AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039917


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039917 MtrunA17_Chr7g0263831 94.048 84 5 0 1 84 1 84 1.02e-30 103
MsaG039917 MtrunA17_Chr7g0263871 89.474 76 3 1 9 84 3 73 1.30e-17 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039917 AT2G37120.1 77.778 63 14 0 22 84 14 76 2.54e-15 64.7
MsaG039917 AT3G53370.1 78.333 60 13 0 25 84 17 76 6.72e-13 58.5

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATAGTTCTCCTGGTTAT+TGG 0.281375 7:-94428869 MsaT039917.1:CDS
TGGGGAAATGTTTAGAAAGC+TGG 0.417081 7:-94428914 MsaT039917.1:intron
GTCTCTGCACCTGGAGAGTA+GGG 0.431630 7:-94428719 None:intergenic
GTCCATTGCCCCTACTCTCC+AGG 0.446840 7:+94428710 None:intergenic
ATGGCCGATGACTTTGAATT+CGG 0.448197 7:-94429267 MsaT039917.1:CDS
ACCAGGAGAACTATTAAGCC+TGG 0.450176 7:+94428875 None:intergenic
TTGCTGTTGACATTCCTCAT+AGG 0.463310 7:-94428842 MsaT039917.1:CDS
CCCAGGCTTAATAGTTCTCC+TGG 0.470539 7:-94428876 MsaT039917.1:CDS
ATAGTTCTCCTGGTTATTGG+TGG 0.478741 7:-94428866 MsaT039917.1:CDS
GTTTAGAAAGCTGGATCTCA+AGG 0.480415 7:-94428905 MsaT039917.1:intron
TCCTCCTTCCTTTGATCGCA+TGG 0.481901 7:-94429235 MsaT039917.1:intron
TAGTTCTCCTGGTTATTGGT+GGG 0.495632 7:-94428865 MsaT039917.1:CDS
AAGCAAGGAGTCTCTGCACC+TGG 0.523372 7:-94428728 MsaT039917.1:CDS
AGTCTCTGCACCTGGAGAGT+AGG 0.526480 7:-94428720 None:intergenic
GAAGAGTACCATGCGATCAA+AGG 0.548062 7:+94429227 None:intergenic
GAATTCAAAGTCATCGGCCA+TGG 0.568004 7:+94429269 None:intergenic
AGAGTGCATAATTTCCTATG+AGG 0.578802 7:+94428828 None:intergenic
ATCACCGAATTCAAAGTCAT+CGG 0.579370 7:+94429263 None:intergenic
CCAGGAGAACTATTAAGCCT+GGG 0.597197 7:+94428876 None:intergenic
ACAGCAACCCACCAATAACC+AGG 0.598951 7:+94428858 None:intergenic
TTTAGAAAGCTGGATCTCAA+GGG 0.612528 7:-94428904 MsaT039917.1:intron
AGTACCATGCGATCAAAGGA+AGG 0.619049 7:+94429231 None:intergenic
GGATCTCAAGGGTTCAACCC+AGG 0.620507 7:-94428893 MsaT039917.1:CDS
ACCATGCGATCAAAGGAAGG+AGG 0.683503 7:+94429234 None:intergenic
TCTCTGCACCTGGAGAGTAG+GGG 0.689358 7:-94428718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 94428721 94429289 94428721 ID=MsaG039917
Chr7 mRNA 94428721 94429289 94428721 ID=MsaT039917.1;Parent=MsaG039917
Chr7 exon 94428721 94428921 94428721 ID=MsaT039917.1.exon2;Parent=MsaT039917.1
Chr7 CDS 94428721 94428921 94428721 ID=cds.MsaT039917.1;Parent=MsaT039917.1
Chr7 exon 94429236 94429289 94429236 ID=MsaT039917.1.exon1;Parent=MsaT039917.1
Chr7 CDS 94429236 94429289 94429236 ID=cds.MsaT039917.1;Parent=MsaT039917.1
Gene Sequence

>MsaT039917.1

ATGGCCGATGACTTTGAATTCGGTGATAAAGTTCCTCCTTCCTTTGATCGCATGAAAGCTGGATCTCAAGGGTTCAACCCAGGCTTAATAGTTCTCCTGGTTATTGGTGGGTTGCTGTTGACATTCCTCATAGGAAATTATGCACTCTACGTTTATGCACAGAAGACCCTCCCTCCTAGAAAAAAGAAGCCACTCTCAAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGAGTCTCTGCACCTGGAGAGTAG

Protein sequence

>MsaT039917.1

MADDFEFGDKVPPSFDRMKAGSQGFNPGLIVLLVIGGLLLTFLIGNYALYVYAQKTLPPRKKKPLSKKKMKKERLKQGVSAPGE*