AlfalfaGEDB | MsaG039775

M. sativa ssp. caerulea / MsaG039775

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039775	XP_003625388.1	37.943	282	168	1	79	360	203	477	5.31e-36	159
MsaG039775	XP_003625388.1	48.413	378	173	3	1	361	10	382	1.14e-85	303
MsaG039775	XP_003625388.1	87.619	735	26	2	74	743	246	980	0.0	1257

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039775	sp\|Q9M0G7\|MIK1_ARATH	64.266	736	194	5	74	743	238	970	0.0	941
MsaG039775	sp\|Q9M0G7\|MIK1_ARATH	34.527	391	207	7	1	360	1	373	1.26e-47	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039775	tr\|G7KXH2\|G7KXH2_MEDTR	37.943	282	168	1	79	360	203	477	2.54e-36	159
MsaG039775	tr\|G7KXH2\|G7KXH2_MEDTR	48.413	378	173	3	1	361	10	382	5.43e-86	303
MsaG039775	tr\|G7KXH2\|G7KXH2_MEDTR	87.619	735	26	2	74	743	246	980	0.0	1257

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG007335	MsaG039775	0.809573	3.022363e-50	5.108585e-48
MsaG010104	MsaG039775	0.804937	2.871359e-49	4.346738e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039775	MtrunA17_Chr7g0262141	87.619	735	26	2	74	743	246	980	0.0	1257
MsaG039775	MtrunA17_Chr7g0262141	48.413	378	173	3	1	361	10	382	1.05e-89	303
MsaG039775	MtrunA17_Chr7g0262141	37.943	282	168	1	79	360	203	477	4.88e-40	159
MsaG039775	MtrunA17_Chr1g0183231	72.653	735	134	4	74	743	238	970	0.0	1076
MsaG039775	MtrunA17_Chr1g0183231	38.483	356	194	3	26	361	24	374	5.06e-60	219
MsaG039775	MtrunA17_Chr1g0183231	29.060	234	142	1	129	362	70	279	7.15e-20	95.1
MsaG039775	MtrunA17_Chr1g0190411	63.251	732	242	6	13	743	272	977	0.0	905
MsaG039775	MtrunA17_Chr1g0190411	32.143	448	265	7	1	419	1	438	2.53e-59	217
MsaG039775	MtrunA17_Chr1g0190411	37.943	282	168	1	79	360	203	477	2.02e-45	175
MsaG039775	MtrunA17_Chr4g0018701	44.248	678	338	14	84	743	334	989	0.0	564

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039775	AT4G28650.1	64.266	736	194	5	74	743	238	970	0.0	941
MsaG039775	AT4G28650.1	34.527	391	207	7	1	360	1	373	1.28e-48	185
MsaG039775	AT1G08590.1	58.824	697	255	8	78	743	299	994	0.0	773
MsaG039775	AT1G08590.1	34.115	384	220	5	4	360	5	382	8.58e-53	198
MsaG039775	AT1G08590.1	35.612	278	172	1	73	350	198	468	1.00e-40	161
MsaG039775	AT1G08590.1	33.798	287	183	1	74	360	151	430	4.03e-39	156
MsaG039775	AT1G08590.1	33.333	183	106	3	66	244	431	601	9.62e-14	75.9
MsaG039775	AT5G61480.1	43.200	750	372	16	13	743	277	991	0.0	569
MsaG039775	AT5G61480.1	32.571	350	193	5	42	360	49	386	7.17e-42	165
MsaG039775	AT5G61480.1	33.714	350	210	3	13	362	157	484	6.08e-41	162

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Find 154 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGCGCACTCATCA+AGG	0.542781	7:-92910039	MsaT039775.1:CDS
AAAGAAAGTGATGTGGAAGA+AGG	0.516651	7:+92910547	None:intergenic
AAAGGAGGGTACCACCACAT+AGG	0.641285	7:+92910071	None:intergenic
AACCAAAATTGTAATTCCAA+TGG	0.540569	7:+92909952	None:intergenic
AACTGATACTTCATCATTTG+AGG	0.408198	7:+92911818	None:intergenic
AACTGTTTGCCTACCATGCA+AGG	0.527931	7:+92909520	None:intergenic
AAGATTGATGTATACAGTTA+TGG	0.443382	7:-92908857	MsaT039775.1:CDS
AAGATTTGGAATGGATAAAA+TGG	0.300481	7:+92910480	None:intergenic
AAGGTAGCAAAGGGTGGCCA+TGG	0.506485	7:-92909868	MsaT039775.1:CDS
AAGTGATGAGCTTGTTGGAG+AGG	0.570084	7:-92909660	MsaT039775.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92908616	92911910	92908616	ID=MsaG039775
Chr7	mRNA	92908616	92911910	92908616	ID=MsaT039775.1;Parent=MsaG039775
Chr7	exon	92908616	92908908	92908616	ID=MsaT039775.1.exon4;Parent=MsaT039775.1
Chr7	CDS	92908616	92908908	92908616	ID=cds.MsaT039775.1;Parent=MsaT039775.1
Chr7	exon	92909282	92910877	92909282	ID=MsaT039775.1.exon3;Parent=MsaT039775.1
Chr7	CDS	92909282	92910877	92909282	ID=cds.MsaT039775.1;Parent=MsaT039775.1
Chr7	exon	92911073	92911180	92911073	ID=MsaT039775.1.exon2;Parent=MsaT039775.1
Chr7	CDS	92911073	92911180	92911073	ID=cds.MsaT039775.1;Parent=MsaT039775.1
Chr7	exon	92911670	92911910	92911670	ID=MsaT039775.1.exon1;Parent=MsaT039775.1
Chr7	CDS	92911670	92911910	92911670	ID=cds.MsaT039775.1;Parent=MsaT039775.1

Gene Sequence

>MsaT039775.1

ATGAAAACTCAAATTTTCATCTTCTTCTGTTACATTGTCATTTTTTGTTTTTCTAACAGTTTTTCTGCTACCTCAAATGATGAAGTATCAGTTTTGCTTTCTTTGAAAGAAGGTCTTGTTGATCCTTTGAATACCCTTCAGGATTGGAAATTGGATGCTGCTCATTGTAACTGGACCGGAATCAAATGCAACTCGGCTGGAACTGTAGAGAACCTTGATCTCTCTCACAAGAATCTCAGTGTAGCAAATCTTGGTGGTGAGATTCCAGAGGAATTAGGAAATCTCAAGTTATTGGATACACTTTTCTTATACAACAACAATCTTGAAGGAAGAATTCCATCACAAATTGGTCCATTGCCTAGTAACCTCGGCGAGAATTCACCATTGCAATGGTTGGATGTATCATCCAATTCACTCTCTGGAAAGATTCCAGAAACTCTTTGCAGCAAGGGAAATCTTACCAAGCTAATACTTTTCAACAATGCTTTCTCTGGTCCAATTCCATCAAGCCTATCAATGTGTTCTTCGCTTGTTCGTGTTCGAGTTCACAACAATTTTCTTTCTGGAACAGTTCCTGTTGGTCTTGGTAAGCTTGAGAAGCTTGAAAGGTTAGAATTGGCTAACAATAGTCTCACTGGTGAAATTCCAGATGATATTCCTTCTTCCACATCACTTTCTTTCATTGATCTCTCAAGAAACAAACTTCATTTTTCTCTCCCTTCCACCATTTTATCCATTCCAAATCTTCAAGTTTTCAAGGTCTCCAACAACAACTTAGAAGGAAAAATTCCAGACCAATTTCAGGACTCTCCTTCACTTACTGTTCTTGATCTCTCGTCAAATCATTTGTCCGGAACCATTCCAGATAGTATAGGTTCATGTCAAAAATTAGTAAATTTGAACCTGCAAAATAACCTTTTGATTGGTGAAATCCCAAAAGCATTAGCTAACATGCCTACAATGGCGATGCTTGATCTTTCAAACAATTCTTTGACTGGTCATATACCTGAAAACTTTGGTGTATCTCCAGCTCTTGAAGCATTTGATGTCTCATACAACAAGCTTGAAGGTTCTGTGCCAGAAAATGGTATGCTAAGAACCATAAACCCGAATAATCTTGTCGGCAATGCTGGCCTATGTGGTGGTACCCTCCTTTCATGTGATCAAAACTCAGCGCACTCATCAAGGCATGGAATTTCACATGAAAAACACATTATCACAGGATGGATCATTGGAATATCATCAATTCTAGCCATTGGAATTACAATTTTGGTTGCAAGATCTTTATATGTAAGGTGGTACACTGGTGGTTTTTGCTTCAGAGAAAGATTTTATAAAGGTAGCAAAGGGTGGCCATGGAGATTGATGGCATTTCAGAGACTTGGATTTACAAGTACTGACATTCTGGCTTGTATCAAAGAAACAAATGTGATTGGAATGGGAGGCACCGGCGTTGTTTACAAGGCTGAGGTACCTCATTCTAACACAGTTGTGGCAGTGAAAAAGTTGTGGAGATCAGGAAATGATGTTGAAGTAGGAGGAGGAAGTGATGAGCTTGTTGGAGAGGTGAATCTTTTAGGGAGACTAAGGCATAGGAACATTGTTAGATTATTAGGATTTCTTCATAATGACACTGATTTGATGATAGTTTATGAATTTATGAACAATGGTAATCTTGGAGATGCCTTGCATGGTAGGCAAACAGTTAGGCATCTTGTGGATTGGGTTTCAAGATATAACATAGCTCTAGGAGTTGCTCAAGGACTTGCGTATCTTCACCATGACTGTCATCCGCCGGTTATTCATCGCGATATCAAGTCAAACAATATACTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTCGGGTTAGCCAAGATGATGATCCAGAAGAACGAAACAGTCTCCATGGTTGCCGGATCCTATGGCTACATTGCTCCTGAATATGGATATGCATTGAAGGTGGATGAAAAGATTGATGTATACAGTTATGGAGTAGTTTTATTGGAGCTTGTCACAGGAAAGAGGCCATTAGATCATGAATTTGGAGAGAGTGTAGACATTGTAGAGTGGATTAGAAGGAAAATTAGAGACAACAAATCTCTAGAAGAAGCATTAGATCCAAGTGTAGGAAACTGCAGACATGTTATAGAAGAGATGCTTCTAGTTTTAAGAATAGCAGTTGTTTGCACTGCTAAGCTTCCTAAGGAAAGACCAAGCATGAGGATGTTATAA

Protein sequence

>MsaT039775.1

MKTQIFIFFCYIVIFCFSNSFSATSNDEVSVLLSLKEGLVDPLNTLQDWKLDAAHCNWTGIKCNSAGTVENLDLSHKNLSVANLGGEIPEELGNLKLLDTLFLYNNNLEGRIPSQIGPLPSNLGENSPLQWLDVSSNSLSGKIPETLCSKGNLTKLILFNNAFSGPIPSSLSMCSSLVRVRVHNNFLSGTVPVGLGKLEKLERLELANNSLTGEIPDDIPSSTSLSFIDLSRNKLHFSLPSTILSIPNLQVFKVSNNNLEGKIPDQFQDSPSLTVLDLSSNHLSGTIPDSIGSCQKLVNLNLQNNLLIGEIPKALANMPTMAMLDLSNNSLTGHIPENFGVSPALEAFDVSYNKLEGSVPENGMLRTINPNNLVGNAGLCGGTLLSCDQNSAHSSRHGISHEKHIITGWIIGISSILAIGITILVARSLYVRWYTGGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGGTGVVYKAEVPHSNTVVAVKKLWRSGNDVEVGGGSDELVGEVNLLGRLRHRNIVRLLGFLHNDTDLMIVYEFMNNGNLGDALHGRQTVRHLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIQKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELVTGKRPLDHEFGESVDIVEWIRRKIRDNKSLEEALDPSVGNCRHVIEEMLLVLRIAVVCTAKLPKERPSMRML*