAGGCCAAGAC+GGG 0.518857 7:-92741183 MsaT039763.1:CDS
AGCCTCATCGTCTACGGGAG+AGG 0.522947 7:-92740185 MsaT039763.1:intron
ATGGGACTCGGGAGTTGTAA+AGG 0.526930 7:-92738870 MsaT039763.1:CDS
TCCCAAGGCACGACATTGCA+CGG 0.527590 7:+92741716 None:intergenic
CACTGCACAAGGTGTACTAA+AGG 0.528767 7:-92739441 MsaT039763.1:CDS
ATCATACAATTGATGATACA+AGG 0.530123 7:-92739715 MsaT039763.1:CDS
AAGCTAGCCTCATCGTCTAC+GGG 0.530312 7:-92740190 MsaT039763.1:CDS
ACAGCATCATTTGGACCACT+TGG 0.530441 7:+92739848 None:intergenic
CCAGGAAGAATAATTGAAAG+TGG 0.531870 7:+92740836 None:intergenic
AATTAGTGTGCCATTTGCCT+CGG 0.535283 7:+92739970 None:intergenic
GAGATCCCGGTTGAAGTTGA+GGG 0.535502 7:-92737474 MsaT039763.1:CDS
GCATTTGTATGCGAGTTTGT+TGG 0.535737 7:-92738983 MsaT039763.1:CDS
TCACCTGAAGAACCTCTAAG+AGG 0.535998 7:-92741019 MsaT039763.1:CDS
CTTGAAATATCAAAGAATGA+TGG 0.536228 7:-92739347 MsaT039763.1:CDS
TCATTCTTTGATATTTCAAG+TGG 0.536998 7:+92739350 None:intergenic
TGGAAATGCCGTTGTTGACA+AGG 0.537284 7:-92741056 MsaT039763.1:CDS
ACCTTAGAGGATCTTCCAAA+AGG 0.538142 7:-92739007 MsaT039763.1:CDS
CATCAACAGGCTCATCCTTG+GGG 0.539530 7:+92740879 None:intergenic
AAACATATAGGAAGGGGAGG+TGG 0.546203 7:-92741251 MsaT039763.1:intron
TAAGACACAATTGCCCATAC+AGG 0.549177 7:+92739514 None:intergenic
AACACTGTGGCATCACCATA+CGG 0.550826 7:-92740277 MsaT039763.1:CDS
AGCGAGTGAGGCCTTTGAAG+AGG 0.550939 7:-92741207 MsaT039763.1:CDS
GTTGTTGCCATCTTGCTCTC+CGG 0.550961 7:+92740297 None:intergenic
TGATGCTGTACTAGTTTCCA+AGG 0.551345 7:-92739834 MsaT039763.1:CDS
GATTCTCTAAACGCGACTGC+AGG 0.552600 7:+92740968 None:intergenic
GGCACTTCTACATTTGAGGA+AGG 0.554254 7:+92740223 None:intergenic
TGTACTAAAGGAAGAGTTCG+TGG 0.555497 7:-92739429 MsaT039763.1:CDS
CTCGTCCAGAAGAGCGAGTG+AGG 0.555750 7:-92741219 MsaT039763.1:CDS
ACATGATAATAGTGATGAGA+TGG 0.557142 7:+92737450 None:intergenic
TACGGAAACGAAAATGTTGA+AGG 0.557603 7:-92740259 MsaT039763.1:CDS
CTTCTTTCCCTTGTCAACAA+CGG 0.558518 7:+92741048 None:intergenic
TTGAAATTAAGAGGCCAAGA+CGG 0.558896 7:-92741184 MsaT039763.1:CDS
TAGTACACCTTGTGCAGTGT+AGG 0.562647 7:+92739445 None:intergenic
CATCATATGGAAATGCTGCT+AGG 0.565185 7:-92738820 MsaT039763.1:CDS
GATTGTTGTTCTACCTGTAT+GGG 0.567191 7:-92739527 MsaT039763.1:CDS
AATGCGGCAGTAAATTCTGC+AGG 0.567559 7:-92736953 MsaT039763.1:CDS
TTCAAACATATAGGAAGGGG+AGG 0.567942 7:-92741254 MsaT039763.1:intron
CTTTGTGTTCCTCAATCCCA+AGG 0.570151 7:+92741701 None:intergenic
CCGTTGAAGAGTTGCATGAG+AGG 0.572231 7:-92738949 MsaT039763.1:CDS
CCTCTCATGCAACTCTTCAA+CGG 0.572497 7:+92738949 None:intergenic
CCAAGTTTCGGGGTATGTAG+TGG 0.575383 7:+92739600 None:intergenic
TAACTTCAAACGGAAAAGGG+TGG 0.576424 7:-92739039 MsaT039763.1:CDS
GCTGGAGCAAATGTGGTTGT+GGG 0.576532 7:-92739274 MsaT039763.1:CDS
AATGTCGTGCCTTGGGATTG+AGG 0.578104 7:-92741710 MsaT039763.1:CDS
GCATTAGATCGTCAATTGCT+GGG 0.582102 7:-92735855 MsaT039763.1:CDS
AGTTCCAGACTGCTATCCAA+TGG 0.584444 7:-92741076 MsaT039763.1:CDS
GCTACCAATGACCTAACAAA+GGG 0.586822 7:-92739683 MsaT039763.1:CDS
GGTTGTTTAGAACCATGTAA+AGG 0.588108 7:-92739326 MsaT039763.1:CDS
TTGAGCCACCGCTATTCAGA+AGG 0.590615 7:+92741158 None:intergenic
TTGGATGCAGAATGGGACTC+GGG 0.591262 7:-92738881 MsaT039763.1:CDS
CCGCATATAAGCAAAGAGCT+TGG 0.591694 7:+92738843 None:intergenic
GGATGAGCCTGTTGATGAAG+TGG 0.592139 7:-92740873 MsaT039763.1:CDS
TGGTGGTGGGAAGGAGTCAG+GGG 0.592292 7:-92739786 MsaT039763.1:CDS
GCAAATGGCACACTAATTGA+CGG 0.593143 7:-92739965 MsaT039763.1:CDS
GTTTCTTCACACTGCCCAAG+TGG 0.593879 7:-92739863 MsaT039763.1:CDS
CAGCATCATTTGGACCACTT+GGG 0.595553 7:+92739849 None:intergenic
GTATGTAGTGGAACGGAGGT+GGG 0.595993 7:+92739612 None:intergenic
GGGCGCCTTCTGAATAGCGG+TGG 0.597665 7:-92741163 MsaT039763.1:CDS
CCAAGCTCTTTGCTTATATG+CGG 0.599852 7:-92738843 MsaT039763.1:CDS
ATTTATCAGAAAATGGTGGT+GGG 0.604456 7:-92739799 MsaT039763.1:CDS
GTAAAGATAACGCCAACAGT+TGG 0.607022 7:-92740007 MsaT039763.1:CDS
TCAACGAAGAATGATACAGC+CGG 0.609769 7:-92740316 MsaT039763.1:CDS
GATACAGCCGGAGAGCAAGA+TGG 0.613302 7:-92740304 MsaT039763.1:CDS
CAGGAAGAATAATTGAAAGT+GGG 0.614074 7:+92740837 None:intergenic
CACCTGAAGAACCTCTAAGA+GGG 0.617054 7:-92741018 MsaT039763.1:CDS
GAGAGCTTGAGGTGCGACCG+AGG 0.619496 7:+92739886 None:intergenic
GGAAATGCCGTTGTTGACAA+GGG 0.619844 7:-92741055 MsaT039763.1:CDS
TTGTGCAAATAAAACTGGAG+GGG 0.619905 7:-92739474 MsaT039763.1:CDS
GTGATAAAAGGGTAAGCATG+AGG 0.620989 7:+92740902 None:intergenic
CTTGTGCAAATAAAACTGGA+GGG 0.623879 7:-92739475 MsaT039763.1:CDS
CATTCTTTGATATTTCAAGT+GGG 0.624513 7:+92739351 None:intergenic
ACATATTAACATATGCATCT+CGG 0.625013 7:+92739573 None:intergenic
CATGTAAAGGACACTTGAAG+AGG 0.627286 7:-92739313 MsaT039763.1:CDS
AAAACACCGAAACCAGAACC+TGG 0.629811 7:-92741115 MsaT039763.1:CDS
CGGGGTATGTAGTGGAACGG+AGG 0.630898 7:+92739608 None:intergenic
ATCAACAGGCTCATCCTTGG+GGG 0.632661 7:+92740880 None:intergenic
GACGGGCGCCTTCTGAATAG+CGG 0.633851 7:-92741166 MsaT039763.1:CDS
TGGCCTTTCAAAAGAATCCG+AGG 0.635568 7:-92739987 MsaT039763.1:CDS
TGTGAAGAAACGAGAGCTTG+AGG 0.636405 7:+92739875 None:intergenic
TCTTGTGCAAATAAAACTGG+AGG 0.636661 7:-92739476 MsaT039763.1:CDS
TCATACAATTGATGATACAA+GGG 0.638178 7:-92739714 MsaT039763.1:CDS
TTTCGGGGTATGTAGTGGAA+CGG 0.641425 7:+92739605 None:intergenic
TGCTACCAATGACCTAACAA+AGG 0.641969 7:-92739684 MsaT039763.1:CDS
AAAGAGTGCTGGAGCAAATG+TGG 0.647429 7:-92739281 MsaT039763.1:CDS
AGTTGCAAGTTATTCCACGT+TGG 0.647632 7:+92739228 None:intergenic
TACCTCTCCCGTAGACGATG+AGG 0.655521 7:+92740183 None:intergenic
GAGCTGTTTCGGTGCAAATG+CGG 0.659533 7:-92736969 MsaT039763.1:CDS
TGTGGTTGTGGGAAACATTG+TGG 0.665887 7:-92739263 MsaT039763.1:CDS
TGATGACGATGATCAGTCTG+TGG 0.667712 7:-92736991 MsaT039763.1:CDS
AATGATTTATCAGAAAATGG+TGG 0.678300 7:-92739803 MsaT039763.1:CDS
TCTCGGAACACCAAGTTTCG+GGG 0.678594 7:+92739590 None:intergenic
GGCAATCGGATTGTCCAACG+TGG 0.681486 7:-92739242 MsaT039763.1:CDS
AGCACAGGAAGAGTTGACCT+GGG 0.686803 7:-92737285 MsaT039763.1:intron
ATGGACCCTCAACTTCAACC+GGG 0.708842 7:+92737469 None:intergenic
AATGGCACACTAATTGACGG+AGG 0.733922 7:-92739962 MsaT039763.1:CDS
GCAAGATGGCAACAACACTG+TGG 0.769030 7:-92740290 MsaT039763.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 92735852 92741770 92735852 ID=MsaG039763
Chr7 mRNA 92735852 92741770 92735852 ID=MsaT039763.1;Parent=MsaG039763
Chr7 exon 92735852 92735880 92735852 ID=MsaT039763.1.exon10;Parent=MsaT039763.1
Chr7 CDS 92735852 92735880 92735852 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92736934 92737030 92736934 ID=MsaT039763.1.exon9;Parent=MsaT039763.1
Chr7 CDS 92736934 92737030 92736934 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92737286 92737336 92737286 ID=MsaT039763.1.exon8;Parent=MsaT039763.1
Chr7 CDS 92737286 92737336 92737286 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92737452 92737518 92737452 ID=MsaT039763.1.exon7;Parent=MsaT039763.1
Chr7 CDS 92737452 92737518 92737452 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92738806 92739068 92738806 ID=MsaT039763.1.exon6;Parent=MsaT039763.1
Chr7 CDS 92738806 92739068 92738806 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92739223 92740038 92739223 ID=MsaT039763.1.exon5;Parent=MsaT039763.1
Chr7 CDS 92739223 92740038 92739223 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92740186 92740361 92740186 ID=MsaT039763.1.exon4;Parent=MsaT039763.1
Chr7 CDS 92740186 92740361 92740186 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92740837 92741263 92740837 ID=MsaT039763.1.exon3;Parent=MsaT039763.1
Chr7 CDS 92740837 92741263 92740837 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92741467 92741499 92741467 ID=MsaT039763.1.exon2;Parent=MsaT039763.1
Chr7 CDS 92741467 92741499 92741467 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Chr7 exon 92741588 92741770 92741588 ID=MsaT039763.1.exon1;Parent=MsaT039763.1
Chr7 CDS 92741588 92741770 92741588 ID=cds.MsaT039763.1;Parent=MsaT039763.1
Gene Sequence

>MsaT039763.1

ATGGCACCCAATCCCAAAGTTGTAGCTGCGTTCCGTGCAATGTCGTGCCTTGGGATTGAGGAACACAAAGTTAAACCTGTGTTGAAGAAACTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATCGGGCTCTTGCTGATGCTATTTTCGACGAAGACGATAATCAGGCGTTGGAGCCGGAGCAGGAAAAGAAAAACAAGGAAGGGGAGGTGGATGAGGAAGCTCGTCCAGAAGAGCGAGTGAGGCCTTTGAAGAGGTTGAAATTAAGAGGCCAAGACGGGCGCCTTCTGAATAGCGGTGGCTCAAGTACAGCTGCCTTTGCATTGAAAACACCGAAACCAGAACCTGGTACAGTACCCGAAAGTAGTTCCAGACTGCTATCCAATGGAAATGCCGTTGTTGACAAGGGAAAGAAGCCTGCATCACCTGAAGAACCTCTAAGAGGGAGAAGATCTATATCTGACAGAACTCAACCTGCAGTCGCGTTTAGAGAATCGGCTGTTGAACCAGGAGCCTCTCTGTTGTCAAAAAGCAAAACGCCTCATGCTTACCCTTTTATCACCCCCAAGGATGAGCCTGTTGATGAAGTGGAATATGATTACGTCCCACTTTCAATTATTCTTCCTGAACCATCAAGTGTTCCAGATTCTTCAACGAAGAATGATACAGCCGGAGAGCAAGATGGCAACAACACTGTGGCATCACCATACGGAAACGAAAATGTTGAAGGTGAAGATATTCTTCCTTCCTCAAATGTAGAAGTGCCTTTTAATGCCAAGCTAGCCTCATCGTCTACGGGAGAGGAAGCATCTGTAAAGATAACGCCAACAGTTGGCCTTTCAAAAGAATCCGAGGCAAATGGCACACTAATTGACGGAGGAAATAAAGATTCTTCTGTTGCAAGTGGATCAATCTCTGTCAAGTCTTCTTCTGCCTCGGTCGCACCTCAAGCTCTCGTTTCTTCACACTGCCCAAGTGGTCCAAATGATGCTGTACTAGTTTCCAAGGATGTAATGAATGATTTATCAGAAAATGGTGGTGGGAAGGAGTCAGGGGAACCTATGCCTCAAAATTCCTGCAATGTAATGAATGCTCCAAACCATCATCATACAATTGATGATACAAGGGCTGTTTGTGCTACCAATGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATGATTCTAATAATGATATCCCACCTCCGTTCCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTTAATATGTCTCTATCTCGTATTGGGAGTGAAGATTGTTGTTCTACCTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGGGATTTTGCCTACACTGCACAAGGTGTACTAAAGGAAGAGTTCGTGGAAGAGTGTATTGCCATCAGCCGTGATCCACAAAATCATTCCTATTGCACAGAATGCCCACTTGAAATATCAAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGTTGTGGGAAACATTGTGGCAATCGGATTGTCCAACGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAAACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTTTAACCGTTGAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAACATACGTTCCCAATTTTATTGGATGCAGAATGGGACTCGGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCGGCATCATATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCCTTCTTCACATCCAGAAAAATCGCAGCACAGGAAGAGTTGACCTGGGATTATGGTATCGATTTTGATGACGATGATCAGTCTGTGGAGCTGTTTCGGTGCAAATGCGGCAGTAAATTCTGCAGGAATATGAAGCGCTCAAATAGAAGCATTAGATCGTCAATTGCTGGGTGA
Protein sequence

>MsaT039763.1

MAPNPKVVAAFRAMSCLGIEEHKVKPVLKKLLKLYDKNWELIEEENYRALADAIFDEDDNQALEPEQEKKNKEGEVDEEARPEERVRPLKRLKLRGQDGRLLNSGGSSTAAFALKTPKPEPGTVPESSSRLLSNGNAVVDKGKKPASPEEPLRGRRSISDRTQPAVAFRESAVEPGASLLSKSKTPHAYPFITPKDEPVDEVEYDYVPLSIILPEPSSVPDSSTKNDTAGEQDGNNTVASPYGNENVEGEDILPSSNVEVPFNAKLASSSTGEEASVKITPTVGLSKESEANGTLIDGGNKDSSVASGSISVKSSSASVAPQALVSSHCPSGPNDAVLVSKDVMNDLSENGGGKESGEPMPQNSCNVMNAPNHHHTIDDTRAVCATNDLTKGEEKVKISWVNDSNNDIPPPFHYIPRNLVFRDAYVNMSLSRIGSEDCCSTCMGNCVLSSKPCSCANKTGGDFAYTAQGVLKEEFVEECIAISRDPQNHSYCTECPLEISKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGITCNLQVFLTSNGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKNGKHTFPILLDAEWDSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSRKIAAQEELTWDYGIDFDDDDQSVELFRCKCGSKFCRNMKRSNRSIRSSIAG*