AlfalfaGEDB | MsaG039942

M. sativa ssp. caerulea / MsaG039942

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039942	KEH17132.1	82.798	436	42	5	42	463	1	417	0.0	723

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039942	sp\|Q653H7\|ARFR_ORYSJ	49.869	383	156	7	13	363	3	381	1.29e-114	355

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039942	tr\|A0A072TI81\|A0A072TI81_MEDTR	82.798	436	42	5	42	463	1	417	0.0	723

TFs/TRs:

Gene ID	Type	Classification
MsaG039942	TF	B3-ARF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003292	MsaG039942	0.816158	1.107878e-51	2.205518e-49
MsaG003740	MsaG039942	0.811233	1.329547e-50	2.339883e-48
MsaG003769	MsaG039942	0.810853	1.605622e-50	2.799562e-48
MsaG004669	MsaG039942	0.823255	2.699103e-53	6.474869e-51
MsaG005455	MsaG039942	0.817690	5.038012e-52	1.043141e-49
MsaG005524	MsaG039942	0.815380	1.649093e-51	3.218678e-49
MsaG005574	MsaG039942	0.832040	2.143421e-55	6.580017e-53
MsaG006156	MsaG039942	0.811637	1.087373e-50	1.932710e-48
MsaG006544	MsaG039942	0.824498	1.384374e-53	3.434984e-51
MsaG010631	MsaG039942	0.807974	6.616582e-50	1.076087e-47
MsaG010703	MsaG039942	0.815629	1.452280e-51	2.852485e-49
MsaG011578	MsaG039942	0.807252	9.401506e-50	1.502736e-47
MsaG011657	MsaG039942	0.806115	1.630105e-49	2.536578e-47
MsaG011918	MsaG039942	0.801875	1.228932e-48	1.733595e-46
MsaG045254	MsaG039942	0.810697	1.735148e-50	3.013841e-48
MsaG045309	MsaG039942	0.806013	1.711719e-49	2.657105e-47
MsaG045515	MsaG039942	0.808900	4.206448e-50	6.995460e-48
MsaG045550	MsaG039942	0.800902	1.940557e-48	2.677642e-46
MsaG046263	MsaG039942	0.805178	2.557899e-49	3.894073e-47
MsaG002238	MsaG039942	0.851967	1.203278e-60	6.982373e-58
MsaG002372	MsaG039942	0.810100	2.330924e-50	3.990271e-48
MsaG001709	MsaG039942	0.807249	9.413179e-50	1.504504e-47
MsaG004869	MsaG039942	0.814410	2.699526e-51	5.141555e-49
MsaG019334	MsaG039942	0.826439	4.826874e-54	1.263659e-51
MsaG020251	MsaG039942	0.801346	1.575796e-48	2.196326e-46
MsaG034393	MsaG039942	0.829588	8.498894e-55	2.430847e-52
MsaG032019	MsaG039942	0.816329	1.015056e-51	2.029517e-49
MsaG036262	MsaG039942	0.803100	6.889037e-49	9.994711e-47
MsaG039942	MsaG043234	0.802275	1.017840e-48	1.448956e-46
MsaG015329	MsaG039942	0.808146	6.082535e-50	9.933298e-48
MsaG016390	MsaG039942	0.814697	2.333957e-51	4.477310e-49
MsaG017406	MsaG039942	0.828617	1.456867e-54	4.053652e-52
MsaG017724	MsaG039942	0.831341	3.181398e-55	9.568262e-53
MsaG017801	MsaG039942	0.827304	3.005663e-54	8.060413e-52
MsaG017905	MsaG039942	0.818476	3.352867e-52	7.084623e-50
MsaG018062	MsaG039942	0.802544	8.961858e-49	1.283699e-46
MsaG018368	MsaG039942	0.806454	1.383954e-49	2.171001e-47
MsaG018920	MsaG039942	0.800663	2.169880e-48	2.978125e-46
MsaG018922	MsaG039942	0.806761	1.192667e-49	1.884495e-47
MsaG019501	MsaG039942	0.802819	7.870103e-49	1.134386e-46
MsaG019492	MsaG039942	0.811741	1.032696e-50	1.840208e-48
MsaG020206	MsaG039942	0.800060	2.874178e-48	3.891411e-46
MsaG020326	MsaG039942	0.802905	7.557548e-49	1.091489e-46
MsaG020365	MsaG039942	0.808284	5.686154e-50	9.316972e-48
MsaG020443	MsaG039942	0.827686	2.436749e-54	6.605107e-52
MsaG020599	MsaG039942	0.833668	8.483308e-56	2.731133e-53
MsaG022584	MsaG039942	0.830167	6.150644e-55	1.788559e-52
MsaG023731	MsaG039942	0.861608	1.798234e-63	1.486424e-60
MsaG026822	MsaG039942	0.826544	4.557419e-54	1.196531e-51
MsaG027830	MsaG039942	0.802601	8.726887e-49	1.251661e-46
MsaG028348	MsaG039942	0.805431	2.264810e-49	3.468104e-47
MsaG028607	MsaG039942	0.812018	8.992457e-51	1.613372e-48
MsaG028801	MsaG039942	0.826145	5.666288e-54	1.471331e-51
MsaG029443	MsaG039942	0.808482	5.161489e-50	8.497686e-48
MsaG029875	MsaG039942	0.802819	7.870103e-49	1.134386e-46
MsaG031612	MsaG039942	0.801683	1.344887e-48	1.888897e-46
MsaG033702	MsaG039942	0.829445	9.203429e-55	2.621504e-52
MsaG034409	MsaG039942	0.827582	2.579863e-54	6.972982e-52
MsaG035120	MsaG039942	0.809277	3.496058e-50	5.866766e-48
MsaG035122	MsaG039942	0.821614	6.464863e-53	1.483922e-50
MsaG036211	MsaG039942	0.802261	1.024298e-48	1.457691e-46
MsaG040366	MsaG039942	0.817630	5.196835e-52	1.074356e-49
MsaG040696	MsaG039942	0.801598	1.400112e-48	1.962630e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039942	MtrunA17_Chr7g0264171	83.969	393	31	3	1	363	1	391	0.0	678
MsaG039942	MtrunA17_Chr7g0264171	81.651	109	20	0	355	463	489	597	1.59e-52	186
MsaG039942	MtrunA17_Chr7g0264161	78.182	330	28	2	42	357	1	300	0.0	521
MsaG039942	MtrunA17_Chr1g0181211	55.135	370	133	9	24	363	18	384	4.81e-124	376
MsaG039942	MtrunA17_Chr1g0181211	42.017	119	56	5	356	463	484	600	6.33e-11	64.7
MsaG039942	MtrunA17_Chr2g0326761	52.893	363	146	4	23	363	1	360	6.16e-123	374
MsaG039942	MtrunA17_Chr1g0199681	52.846	369	134	7	24	363	85	442	2.57e-121	369
MsaG039942	MtrunA17_Chr4g0028971	50.829	362	147	7	30	363	9	367	1.58e-112	347
MsaG039942	MtrunA17_Chr3g0115271	41.389	360	177	7	29	363	15	365	1.90e-79	258
MsaG039942	MtrunA17_Chr5g0424931	36.740	362	168	11	28	357	14	346	6.24e-62	210
MsaG039942	MtrunA17_Chr1g0156321	35.616	365	169	10	26	363	36	361	3.38e-59	208
MsaG039942	MtrunA17_Chr8g0389081	37.960	353	158	8	30	357	29	345	6.73e-59	209
MsaG039942	MtrunA17_Chr4g0070181	34.375	352	174	7	28	357	18	334	2.28e-57	204
MsaG039942	MtrunA17_Chr2g0301251	35.227	352	171	7	28	357	18	334	7.09e-57	203
MsaG039942	MtrunA17_Chr2g0289221	35.028	354	154	11	30	357	17	320	7.10e-56	189
MsaG039942	MtrunA17_Chr4g0046371	34.930	355	171	9	29	356	34	355	6.49e-55	194
MsaG039942	MtrunA17_Chr5g0417281	33.604	369	168	11	28	371	6	322	1.01e-54	191
MsaG039942	MtrunA17_Chr2g0282961	34.770	348	176	7	29	356	49	365	1.13e-54	192
MsaG039942	MtrunA17_Chr2g0285461	34.857	350	171	9	28	354	18	333	3.20e-54	194
MsaG039942	MtrunA17_Chr5g0417211	31.850	427	205	12	30	421	9	384	7.25e-54	186
MsaG039942	MtrunA17_Chr5g0433301	35.429	350	169	9	28	354	19	334	1.66e-53	192
MsaG039942	MtrunA17_Chr8g0376771	34.286	350	172	10	28	354	18	332	9.42e-53	190
MsaG039942	MtrunA17_Chr3g0109391	35.613	351	167	10	28	354	21	336	1.22e-52	190
MsaG039942	MtrunA17_Chr2g0276781	34.444	360	180	8	25	363	15	339	3.03e-52	186
MsaG039942	MtrunA17_Chr4g0009751	31.591	421	215	9	31	429	17	386	2.14e-51	183
MsaG039942	MtrunA17_Chr8g0385791	35.345	348	166	10	33	357	59	370	9.19e-51	184
MsaG039942	MtrunA17_Chr4g0029671	34.473	351	173	7	33	356	54	374	1.55e-49	181
MsaG039942	MtrunA17_Chr5g0436761	33.803	355	164	9	28	357	7	315	2.60e-48	172
MsaG039942	MtrunA17_Chr2g0326281	33.516	364	172	10	33	356	56	389	4.40e-48	176
MsaG039942	MtrunA17_Chr1g0178011	31.429	350	181	8	28	357	7	317	6.58e-47	168
MsaG039942	MtrunA17_Chr7g0239061	33.239	352	178	10	33	363	14	329	7.15e-46	169
MsaG039942	MtrunA17_Chr8g0346711	34.844	353	170	10	27	357	23	337	9.63e-46	169
MsaG039942	MtrunA17_Chr2g0277461	30.946	349	177	10	30	357	10	315	7.90e-42	154
MsaG039942	MtrunA17_Chr2g0277531	30.398	352	170	13	30	357	17	317	1.15e-36	137
MsaG039942	MtrunA17_Chr5g0424801	27.171	357	180	12	30	357	9	314	5.83e-31	122
MsaG039942	MtrunA17_Chr5g0425261	26.119	402	205	14	30	390	9	359	2.65e-30	121
MsaG039942	MtrunA17_Chr5g0425661	31.188	202	107	4	29	207	33	225	7.13e-27	108
MsaG039942	MtrunA17_Chr8g0356211	30.000	240	136	7	127	365	2	210	2.27e-25	105
MsaG039942	MtrunA17_Chr5g0424741	25.225	444	239	16	28	413	7	415	5.69e-23	101
MsaG039942	MtrunA17_Chr5g0424791	31.373	153	90	5	65	215	12	151	1.11e-13	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039942	AT4G30080.1	52.941	357	145	8	28	363	14	368	7.21e-115	352
MsaG039942	AT2G28350.2	51.359	368	141	9	28	363	5	366	1.53e-111	343
MsaG039942	AT2G28350.1	51.359	368	141	9	28	363	5	366	3.42e-111	343
MsaG039942	AT1G77850.2	38.810	353	197	4	27	363	13	362	2.81e-75	247
MsaG039942	AT1G77850.1	38.810	353	197	4	27	363	13	362	3.28e-75	247
MsaG039942	AT1G19850.1	34.908	381	179	10	17	366	34	376	1.69e-56	201
MsaG039942	AT1G19850.2	34.908	381	179	10	17	366	23	365	1.80e-56	201
MsaG039942	AT1G19220.1	35.227	352	171	7	28	357	18	334	5.21e-56	201
MsaG039942	AT5G37020.2	35.328	351	168	10	28	354	17	332	2.27e-55	197
MsaG039942	AT5G37020.1	35.328	351	168	10	28	354	17	332	4.03e-55	197
MsaG039942	AT5G20730.2	33.424	368	188	7	12	357	3	335	2.20e-54	196
MsaG039942	AT5G20730.3	33.604	369	187	8	12	357	3	336	1.83e-53	194
MsaG039942	AT5G20730.1	33.604	369	187	8	12	357	3	336	2.19e-53	193
MsaG039942	AT1G59750.4	36.648	352	167	9	33	363	22	338	7.17e-53	188
MsaG039942	AT1G59750.2	36.648	352	167	9	33	363	22	338	8.30e-53	188
MsaG039942	AT1G59750.1	36.648	352	167	9	33	363	22	338	8.90e-53	188
MsaG039942	AT1G59750.3	36.648	352	167	9	33	363	22	338	8.90e-53	188
MsaG039942	AT1G30330.3	34.043	376	185	11	1	354	1	335	1.49e-52	190
MsaG039942	AT1G30330.2	34.043	376	185	11	1	354	1	335	1.49e-52	190
MsaG039942	AT1G30330.1	34.957	349	172	10	28	354	18	333	5.83e-52	189
MsaG039942	AT5G60450.2	33.967	368	184	10	24	364	32	367	6.42e-51	184
MsaG039942	AT5G60450.1	34.540	359	176	10	33	364	65	391	1.29e-50	184
MsaG039942	AT2G33860.1	34.393	346	172	11	33	356	54	366	5.89e-50	180
MsaG039942	AT5G62000.2	33.795	361	174	10	26	357	48	372	4.22e-49	180
MsaG039942	AT5G62000.5	33.795	361	174	10	26	357	48	372	4.22e-49	180
MsaG039942	AT5G62000.3	33.795	361	174	10	26	357	48	372	4.22e-49	180
MsaG039942	AT5G62000.1	33.795	361	174	10	26	357	48	372	4.22e-49	180
MsaG039942	AT5G62000.4	33.795	361	174	10	26	357	48	372	5.07e-49	180
MsaG039942	AT2G46530.1	30.713	407	199	10	33	410	21	373	1.01e-47	173
MsaG039942	AT2G46530.3	30.713	407	199	10	33	410	42	394	1.12e-47	174
MsaG039942	AT4G23980.2	33.144	353	177	9	33	363	12	327	1.37e-47	174
MsaG039942	AT4G23980.1	33.144	353	177	9	33	363	12	327	1.40e-47	174
MsaG039942	AT5G37020.3	40.336	238	109	6	119	354	31	237	1.45e-45	169
MsaG039942	AT3G61830.1	33.803	355	171	11	33	363	25	339	5.51e-45	166
MsaG039942	AT3G61830.2	35.505	307	154	8	61	363	22	288	9.99e-45	164
MsaG039942	AT1G35520.1	33.718	347	166	9	33	357	27	331	2.38e-42	158
MsaG039942	AT1G35240.1	33.141	347	168	9	33	357	27	331	3.82e-42	158
MsaG039942	AT1G34310.1	32.948	346	170	8	33	357	27	331	2.61e-41	155
MsaG039942	AT1G34410.1	33.811	349	163	10	33	357	27	331	4.77e-41	155
MsaG039942	AT2G33860.2	38.075	239	116	6	119	356	2	209	1.89e-40	150
MsaG039942	AT1G35540.1	33.333	345	170	10	33	357	27	331	5.81e-40	152
MsaG039942	AT2G46530.2	32.441	299	148	6	118	410	36	286	2.18e-39	149
MsaG039942	AT1G34390.1	32.754	345	170	9	33	357	27	329	6.68e-39	149
MsaG039942	AT1G34170.1	33.117	308	163	10	61	364	72	340	1.51e-35	138
MsaG039942	AT1G34170.2	31.494	308	142	10	61	364	72	314	6.69e-30	122
MsaG039942	AT1G34170.3	31.494	308	142	10	61	364	72	314	1.34e-29	122
MsaG039942	AT1G43950.1	38.608	158	88	4	61	218	74	222	4.16e-25	103
MsaG039942	ATMG00940.1	34.091	176	96	5	206	374	1	163	2.61e-18	82.4
MsaG039942	AT2G46870.1	34.211	114	69	2	111	219	27	139	1.77e-11	65.5

Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTATTCGCATTGGTTCTT+AGG	0.221784	7:+94751396	None:intergenic
CCTTTGTCAGGGTGGAAATT+TGG	0.238329	7:-94753271	MsaT039942.1:CDS
TGGAATGAAAGATGGAATTT+TGG	0.239959	7:+94753783	None:intergenic
CATCAACGTGTCTGAAATTA+AGG	0.241218	7:-94753641	MsaT039942.1:CDS
GCATTTCAGGCATGTTTATA+GGG	0.274751	7:-94753452	MsaT039942.1:CDS
TTTGTGAAAACTTCTTTAAT+TGG	0.290026	7:-94753016	MsaT039942.1:CDS
GGCATTTCAGGCATGTTTAT+AGG	0.293252	7:-94753453	MsaT039942.1:CDS
CAGTGTCAATTTGTATTGTT+TGG	0.297437	7:+94751517	None:intergenic
CGGAACTGTTGTTTCTGTTC+AGG	0.298883	7:-94752906	MsaT039942.1:CDS
TCGAGGATACGTTGGTTTAT+CGG	0.313865	7:-94752926	MsaT039942.1:CDS
ATGGTGAAAAGTGGCATTTC+AGG	0.316984	7:-94753465	MsaT039942.1:CDS
TGGAAATTTGGTAGTGGAAT+TGG	0.321491	7:-94753259	MsaT039942.1:CDS
CAGTTATGGCATGCCATTGC+AGG	0.355789	7:-94753907	MsaT039942.1:CDS
AAATGTTATTAAACGGTTGT+TGG	0.359013	7:+94751688	None:intergenic
TTGGAATTCGGAGGGCTAAA+AGG	0.363443	7:-94753315	MsaT039942.1:CDS
TTTGATAATGATGGTGTTGC+TGG	0.376636	7:-94753664	MsaT039942.1:CDS
AGTGACAAGAAACTTGCTTC+TGG	0.385156	7:-94753382	MsaT039942.1:CDS
CTAACTTGGTTAATATTCAT+AGG	0.385591	7:+94753688	None:intergenic
AAGAGGCATTTGTTGACAAC+TGG	0.392584	7:-94753421	MsaT039942.1:CDS
CGAAGAAATAAGAAAGGAAA+TGG	0.392883	7:-94753172	MsaT039942.1:CDS
AGTTTCTTGTCACTGACATA+TGG	0.394738	7:+94753391	None:intergenic
TACACAATCTTTAGAGAAAC+CGG	0.394786	7:-94751574	MsaT039942.1:CDS
AGAAGTCTCCACAGAGAATC+AGG	0.397029	7:+94752866	None:intergenic
GTTGGAGTCAATCCTTTGTC+AGG	0.400283	7:-94753283	MsaT039942.1:CDS
TTGGAATAGCACTTCAGATT+AGG	0.401876	7:-94752997	MsaT039942.1:CDS
GTGAACTTAATGTTGGAATT+CGG	0.402297	7:-94753327	MsaT039942.1:CDS
AGGTGCAACTGAGATGAATA+TGG	0.406992	7:-94753974	MsaT039942.1:CDS
ATTTGAAGCTATAAGATATA+TGG	0.407554	7:-94753755	MsaT039942.1:CDS
GCCATCTTGAACCTCATTCC+AGG	0.409391	7:+94752968	None:intergenic
TTAAACGGTTGTTGGAAACT+AGG	0.416552	7:+94751696	None:intergenic
ATTGTAGAAATGTTATTAAA+CGG	0.422394	7:+94751681	None:intergenic
GTGACAAGAAACTTGCTTCT+GGG	0.423889	7:-94753381	MsaT039942.1:CDS
ACTAATAAGCGATGGAATGA+TGG	0.428507	7:-94753146	MsaT039942.1:CDS
CTGCCAAAGTTTATTCGCAT+TGG	0.435780	7:+94751388	None:intergenic
TTCTCTGTGGAGACTTCTCC+AGG	0.441260	7:-94752861	MsaT039942.1:intron
AAAAGAAAAGGTTGCAATCC+AGG	0.441464	7:-94753994	MsaT039942.1:CDS
CGCCTAGCATGCATGTGAAC+CGG	0.448358	7:-94753824	MsaT039942.1:intron
CATCATTATCAAAACTAACT+TGG	0.449861	7:+94753674	None:intergenic
GTTGTCAACAAATGCCTCTT+CGG	0.456311	7:+94753424	None:intergenic
AATCTACATGGAATGAAAGA+TGG	0.473426	7:+94753775	None:intergenic
TGGTGCGGCTTTGCATGATC+CGG	0.483206	7:+94751555	None:intergenic
CGATGAGTCCTCAGTTTCAA+TGG	0.489284	7:+94752946	None:intergenic
GGATAATAAACCACATCAAA+CGG	0.491751	7:+94753061	None:intergenic
CTTCAGATTAGGTGGTGTCC+TGG	0.494054	7:-94752986	MsaT039942.1:CDS
GAAAACAGTGAACTTAATGT+TGG	0.494744	7:-94753334	MsaT039942.1:CDS
TTCAGGCTGCTGATCAGTCA+TGG	0.498485	7:-94752889	MsaT039942.1:CDS
GTGGTTTATTATCCTCGGTC+GGG	0.504235	7:-94753052	MsaT039942.1:CDS
TCAGGGTGGAAATTTGGTAG+TGG	0.505938	7:-94753265	MsaT039942.1:CDS
TTGATGTGGTTTATTATCCT+CGG	0.506306	7:-94753057	MsaT039942.1:CDS
CATCAGAGGAACGTGTCGGC+AGG	0.508244	7:+94751436	None:intergenic
GTTATTGAAGCAGCAAGACT+TGG	0.509000	7:-94753097	MsaT039942.1:CDS
CTTATAGCTTCAAATCTACA+TGG	0.517615	7:+94753763	None:intergenic
GAAACGTTCTCACTGGTGTT+CGG	0.522985	7:+94751621	None:intergenic
TTGTCTGATCTTCATCTACA+AGG	0.524873	7:-94751459	MsaT039942.1:CDS
ATATTCATCTCAGTTGCACC+TGG	0.525870	7:+94753976	None:intergenic
TTGGGATAGATGTCCTGAAA+AGG	0.529804	7:+94753496	None:intergenic
TTGCACCATTCCTCCTGCAA+TGG	0.544601	7:+94753894	None:intergenic
TGTGGTTTATTATCCTCGGT+CGG	0.545089	7:-94753053	MsaT039942.1:CDS
TGACAAGAAACTTGCTTCTG+GGG	0.545499	7:-94753380	MsaT039942.1:CDS
CCAAATTTCCACCCTGACAA+AGG	0.546733	7:+94753271	None:intergenic
AAGCGATGGAATGATGGGTA+GGG	0.546827	7:-94753140	MsaT039942.1:CDS
AAACTTCGAAGAAATAAGAA+AGG	0.548435	7:-94753178	MsaT039942.1:CDS
GAGTAAGCACTGAAATTCAC+CGG	0.548533	7:+94753805	None:intergenic
AGCGATGGAATGATGGGTAG+GGG	0.549768	7:-94753139	MsaT039942.1:CDS
GCTAAAAGGCGAAATAATGT+TGG	0.555377	7:-94753301	MsaT039942.1:CDS
CATTTCAGGCATGTTTATAG+GGG	0.556177	7:-94753451	MsaT039942.1:CDS
CTAATAAGCGATGGAATGAT+GGG	0.558503	7:-94753145	MsaT039942.1:CDS
AGCGTTTCGGCACAATATCT+AGG	0.559188	7:+94753550	None:intergenic
GCGATGGAATGATGGGTAGG+GGG	0.565339	7:-94753138	MsaT039942.1:CDS
GGCATTTGTTGACAACTGGA+TGG	0.569244	7:-94753417	MsaT039942.1:CDS
TTAGGTGGTGTCCTGGAATG+AGG	0.569864	7:-94752979	MsaT039942.1:CDS
AACTTAATGTTGGAATTCGG+AGG	0.572730	7:-94753324	MsaT039942.1:CDS
AGGATGTACATGGTGAAAAG+TGG	0.579569	7:-94753474	MsaT039942.1:CDS
AGAGTGTGGACCCTCAGTTA+TGG	0.579965	7:-94753921	MsaT039942.1:CDS
GAATAGCACTTCAGATTAGG+TGG	0.583504	7:-94752994	MsaT039942.1:CDS
TAAGCGATGGAATGATGGGT+AGG	0.583750	7:-94753141	MsaT039942.1:CDS
TAATATGCAGCCGTTTGATG+TGG	0.585844	7:-94753071	MsaT039942.1:CDS
GAGTTATTAGTGAGAGTCAT+CGG	0.590982	7:+94751657	None:intergenic
TCTGATGCAAACACTGGTGG+TGG	0.592766	7:-94753583	MsaT039942.1:CDS
ATCTATCCCAAGGATGTACA+TGG	0.592936	7:-94753484	MsaT039942.1:CDS
CGAGCACGAAACGTTCTCAC+TGG	0.593447	7:+94751614	None:intergenic
GGATAGATGTCCTGAAAAGG+AGG	0.594077	7:+94753499	None:intergenic
AATGGATTACTAATAAGCGA+TGG	0.596813	7:-94753154	MsaT039942.1:CDS
TTGGAGTCAATCCTTTGTCA+GGG	0.598239	7:-94753282	MsaT039942.1:CDS
GCATGCCATTGCAGGAGGAA+TGG	0.598837	7:-94753899	MsaT039942.1:CDS
CTAATAACTCGGCATTGCAA+AGG	0.603976	7:-94751644	MsaT039942.1:CDS
ATGAAGTGTATGCAAAACTC+AGG	0.607388	7:-94753717	MsaT039942.1:CDS
TCCTGGAATGAGGTTCAAGA+TGG	0.614384	7:-94752969	MsaT039942.1:CDS
TTTATAGGGGCACGCCGAAG+AGG	0.616360	7:-94753438	MsaT039942.1:CDS
GTTTGCATCAGATTGTGTCA+AGG	0.616878	7:+94753594	None:intergenic
CCACTCAAATCTCTCATCAG+AGG	0.617187	7:+94751422	None:intergenic
ACACAATCTGATGCAAACAC+TGG	0.627018	7:-94753589	MsaT039942.1:CDS
ACTTAATGTTGGAATTCGGA+GGG	0.629032	7:-94753323	MsaT039942.1:CDS
GATGACTCTCACTAATAACT+CGG	0.629448	7:-94751655	MsaT039942.1:CDS
TTATGGCATGCCATTGCAGG+AGG	0.637029	7:-94753904	MsaT039942.1:CDS
AGGACTCATCGAGGATACGT+TGG	0.639611	7:-94752934	MsaT039942.1:CDS
CTCTCATCAGAGGAACGTGT+CGG	0.642906	7:+94751432	None:intergenic
CAAGATGGCCATTGAAACTG+AGG	0.643200	7:-94752954	MsaT039942.1:CDS
CAATGGCATGCCATAACTGA+GGG	0.647143	7:+94753911	None:intergenic
GAGTCAATCCTTTGTCAGGG+TGG	0.657457	7:-94753279	MsaT039942.1:CDS
GCAATGGCATGCCATAACTG+AGG	0.666738	7:+94753910	None:intergenic
AGTCATGGCCTGATTCTCTG+TGG	0.672958	7:-94752874	MsaT039942.1:CDS
CAAACAATACAAATTGACAC+TGG	0.679693	7:-94751516	MsaT039942.1:CDS
CCTCTGATGAGAGATTTGAG+TGG	0.684336	7:-94751422	MsaT039942.1:CDS
AACTCAGGAGTACCCGACCG+AGG	0.690896	7:+94753040	None:intergenic
GATAGATGTCCTGAAAAGGA+GGG	0.691897	7:+94753500	None:intergenic
TTGAAACTGAGGACTCATCG+AGG	0.724347	7:-94752943	MsaT039942.1:CDS
CAATCTGATGCAAACACTGG+TGG	0.725224	7:-94753586	MsaT039942.1:CDS
TTAGCTGAATAGTCCAAACG+AGG	0.756003	7:+94753523	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	94751398	94754025	94751398	ID=MsaG039942
Chr7	mRNA	94751398	94754025	94751398	ID=MsaT039942.1;Parent=MsaG039942
Chr7	exon	94751398	94751718	94751398	ID=MsaT039942.1.exon4;Parent=MsaT039942.1
Chr7	CDS	94751398	94751718	94751398	ID=cds.MsaT039942.1;Parent=MsaT039942.1
Chr7	exon	94752862	94753205	94752862	ID=MsaT039942.1.exon3;Parent=MsaT039942.1
Chr7	CDS	94752862	94753205	94752862	ID=cds.MsaT039942.1;Parent=MsaT039942.1
Chr7	exon	94753254	94753839	94753254	ID=MsaT039942.1.exon2;Parent=MsaT039942.1
Chr7	CDS	94753254	94753839	94753254	ID=cds.MsaT039942.1;Parent=MsaT039942.1
Chr7	exon	94753885	94754025	94753885	ID=MsaT039942.1.exon1;Parent=MsaT039942.1
Chr7	CDS	94753885	94754025	94753885	ID=cds.MsaT039942.1;Parent=MsaT039942.1

Gene Sequence

>MsaT039942.1

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAGGTGCAACTGAGATGAATATGGAGTCAAAGAAGAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGTTATGGCATGCCATTGCAGGAGGAATGGTGCAAATGCCAGAACATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCATCTTTCATTCCATGTAGATTTGAAGCTATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACACTGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCCGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTTTTCAGGACATCTATCCCAAGGATGTACATGGTGAAAAGTGGCATTTCAGGCATGTTTATAGGGGCACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCATATGTCAGTGACAAGAAACTTGCTTCTGGGGATTCAATTGTGTTTTTGAGATCTGAAAACAGTGAACTTAATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCAATCCTTTGTCAGGGTGGAAATTTGGTAGTGGAATTGGAATTTATAATAAACTTCGAAGAAATAAGAAAGGAAATGGATTACTAATAAGCGATGGAATGATGGGTAGGGGGAAGGCGAAAGGTCTAGAAGTTATTGAAGCAGCAAGACTTGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCGGGTACTCCTGAGTTTTTTGTGAAAACTTCTTTAATTGGAATAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCGAGGATACGTTGGTTTATCGGAACTGTTGTTTCTGTTCAGGCTGCTGATCAGTCATGGCCTGATTCTCTGTGGAGACTTCTCCAGCCTAGTTTCCAACAACCGTTTAATAACATTTCTACAATGCCGATGACTCTCACTAATAACTCGGCATTGCAAAGGCCGAACACCAGTGAGAACGTTTCGTGCTCGCGTTCGATATCAACTTCTACACAATCTTTAGAGAAACCGGATCATGCAAAGCCGCACCAGCTCGTGCTTTTTGGCCAAACAATACAAATTGACACTGGAAGTGAAACTTCCGAGAAGAAAATGACTAATCATTTGTCTGATCTTCATCTACAAGGCCTGCCGACACGTTCCTCTGATGAGAGATTTGAGTGGAATCCTAAGAACCAATGCGAATAA

Protein sequence

>MsaT039942.1

MKEKRKGCNPGATEMNMESKKKLKNVNKSVDPQLWHAIAGGMVQMPEHACEPVNFSAYSKIPSFIPCRFEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANTGGGFSCPRYCAETLFPRLDYSANPPFQDIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPYVSDKKLASGDSIVFLRSENSELNVGIRRAKRRNNVGVNPLSGWKFGSGIGIYNKLRRNKKGNGLLISDGMMGRGKAKGLEVIEAARLGTNMQPFDVVYYPRSGTPEFFVKTSLIGIALQIRWCPGMRFKMAIETEDSSRIRWFIGTVVSVQAADQSWPDSLWRLLQPSFQQPFNNISTMPMTLTNNSALQRPNTSENVSCSRSISTSTQSLEKPDHAKPHQLVLFGQTIQIDTGSETSEKKMTNHLSDLHLQGLPTRSSDERFEWNPKNQCE*