AlfalfaGEDB | MsaG039902

M. sativa ssp. caerulea / MsaG039902

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039902	AES79326.2	98.802	167	0	1	1	165	1	167	1.77e-117	339

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039902	sp\|Q8VYK4\|NFYB8_ARATH	74.850	167	27	7	1	158	1	161	5.75e-78	232

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039902	tr\|G7L4J2\|G7L4J2_MEDTR	98.802	167	0	1	1	165	1	167	8.43e-118	339

TFs/TRs:

Gene ID	Type	Classification
MsaG039902	TF	NF-YB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000412	MsaG039902	0.806552	1.319557e-49	2.074742e-47
MsaG000535	MsaG039902	0.840907	1.213713e-57	4.874936e-55
MsaG000605	MsaG039902	0.837276	1.048119e-56	3.759615e-54
MsaG000707	MsaG039902	0.821622	6.436589e-53	1.477756e-50
MsaG000847	MsaG039902	0.808233	5.829381e-50	9.539897e-48
MsaG000977	MsaG039902	0.807138	9.932855e-50	1.583428e-47
MsaG001939	MsaG039902	0.852216	1.022990e-60	5.987614e-58
MsaG002379	MsaG039902	0.883505	9.068313e-71	1.932260e-67
MsaG002489	MsaG039902	0.826780	4.005452e-54	1.058528e-51
MsaG002603	MsaG039902	0.803479	5.755867e-49	8.423881e-47
MsaG002775	MsaG039902	0.801946	1.188622e-48	1.679417e-46
MsaG002835	MsaG039902	0.833617	8.734574e-56	2.807780e-53
MsaG003384	MsaG039902	0.803811	4.915906e-49	7.250022e-47
MsaG003861	MsaG039902	0.825554	7.813875e-54	1.995815e-51
MsaG004107	MsaG039902	0.807855	7.012277e-50	1.137194e-47
MsaG004441	MsaG039902	0.807239	9.458026e-50	1.511322e-47
MsaG004452	MsaG039902	0.813392	4.515161e-51	8.382638e-49
MsaG004514	MsaG039902	0.867329	2.986868e-65	3.099797e-62
MsaG004568	MsaG039902	0.813148	5.104939e-51	9.419765e-49
MsaG004811	MsaG039902	0.829180	1.066337e-54	3.014208e-52
MsaG004918	MsaG039902	0.800073	2.857520e-48	3.869909e-46
MsaG005214	MsaG039902	0.821109	8.444958e-53	1.912633e-50
MsaG005248	MsaG039902	0.805703	1.987910e-49	3.063491e-47
MsaG005410	MsaG039902	0.826520	4.617615e-54	1.211544e-51
MsaG005540	MsaG039902	0.810538	1.877181e-50	3.248038e-48
MsaG005869	MsaG039902	0.818150	3.969821e-52	8.318291e-50
MsaG006122	MsaG039902	0.821762	5.978761e-53	1.377716e-50
MsaG006255	MsaG039902	0.837058	1.191270e-56	4.244978e-54
MsaG006314	MsaG039902	0.802545	8.960379e-49	1.283495e-46
MsaG006924	MsaG039902	0.804457	3.611558e-49	5.406760e-47
MsaG007139	MsaG039902	0.804517	3.509823e-49	5.261763e-47
MsaG007182	MsaG039902	0.824038	1.773092e-53	4.344850e-51
MsaG008029	MsaG039902	0.814096	3.165184e-51	5.980970e-49
MsaG008619	MsaG039902	0.824297	1.542046e-53	3.805472e-51
MsaG009726	MsaG039902	0.801944	1.189367e-48	1.680409e-46
MsaG011472	MsaG039902	0.811856	9.748652e-51	1.742120e-48
MsaG012163	MsaG039902	0.822729	3.574322e-53	8.453464e-51
MsaG012308	MsaG039902	0.823876	1.934655e-53	4.719755e-51
MsaG012723	MsaG039902	0.812928	5.702124e-51	1.046413e-48
MsaG014815	MsaG039902	0.805433	2.262737e-49	3.465107e-47
MsaG015371	MsaG039902	0.804997	2.789056e-49	4.228157e-47
MsaG015871	MsaG039902	0.822860	3.332720e-53	7.910033e-51
MsaG016209	MsaG039902	0.815263	1.750305e-51	3.406130e-49
MsaG016327	MsaG039902	0.847288	2.399264e-59	1.186318e-56
MsaG016471	MsaG039902	0.822901	3.260404e-53	7.746904e-51
MsaG016772	MsaG039902	0.834283	5.958611e-56	1.953583e-53
MsaG017009	MsaG039902	0.864070	3.154443e-64	2.871614e-61
MsaG016980	MsaG039902	0.806008	1.716076e-49	2.663507e-47
MsaG017051	MsaG039902	0.807070	1.026830e-49	1.634270e-47
MsaG017109	MsaG039902	0.823141	2.868058e-53	6.858894e-51
MsaG017431	MsaG039902	0.836883	1.319871e-56	4.678257e-54
MsaG017644	MsaG039902	0.838135	6.325995e-57	2.329767e-54
MsaG017699	MsaG039902	0.816692	8.426965e-52	1.700579e-49
MsaG017719	MsaG039902	0.806398	1.421902e-49	2.227536e-47
MsaG017828	MsaG039902	0.820170	1.384189e-52	3.058226e-50
MsaG017954	MsaG039902	0.822644	3.740202e-53	8.825238e-51
MsaG017983	MsaG039902	0.820380	1.239546e-52	2.753838e-50
MsaG018025	MsaG039902	0.843997	1.855512e-58	8.225816e-56
MsaG018078	MsaG039902	0.803728	5.114024e-49	7.527884e-47
MsaG018116	MsaG039902	0.815505	1.547403e-51	3.029618e-49
MsaG018223	MsaG039902	0.801737	1.311419e-48	1.844135e-46
MsaG018269	MsaG039902	0.829285	1.006005e-54	2.852255e-52
MsaG019120	MsaG039902	0.829270	1.014188e-54	2.874208e-52
MsaG019171	MsaG039902	0.800141	2.768529e-48	3.755077e-46
MsaG019526	MsaG039902	0.832918	1.301682e-55	4.099340e-53
MsaG019649	MsaG039902	0.888794	9.411566e-73	2.605280e-69
MsaG019770	MsaG039902	0.802225	1.041838e-48	1.481419e-46
MsaG019910	MsaG039902	0.810603	1.817590e-50	3.149859e-48
MsaG019907	MsaG039902	0.803512	5.667082e-49	8.300232e-47
MsaG020371	MsaG039902	0.819699	1.772401e-52	3.866972e-50
MsaG020430	MsaG039902	0.806281	1.504041e-49	2.349758e-47
MsaG020550	MsaG039902	0.863507	4.711070e-64	4.194605e-61
MsaG020733	MsaG039902	0.819263	2.224884e-52	4.799387e-50
MsaG021683	MsaG039902	0.834893	4.194880e-56	1.400641e-53
MsaG021693	MsaG039902	0.850494	3.120148e-60	1.720062e-57
MsaG023188	MsaG039902	0.803859	4.805112e-49	7.094473e-47
MsaG023563	MsaG039902	0.819743	1.731896e-52	3.782932e-50
MsaG023626	MsaG039902	0.828636	1.442201e-54	4.014900e-52
MsaG023649	MsaG039902	0.812659	6.524975e-51	1.189404e-48
MsaG023861	MsaG039902	0.801954	1.184220e-48	1.673490e-46
MsaG026607	MsaG039902	0.823113	2.912305e-53	6.959352e-51
MsaG026686	MsaG039902	0.849018	8.027986e-60	4.207881e-57
MsaG026786	MsaG039902	0.852630	7.805472e-61	4.635351e-58
MsaG027198	MsaG039902	0.822922	3.224091e-53	7.664920e-51
MsaG027210	MsaG039902	0.803137	6.768393e-49	9.827998e-47
MsaG027376	MsaG039902	0.826877	3.798206e-54	1.006515e-51
MsaG027483	MsaG039902	0.806423	1.404477e-49	2.201594e-47
MsaG027885	MsaG039902	0.825994	6.153063e-54	1.590991e-51
MsaG028277	MsaG039902	0.856969	4.368230e-62	3.031312e-59
MsaG028450	MsaG039902	0.851108	2.100787e-60	1.182905e-57
MsaG028531	MsaG039902	0.843509	2.503133e-58	1.092567e-55
MsaG028658	MsaG039902	0.852426	8.920641e-61	5.260192e-58
MsaG029546	MsaG039902	0.807720	7.487772e-50	1.210379e-47
MsaG029953	MsaG039902	0.825021	1.043248e-53	2.625885e-51
MsaG031248	MsaG039902	0.837869	7.398236e-57	2.702396e-54
MsaG032616	MsaG039902	0.800033	2.911612e-48	3.939602e-46
MsaG032901	MsaG039902	0.843809	2.082259e-58	9.175853e-56
MsaG033309	MsaG039902	0.838879	4.074742e-57	1.535924e-54
MsaG033991	MsaG039902	0.806865	1.134066e-49	1.796227e-47
MsaG034047	MsaG039902	0.864748	1.940808e-64	1.815205e-61
MsaG034217	MsaG039902	0.806462	1.378597e-49	2.163025e-47
MsaG039468	MsaG039902	0.806192	1.570381e-49	2.448166e-47
MsaG039902	MsaG039981	0.813567	4.133872e-51	7.708675e-49
MsaG039902	MsaG040013	0.800644	2.189117e-48	3.003230e-46
MsaG039902	MsaG040134	0.815176	1.829180e-51	3.551686e-49
MsaG039902	MsaG040270	0.819769	1.708177e-52	3.733764e-50
MsaG039902	MsaG040504	0.809372	3.336025e-50	5.611193e-48
MsaG039902	MsaG040569	0.837836	7.544341e-57	2.752971e-54
MsaG039902	MsaG040713	0.804834	3.016062e-49	4.555036e-47
MsaG039902	MsaG041237	0.828600	1.471054e-54	4.091158e-52
MsaG039902	MsaG041721	0.853747	3.749391e-61	2.316334e-58
MsaG039902	MsaG041800	0.841589	8.045950e-58	3.302358e-55
MsaG039902	MsaG043371	0.821998	5.274600e-53	1.223139e-50
MsaG039902	MsaG043817	0.816055	1.168128e-51	2.319245e-49
MsaG039902	MsaG044200	0.861694	1.692680e-63	1.403778e-60
MsaG039902	MsaG044661	0.820126	1.416324e-52	3.125532e-50
MsaG039902	MsaG044808	0.817839	4.665551e-52	9.697603e-50
MsaG039902	MsaG045276	0.829558	8.639414e-55	2.468935e-52
MsaG039902	MsaG045284	0.810341	2.068717e-50	3.562445e-48
MsaG039902	MsaG045832	0.804745	3.148190e-49	4.744627e-47
MsaG039902	MsaG046155	0.826368	5.017310e-54	1.310845e-51
MsaG039902	MsaG046173	0.826529	4.594575e-54	1.205792e-51
MsaG039902	MsaG046266	0.878928	3.966390e-69	6.813823e-66
MsaG039902	MsaG046306	0.852007	1.172239e-60	6.811835e-58
MsaG039902	MsaG046364	0.834561	5.080186e-56	1.679452e-53
MsaG039902	MsaG046436	0.812764	6.188521e-51	1.131042e-48
MsaG039902	MsaG046501	0.813621	4.022996e-51	7.511904e-49
MsaG039902	MsaG046503	0.838353	5.559966e-57	2.061497e-54
MsaG039902	MsaG046603	0.854827	1.834619e-61	1.177865e-58
MsaG039902	MsaG047097	0.831761	2.509176e-55	7.640754e-53
MsaG039902	MsaG002309	0.826127	5.721725e-54	1.484981e-51
MsaG039902	MsaG001949	0.816792	8.002749e-52	1.619182e-49
MsaG039902	MsaG003540	0.810125	2.302035e-50	3.943151e-48
MsaG039902	MsaG005167	0.802518	9.072584e-49	1.298787e-46
MsaG039902	MsaG002617	0.805205	2.524984e-49	3.846320e-47
MsaG039902	MsaG007986	0.804558	3.441914e-49	5.164896e-47
MsaG039902	MsaG012344	0.832796	1.394809e-55	4.376827e-53
MsaG039902	MsaG012729	0.813021	5.439997e-51	1.000663e-48
MsaG039902	MsaG014052	0.855018	1.615671e-61	1.044414e-58
MsaG039902	MsaG023179	0.802750	8.130136e-49	1.170023e-46
MsaG039902	MsaG020399	0.811180	1.364864e-50	2.398916e-48
MsaG039902	MsaG020128	0.801886	1.222437e-48	1.724902e-46
MsaG039902	MsaG022828	0.825411	8.444285e-54	2.148287e-51
MsaG039902	MsaG027639	0.806095	1.645683e-49	2.559625e-47
MsaG039902	MsaG026803	0.803199	6.574475e-49	9.560018e-47
MsaG039902	MsaG033602	0.816212	1.077721e-51	2.148391e-49
MsaG039902	MsaG033146	0.819303	2.180032e-52	4.707393e-50
MsaG039902	MsaG031662	0.839794	2.363453e-57	9.166977e-55
MsaG039902	MsaG031186	0.812827	5.995952e-51	1.097580e-48
MsaG039902	MsaG033082	0.810432	1.977897e-50	3.413596e-48
MsaG039902	MsaG032525	0.821702	6.172086e-53	1.420029e-50
MsaG039902	MsaG032799	0.842973	3.473641e-58	1.490283e-55
MsaG039902	MsaG032718	0.826785	3.995944e-54	1.056133e-51
MsaG039902	MsaG032252	0.802408	9.557929e-49	1.364815e-46
MsaG039902	MsaG031847	0.821865	5.659527e-53	1.307761e-50
MsaG039902	MsaG033259	0.821269	7.761749e-53	1.765418e-50
MsaG039902	MsaG030744	0.804382	3.744364e-49	5.595864e-47
MsaG039902	MsaG036760	0.819371	2.102899e-52	4.549086e-50
MsaG039902	MsaG038885	0.836378	1.772618e-56	6.188552e-54
MsaG039902	MsaG036286	0.815880	1.277230e-51	2.524662e-49
MsaG039902	MsaG035600	0.812095	8.651872e-51	1.555156e-48
MsaG039902	MsaG037155	0.876870	2.063583e-68	3.226048e-65
MsaG039902	MsaG037531	0.828472	1.579375e-54	4.376792e-52
MsaG039902	MsaG036685	0.807234	9.482442e-50	1.515025e-47
MsaG039902	MsaG039797	0.813338	4.639200e-51	8.601145e-49
MsaG039902	MsaG035545	0.878183	7.234368e-69	1.200812e-65
MsaG039902	MsaG036758	0.813570	4.128058e-51	7.698325e-49
MsaG039902	MsaG043366	0.821184	8.115426e-53	1.841730e-50
MsaG039902	MsaG041727	0.816362	9.982248e-52	1.997505e-49
MsaG039902	MsaG041442	0.833238	1.084408e-55	3.447472e-53
MsaG039902	MsaG044977	0.808337	5.541050e-50	9.090568e-48
MsaG039902	MsaG044531	0.802393	9.627351e-49	1.374248e-46
MsaG039902	MsaG042876	0.858514	1.528146e-62	1.123377e-59
MsaG039902	MsaG043822	0.851634	1.493857e-60	8.565975e-58

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039902	MtrunA17_Chr7g0263601	98.742	159	0	1	1	157	1	159	3.81e-115	323
MsaG039902	MtrunA17_Chr1g0185911	74.675	154	28	4	12	158	11	160	4.06e-76	224
MsaG039902	MtrunA17_Chr3g0102351	72.308	130	27	3	9	137	13	134	2.48e-59	182
MsaG039902	MtrunA17_Chr2g0290491	71.311	122	26	1	1	122	1	113	2.75e-59	182
MsaG039902	MtrunA17_Chr5g0446491	72.951	122	27	2	10	129	9	126	4.37e-58	179
MsaG039902	MtrunA17_Chr8g0382931	78.095	105	23	0	11	115	13	117	3.08e-56	175
MsaG039902	MtrunA17_Chr8g0384451	79.121	91	19	0	25	115	39	129	7.18e-53	167
MsaG039902	MtrunA17_Chr4g0076321	70.588	102	30	0	14	115	7	108	1.15e-48	154
MsaG039902	MtrunA17_Chr1g0195851	69.792	96	29	0	24	119	34	129	1.77e-48	155
MsaG039902	MtrunA17_Chr2g0296321	55.372	121	49	1	24	144	64	179	2.90e-47	154
MsaG039902	MtrunA17_Chr4g0076381	50.704	142	68	1	24	163	56	197	6.92e-47	152
MsaG039902	MtrunA17_Chr4g0067091	62.617	107	38	1	9	115	7	111	7.15e-46	149
MsaG039902	MtrunA17_Chr1g0165041	64.894	94	33	0	24	117	4	97	1.23e-45	148
MsaG039902	MtrunA17_Chr1g0191981	46.667	120	62	1	26	143	4	123	4.01e-37	124
MsaG039902	MtrunA17_Chr1g0159271	50.000	82	41	0	40	121	1	82	9.11e-25	92.4
MsaG039902	MtrunA17_Chr5g0446601	40.741	108	63	1	14	120	11	118	2.63e-21	85.9
MsaG039902	MtrunA17_Chr1g0158951	44.565	92	38	1	56	134	19	110	8.35e-20	79.7
MsaG039902	MtrunA17_Chr2g0307551	32.110	109	74	0	27	135	12	120	1.18e-18	78.2
MsaG039902	MtrunA17_Chr1g0159291	40.789	76	45	0	31	106	7	82	1.63e-18	75.9
MsaG039902	MtrunA17_Chr4g0062271	32.039	103	70	0	27	129	12	114	4.29e-16	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039902	AT2G37060.2	74.850	167	27	7	1	158	1	161	5.85e-79	232
MsaG039902	AT2G37060.3	74.850	167	27	7	1	158	1	161	5.85e-79	232
MsaG039902	AT2G37060.1	74.850	167	27	7	1	158	1	161	5.85e-79	232
MsaG039902	AT3G53340.5	77.551	147	26	4	17	157	19	164	5.99e-76	224
MsaG039902	AT3G53340.1	77.551	147	26	4	17	157	19	164	5.99e-76	224
MsaG039902	AT2G38880.7	76.923	130	25	1	1	130	1	125	1.01e-70	210
MsaG039902	AT2G38880.3	75.758	132	25	2	1	130	1	127	8.04e-69	205
MsaG039902	AT2G38880.2	75.758	132	25	2	1	130	1	127	1.07e-68	205
MsaG039902	AT2G38880.1	75.758	132	25	2	1	130	1	127	1.07e-68	205
MsaG039902	AT2G38880.5	75.758	132	25	2	1	130	1	127	1.07e-68	205
MsaG039902	AT3G53340.3	85.849	106	14	1	17	121	19	124	2.67e-65	197
MsaG039902	AT3G53340.2	85.849	106	14	1	17	121	19	124	2.67e-65	197
MsaG039902	AT2G38880.11	64.516	155	25	2	1	130	1	150	9.89e-65	196
MsaG039902	AT2G38880.8	64.516	155	25	2	1	130	1	150	9.89e-65	196
MsaG039902	AT2G38880.4	79.130	115	19	1	1	115	1	110	1.54e-64	193
MsaG039902	AT2G38880.9	79.130	115	19	1	1	115	1	110	4.50e-64	194
MsaG039902	AT2G38880.10	79.130	115	19	1	1	115	1	110	4.50e-64	194
MsaG039902	AT2G38880.6	79.130	115	19	1	1	115	1	110	4.50e-64	194
MsaG039902	AT3G53340.4	89.000	100	10	1	17	115	19	118	5.68e-64	192
MsaG039902	AT4G14540.1	80.952	105	18	1	13	115	6	110	1.68e-59	182
MsaG039902	AT5G47640.1	85.714	91	13	0	25	115	26	116	1.69e-56	176
MsaG039902	AT2G13570.1	79.167	96	18	1	25	120	35	128	3.46e-54	171
MsaG039902	AT2G47810.1	65.741	108	34	2	24	128	49	156	2.65e-47	151
MsaG039902	AT5G47670.2	61.682	107	39	1	24	128	27	133	1.54e-46	151
MsaG039902	AT5G47670.1	61.682	107	39	1	24	128	56	162	3.85e-46	151
MsaG039902	AT5G47670.3	61.682	107	39	1	24	128	56	162	3.85e-46	151
MsaG039902	AT1G21970.1	51.538	130	59	2	1	126	31	160	2.84e-45	149
MsaG039902	AT1G09030.1	50.000	134	56	3	26	148	3	136	6.11e-43	140
MsaG039902	AT5G23090.4	35.644	101	59	2	27	123	12	110	1.93e-17	75.1
MsaG039902	AT5G08190.2	34.653	101	60	2	27	123	12	110	7.29e-17	73.9
MsaG039902	AT5G08190.1	37.500	80	50	0	27	106	12	91	9.92e-17	73.6
MsaG039902	AT5G23090.5	38.462	78	48	0	27	104	12	89	1.68e-16	72.8
MsaG039902	AT5G23090.2	38.462	78	48	0	27	104	12	89	1.68e-16	72.8
MsaG039902	AT5G23090.1	38.462	78	48	0	27	104	12	89	1.68e-16	72.8
MsaG039902	AT5G23090.3	38.710	62	38	0	43	104	15	76	7.01e-12	60.5

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTGGGCGATGGCTACTTT+AGG	0.202896	7:+94308087	MsaT039902.1:CDS
AACGGTTTCCTTAGCATCTT+TGG	0.251977	7:-94307888	None:intergenic
TTTGGGCGATGGCTACTTTA+GGG	0.280322	7:+94308088	MsaT039902.1:CDS
CTTTCGTGGCTGCCGCCGCC+AGG	0.317211	7:-94307758	None:intergenic
GCCAGGACTCGCCGGAGTTT+CGG	0.338910	7:-94307741	None:intergenic
TAACGGTGATGATTTGCTTT+GGG	0.394165	7:+94308071	MsaT039902.1:CDS
GCCAGATGTGTCTCCACCCT+TGG	0.406781	7:-94308709	None:intergenic
TCCGAAACTCCGGCGAGTCC+TGG	0.416968	7:+94307740	MsaT039902.1:CDS
TTAACGGTGATGATTTGCTT+TGG	0.430649	7:+94308070	MsaT039902.1:CDS
GGTGTTTCAGGGTGATACTA+AGG	0.432945	7:+94308680	MsaT039902.1:intron
AGATGCTAAGGAAACCGTTC+AGG	0.443640	7:+94307892	MsaT039902.1:CDS
GAGAAGAGGAAGACGATTAA+CGG	0.446276	7:+94308054	MsaT039902.1:CDS
GACTGTGTTCGCCGCTTTCG+TGG	0.449949	7:-94307772	None:intergenic
GATGGCTACTTTAGGGTTTG+AGG	0.453692	7:+94308095	MsaT039902.1:CDS
GCCAAGGGTGGAGACACATC+TGG	0.461100	7:+94308708	MsaT039902.1:CDS
ACGGTCTTGTTCACGGATGT+TGG	0.478749	7:-94307801	None:intergenic
TAACCTCTCTGTATCTTGTA+AGG	0.479347	7:-94308143	None:intergenic
TGATGATTTGCTTTGGGCGA+TGG	0.479911	7:+94308077	MsaT039902.1:CDS
CATCAAGGTTCTTTCTCACA+AGG	0.487515	7:+94308886	MsaT039902.1:CDS
CTGCCGCCGCCAGGACTCGC+CGG	0.499622	7:-94307749	None:intergenic
TGTTTCCTACACAAATTCTC+AGG	0.502672	7:+94308909	MsaT039902.1:CDS
AAATTGCAGCTTGTTCATCA+AGG	0.514442	7:+94308871	MsaT039902.1:intron
TGATACTAAGGGCTCTGCCA+AGG	0.527179	7:+94308692	MsaT039902.1:CDS
CACTACTCTCTAAAATGCTA+AGG	0.528875	7:+94308935	MsaT039902.1:CDS
TCAACAAGGTTCTAATCCTC+AGG	0.530968	7:+94308743	MsaT039902.1:CDS
GAAGGAAACGGTCTTGTTCA+CGG	0.533282	7:-94307808	None:intergenic
GGCGGCGGCAGCCACGAAAG+CGG	0.544156	7:+94307761	MsaT039902.1:CDS
GATACTAAGGGCTCTGCCAA+GGG	0.547138	7:+94308693	MsaT039902.1:CDS
CGACGATATGTCCGAAACTC+CGG	0.548200	7:+94307730	None:intergenic
CTTGTAAGGTAAATCTTAAG+AGG	0.551310	7:-94308129	None:intergenic
GTGTTTCAGGGTGATACTAA+GGG	0.557727	7:+94308681	MsaT039902.1:intron
ACTCCGGCGAGTCCTGGCGG+CGG	0.562769	7:+94307746	MsaT039902.1:CDS
TGTTAGCGATAGGAAGGAAA+CGG	0.567517	7:-94307820	None:intergenic
TAAAATCGCCAAAGATGCTA+AGG	0.569776	7:+94307880	MsaT039902.1:CDS
ATAAGTGTCAGAGAGAGAAG+AGG	0.595900	7:+94308040	MsaT039902.1:CDS
GGTGATGAAGCTGATGAACT+CGG	0.601461	7:-94307924	None:intergenic
GGCTGATGTTAGCGATAGGA+AGG	0.601546	7:-94307826	None:intergenic
CTCTCTCTGACACTTATCAG+AGG	0.607674	7:-94308034	None:intergenic
CTCGGAGACACATTCCTGAA+CGG	0.614495	7:-94307906	None:intergenic
ACTAAGGGCTCTGCCAAGGG+TGG	0.614551	7:+94308696	MsaT039902.1:CDS
ATGCGGCTGATGTTAGCGAT+AGG	0.621968	7:-94307830	None:intergenic
GAAACTCCGGCGAGTCCTGG+CGG	0.650343	7:+94307743	MsaT039902.1:CDS
TGTTACCTGAGAATTTGTGT+AGG	0.662155	7:-94308914	None:intergenic
TGTTCACGGATGTTGGAACG+AGG	0.689840	7:-94307794	None:intergenic
TTACCTTACAAGATACAGAG+AGG	0.715766	7:+94308140	MsaT039902.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	94307737	94308969	94307737	ID=MsaG039902
Chr7	mRNA	94307737	94308969	94307737	ID=MsaT039902.1;Parent=MsaG039902
Chr7	exon	94307737	94307951	94307737	ID=MsaT039902.1.exon1;Parent=MsaT039902.1
Chr7	CDS	94307737	94307951	94307737	ID=cds.MsaT039902.1;Parent=MsaT039902.1
Chr7	exon	94308032	94308161	94308032	ID=MsaT039902.1.exon2;Parent=MsaT039902.1
Chr7	CDS	94308032	94308161	94308032	ID=cds.MsaT039902.1;Parent=MsaT039902.1
Chr7	exon	94308690	94308764	94308690	ID=MsaT039902.1.exon3;Parent=MsaT039902.1
Chr7	CDS	94308690	94308764	94308690	ID=cds.MsaT039902.1;Parent=MsaT039902.1
Chr7	exon	94308880	94308969	94308880	ID=MsaT039902.1.exon4;Parent=MsaT039902.1
Chr7	CDS	94308880	94308969	94308880	ID=cds.MsaT039902.1;Parent=MsaT039902.1

Gene Sequence

>MsaT039902.1

ATGTCCGAAACTCCGGCGAGTCCTGGCGGCGGCAGCCACGAAAGCGGCGAACACAGTCCTCGTTCCAACATCCGTGAACAAGACCGTTTCCTTCCTATCGCTAACATCAGCCGCATCATGAAAAAAGCTCTTCCTGCTAATGGTAAAATCGCCAAAGATGCTAAGGAAACCGTTCAGGAATGTGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCGATGGCTACTTTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGGGTGATACTAAGGGCTCTGCCAAGGGTGGAGACACATCTGGCAAAAAAGATGTTCAACAAGGTTCTAATCCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCCTACACAAATTCTCAGGTAACACTACTCTCTAAAATGCTAAGGCTGTTGTATTGA

Protein sequence

>MsaT039902.1

MSETPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSGKKDVQQGSNPQLVHQGSFSQGVSYTNSQVTLLSKMLRLLY*