AlfalfaGEDB | MsaG039945

M. sativa ssp. caerulea / MsaG039945

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039945	XP_024625181.1	94.839	620	30	2	1	619	1	619	0.0	1226

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039945	sp\|Q653H7\|ARFR_ORYSJ	50.528	568	253	12	11	563	3	557	0.0	535

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039945	tr\|Q2HV56\|Q2HV56_MEDTR	94.608	612	31	2	1	611	1	611	0.0	1211

TFs/TRs:

Gene ID	Type	Classification
MsaG039945	TF	B3-ARF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000402	MsaG039945	0.829672	8.109321e-55	2.324914e-52
MsaG000458	MsaG039945	0.815531	1.526372e-51	2.990493e-49
MsaG001273	MsaG039945	0.811820	9.924183e-51	1.771944e-48
MsaG002718	MsaG039945	0.805055	2.713259e-49	4.118763e-47
MsaG003072	MsaG039945	0.801580	1.411469e-48	1.977747e-46
MsaG003427	MsaG039945	0.804615	3.348608e-49	5.031464e-47
MsaG003503	MsaG039945	0.818031	4.222149e-52	8.819845e-50
MsaG003632	MsaG039945	0.802192	1.058284e-48	1.503660e-46
MsaG003836	MsaG039945	0.807957	6.669576e-50	1.084269e-47
MsaG003966	MsaG039945	0.811668	1.070569e-50	1.904300e-48
MsaG004153	MsaG039945	0.837535	9.003609e-57	3.255494e-54
MsaG004538	MsaG039945	0.854771	1.903516e-61	1.219682e-58
MsaG004656	MsaG039945	0.808425	5.308335e-50	8.727254e-48
MsaG005005	MsaG039945	0.805968	1.749146e-49	2.712370e-47
MsaG005006	MsaG039945	0.813581	4.104779e-51	7.656998e-49
MsaG005092	MsaG039945	0.812237	8.060409e-51	1.453911e-48
MsaG005160	MsaG039945	0.810138	2.287557e-50	3.919582e-48
MsaG005641	MsaG039945	0.829769	7.681858e-55	2.208484e-52
MsaG006122	MsaG039945	0.842312	5.192666e-58	2.181016e-55
MsaG006335	MsaG039945	0.810888	1.578235e-50	2.754134e-48
MsaG006623	MsaG039945	0.816258	1.052598e-51	2.100759e-49
MsaG006655	MsaG039945	0.854592	2.143505e-61	1.364832e-58
MsaG006638	MsaG039945	0.803975	4.544905e-49	6.728573e-47
MsaG006833	MsaG039945	0.841104	1.078228e-57	4.357896e-55
MsaG007006	MsaG039945	0.855571	1.117185e-61	7.368355e-59
MsaG007182	MsaG039945	0.844241	1.597007e-58	7.137667e-56
MsaG007481	MsaG039945	0.808892	4.222263e-50	7.020488e-48
MsaG007737	MsaG039945	0.813480	4.318075e-51	8.034546e-49
MsaG008238	MsaG039945	0.827620	2.526449e-54	6.835687e-52
MsaG008697	MsaG039945	0.844614	1.269048e-58	5.741797e-56
MsaG010337	MsaG039945	0.806197	1.566514e-49	2.442458e-47
MsaG010420	MsaG039945	0.819785	1.693606e-52	3.703557e-50
MsaG010545	MsaG039945	0.861854	1.513549e-63	1.262970e-60
MsaG012489	MsaG039945	0.809736	2.789346e-50	4.733156e-48
MsaG012528	MsaG039945	0.810253	2.161240e-50	3.713619e-48
MsaG044019	MsaG039945	0.841175	1.032762e-57	4.183740e-55
MsaG044728	MsaG039945	0.811739	1.033721e-50	1.841942e-48
MsaG045019	MsaG039945	0.837615	8.592194e-57	3.114260e-54
MsaG045535	MsaG039945	0.824676	1.257616e-53	3.135551e-51
MsaG045609	MsaG039945	0.816762	8.129870e-52	1.643626e-49
MsaG046104	MsaG039945	0.816731	8.258985e-52	1.668373e-49
MsaG046180	MsaG039945	0.869299	6.969467e-66	7.842709e-63
MsaG046824	MsaG039945	0.845971	5.472330e-59	2.589221e-56
MsaG046868	MsaG039945	0.803327	6.187842e-49	9.024220e-47
MsaG047142	MsaG039945	0.806852	1.141106e-49	1.806830e-47
MsaG002308	MsaG039945	0.800733	2.099487e-48	2.886055e-46
MsaG001555	MsaG039945	0.812034	8.921659e-51	1.601285e-48
MsaG002617	MsaG039945	0.823119	2.902211e-53	6.936451e-51
MsaG007986	MsaG039945	0.803831	4.868313e-49	7.183191e-47
MsaG009465	MsaG039945	0.818921	2.660511e-52	5.687434e-50
MsaG028732	MsaG039945	0.851848	1.299466e-60	7.508387e-58
MsaG033666	MsaG039945	0.806413	1.411430e-49	2.211949e-47
MsaG033077	MsaG039945	0.823982	1.827497e-53	4.471130e-51
MsaG031242	MsaG039945	0.832904	1.312143e-55	4.130472e-53
MsaG030550	MsaG039945	0.817469	5.646310e-52	1.162513e-49
MsaG033449	MsaG039945	0.811812	9.965446e-51	1.778954e-48
MsaG034891	MsaG039945	0.828604	1.467936e-54	4.082910e-52
MsaG037155	MsaG039945	0.821833	5.756216e-53	1.328946e-50
MsaG039945	MsaG035299	0.856958	4.398488e-62	3.051360e-59
MsaG039945	MsaG044600	0.805856	1.846491e-49	2.855765e-47
MsaG039945	MsaG042989	0.858933	1.147053e-62	8.564434e-60
MsaG039945	MsaG046905	0.824394	1.463506e-53	3.621117e-51
MsaG012805	MsaG039945	0.808970	4.063963e-50	6.769841e-48
MsaG013629	MsaG039945	0.814581	2.474750e-51	4.733521e-49
MsaG014671	MsaG039945	0.857695	2.669791e-62	1.903429e-59
MsaG015623	MsaG039945	0.816869	7.693477e-52	1.559677e-49
MsaG015721	MsaG039945	0.803970	4.555982e-49	6.744214e-47
MsaG015809	MsaG039945	0.810591	1.828680e-50	3.168164e-48
MsaG017150	MsaG039945	0.803011	7.186527e-49	1.040467e-46
MsaG017301	MsaG039945	0.857547	2.952337e-62	2.093306e-59
MsaG017589	MsaG039945	0.801574	1.415779e-48	1.983494e-46
MsaG017800	MsaG039945	0.814559	2.502696e-51	4.784323e-49
MsaG018078	MsaG039945	0.802591	8.767753e-49	1.257225e-46
MsaG018083	MsaG039945	0.828591	1.478356e-54	4.110453e-52
MsaG018577	MsaG039945	0.879342	2.836442e-69	4.966396e-66
MsaG018913	MsaG039945	0.805424	2.272725e-49	3.479615e-47
MsaG019083	MsaG039945	0.821791	5.886348e-53	1.357428e-50
MsaG019395	MsaG039945	0.825922	6.397421e-54	1.650921e-51
MsaG019494	MsaG039945	0.809958	2.500266e-50	4.265356e-48
MsaG019525	MsaG039945	0.812933	5.686280e-51	1.043636e-48
MsaG019572	MsaG039945	0.820511	1.157251e-52	2.579858e-50
MsaG019910	MsaG039945	0.818675	3.022764e-52	6.420365e-50
MsaG020353	MsaG039945	0.818997	2.556367e-52	5.475827e-50
MsaG020346	MsaG039945	0.853046	5.946343e-61	3.583588e-58
MsaG020336	MsaG039945	0.804872	2.961441e-49	4.476470e-47
MsaG020783	MsaG039945	0.801751	1.302536e-48	1.832241e-46
MsaG020814	MsaG039945	0.811071	1.441426e-50	2.526713e-48
MsaG022300	MsaG039945	0.806994	1.065324e-49	1.692497e-47
MsaG022895	MsaG039945	0.810827	1.626973e-50	2.834961e-48
MsaG023894	MsaG039945	0.813190	4.997850e-51	9.232027e-49
MsaG024303	MsaG039945	0.834089	6.661722e-56	2.171346e-53
MsaG024453	MsaG039945	0.831137	3.568246e-55	1.066866e-52
MsaG024574	MsaG039945	0.831879	2.347532e-55	7.173021e-53
MsaG024622	MsaG039945	0.830954	3.954497e-55	1.176141e-52
MsaG026607	MsaG039945	0.800778	2.056038e-48	2.829202e-46
MsaG026786	MsaG039945	0.834193	6.277405e-56	2.052471e-53
MsaG026963	MsaG039945	0.827080	3.399493e-54	9.059347e-52
MsaG027138	MsaG039945	0.822453	4.141426e-53	9.721434e-51
MsaG027163	MsaG039945	0.800517	2.322363e-48	3.176863e-46
MsaG027307	MsaG039945	0.808186	5.965372e-50	9.751387e-48
MsaG027339	MsaG039945	0.827055	3.445035e-54	9.174391e-52
MsaG027775	MsaG039945	0.803691	5.204940e-49	7.655004e-47
MsaG027822	MsaG039945	0.860675	3.447837e-63	2.750941e-60
MsaG027763	MsaG039945	0.873461	2.973003e-67	3.996074e-64
MsaG027885	MsaG039945	0.809240	3.560301e-50	5.969174e-48
MsaG028038	MsaG039945	0.815395	1.636558e-51	3.195385e-49
MsaG028154	MsaG039945	0.813769	3.733833e-51	6.997914e-49
MsaG028516	MsaG039945	0.833461	9.548940e-56	3.055508e-53
MsaG028900	MsaG039945	0.807110	1.006923e-49	1.604103e-47
MsaG029690	MsaG039945	0.808522	5.062182e-50	8.342149e-48
MsaG029752	MsaG039945	0.845945	5.560123e-59	2.628466e-56
MsaG029950	MsaG039945	0.833512	9.273990e-56	2.971979e-53
MsaG032702	MsaG039945	0.838515	5.053262e-57	1.883166e-54
MsaG033519	MsaG039945	0.816104	1.139316e-51	2.264828e-49
MsaG033744	MsaG039945	0.803527	5.625678e-49	8.242550e-47
MsaG033995	MsaG039945	0.839797	2.359853e-57	9.153769e-55
MsaG034426	MsaG039945	0.807536	8.188064e-50	1.317724e-47
MsaG034826	MsaG039945	0.856569	5.720401e-62	3.912850e-59
MsaG035660	MsaG039945	0.836145	2.030489e-56	7.039018e-54
MsaG038422	MsaG039945	0.819398	2.073677e-52	4.488944e-50
MsaG039468	MsaG039945	0.828539	1.521849e-54	4.225171e-52
MsaG040045	MsaG039945	0.802632	8.599967e-49	1.234325e-46
MsaG040725	MsaG039945	0.852024	1.159636e-60	6.742495e-58
MsaG041034	MsaG039945	0.816036	1.179750e-51	2.341167e-49
MsaG041202	MsaG039945	0.842640	4.255010e-58	1.806212e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039945	MtrunA17_Chr7g0264171	94.763	611	30	2	1	610	1	610	0.0	1207
MsaG039945	MtrunA17_Chr1g0181211	54.369	618	247	13	22	618	18	621	0.0	614
MsaG039945	MtrunA17_Chr7g0264161	77.810	347	31	1	40	386	1	301	0.0	553
MsaG039945	MtrunA17_Chr2g0326761	53.016	547	222	11	21	554	1	525	0.0	547
MsaG039945	MtrunA17_Chr4g0028971	54.275	538	226	11	28	554	9	537	0.0	533
MsaG039945	MtrunA17_Chr1g0199681	49.656	582	229	18	22	565	85	640	9.76e-168	494
MsaG039945	MtrunA17_Chr3g0115271	42.095	525	251	17	27	536	15	501	4.26e-118	363
MsaG039945	MtrunA17_Chr5g0424931	39.726	511	231	16	26	512	14	471	1.50e-99	313
MsaG039945	MtrunA17_Chr5g0417281	33.159	573	255	19	26	555	6	493	2.21e-82	268
MsaG039945	MtrunA17_Chr5g0436761	35.484	465	216	12	26	475	7	402	1.49e-77	254
MsaG039945	MtrunA17_Chr1g0156321	36.010	411	190	11	24	422	36	385	2.98e-71	246
MsaG039945	MtrunA17_Chr4g0046371	38.422	393	179	11	27	406	34	376	2.82e-69	238
MsaG039945	MtrunA17_Chr1g0178011	32.877	438	226	9	26	455	7	384	2.64e-68	229
MsaG039945	MtrunA17_Chr2g0276781	36.000	425	213	10	23	440	15	387	1.25e-67	233
MsaG039945	MtrunA17_Chr2g0285461	35.646	418	209	11	26	434	18	384	1.62e-66	234
MsaG039945	MtrunA17_Chr7g0239061	35.507	414	203	12	31	434	14	373	4.59e-65	226
MsaG039945	MtrunA17_Chr5g0433301	35.589	399	198	10	26	415	19	367	2.29e-64	227
MsaG039945	MtrunA17_Chr8g0385791	36.232	414	202	12	31	435	59	419	2.39e-64	226
MsaG039945	MtrunA17_Chr3g0109391	35.750	400	196	11	26	415	21	369	8.85e-64	225
MsaG039945	MtrunA17_Chr2g0277461	34.709	412	196	15	28	430	10	357	9.87e-64	217
MsaG039945	MtrunA17_Chr8g0376771	35.407	418	209	12	26	434	18	383	1.92e-63	225
MsaG039945	MtrunA17_Chr5g0417211	34.913	401	173	12	28	414	9	335	1.98e-61	209
MsaG039945	MtrunA17_Chr2g0326281	34.353	425	202	11	31	427	56	431	5.12e-61	217
MsaG039945	MtrunA17_Chr4g0029671	35.280	411	199	10	31	425	54	413	8.66e-61	216
MsaG039945	MtrunA17_Chr2g0301251	36.573	391	189	9	26	408	18	357	9.50e-61	219
MsaG039945	MtrunA17_Chr4g0070181	33.492	421	211	11	26	435	18	380	1.12e-60	219
MsaG039945	MtrunA17_Chr8g0346711	35.280	411	204	10	25	427	23	379	7.41e-60	211
MsaG039945	MtrunA17_Chr2g0289221	47.248	218	91	5	28	231	17	224	3.41e-57	197
MsaG039945	MtrunA17_Chr8g0389081	47.222	216	102	3	28	235	29	240	5.96e-57	207
MsaG039945	MtrunA17_Chr8g0389081	38.000	100	59	3	312	409	271	369	1.60e-11	67.8
MsaG039945	MtrunA17_Chr4g0009751	34.217	415	210	11	29	433	17	378	7.78e-57	202
MsaG039945	MtrunA17_Chr2g0282961	46.262	214	104	3	27	232	49	259	9.94e-52	188
MsaG039945	MtrunA17_Chr2g0282961	35.455	110	66	3	298	406	282	387	2.28e-14	76.3
MsaG039945	MtrunA17_Chr5g0425261	31.671	401	191	13	28	413	9	341	1.58e-49	176
MsaG039945	MtrunA17_Chr5g0424801	31.139	395	190	12	28	407	9	336	1.35e-48	174
MsaG039945	MtrunA17_Chr5g0424741	28.802	434	217	14	26	422	7	385	1.61e-42	160
MsaG039945	MtrunA17_Chr5g0425661	35.644	202	112	3	27	219	33	225	2.39e-37	139
MsaG039945	MtrunA17_Chr2g0277531	38.498	213	117	7	28	231	17	224	1.32e-36	139
MsaG039945	MtrunA17_Chr8g0356211	29.595	321	158	12	139	454	2	259	9.33e-31	122
MsaG039945	MtrunA17_Chr5g0425651	36.585	123	68	4	301	415	1	121	8.32e-18	79.7
MsaG039945	MtrunA17_Chr5g0424791	32.026	153	89	5	77	227	12	151	6.38e-15	72.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039945	AT4G30080.1	54.737	475	181	13	26	486	14	468	2.64e-166	490
MsaG039945	AT2G28350.2	46.600	603	266	15	26	599	5	580	3.20e-163	482
MsaG039945	AT2G28350.1	46.600	603	266	15	26	599	5	580	5.63e-163	483
MsaG039945	AT1G77850.1	38.406	552	301	10	25	562	13	539	3.08e-116	358
MsaG039945	AT1G77850.2	38.406	552	301	10	25	562	13	539	4.70e-116	358
MsaG039945	AT1G19850.1	35.784	408	193	11	15	406	34	388	1.11e-68	240
MsaG039945	AT1G19850.2	35.784	408	193	11	15	406	23	377	1.24e-68	239
MsaG039945	AT1G30330.3	35.520	442	221	12	1	434	1	386	1.96e-68	240
MsaG039945	AT1G30330.2	35.520	442	221	12	1	434	1	386	1.96e-68	240
MsaG039945	AT1G30330.1	36.211	417	208	11	26	434	18	384	1.84e-67	237
MsaG039945	AT1G59750.4	34.741	521	265	17	31	535	22	483	2.20e-67	232
MsaG039945	AT1G59750.1	34.608	523	268	18	31	535	22	488	2.51e-67	232
MsaG039945	AT1G59750.3	34.608	523	268	18	31	535	22	488	2.51e-67	232
MsaG039945	AT1G59750.2	34.924	524	262	19	31	535	22	485	7.24e-67	231
MsaG039945	AT5G62000.2	35.160	438	217	11	2	425	26	410	7.39e-66	231
MsaG039945	AT5G62000.5	35.160	438	217	11	2	425	26	410	7.39e-66	231
MsaG039945	AT5G62000.3	35.160	438	217	11	2	425	26	410	7.39e-66	231
MsaG039945	AT5G62000.1	35.160	438	217	11	2	425	26	410	7.39e-66	231
MsaG039945	AT5G62000.4	35.160	438	217	11	2	425	26	410	1.07e-65	231
MsaG039945	AT5G60450.2	34.532	417	210	10	22	424	32	399	1.59e-65	229
MsaG039945	AT5G37020.2	35.500	400	197	11	26	415	17	365	2.02e-65	229
MsaG039945	AT5G37020.1	35.500	400	197	11	26	415	17	365	3.70e-65	229
MsaG039945	AT2G33860.1	33.118	465	236	14	31	474	54	464	4.92e-65	224
MsaG039945	AT5G60450.1	34.804	408	203	10	31	424	65	423	5.03e-65	228
MsaG039945	AT3G61830.1	33.875	431	214	12	31	451	25	394	1.15e-60	213
MsaG039945	AT2G46530.1	34.456	386	187	10	31	406	21	350	6.70e-60	211
MsaG039945	AT2G46530.3	34.456	386	187	10	31	406	42	371	1.26e-59	210
MsaG039945	AT1G34310.1	34.815	405	203	9	28	427	24	372	2.83e-58	206
MsaG039945	AT1G35520.1	34.230	409	206	9	31	434	27	377	1.23e-57	204
MsaG039945	AT1G35240.1	33.902	410	206	10	31	434	27	377	1.96e-57	204
MsaG039945	AT1G34410.1	34.063	411	204	10	31	434	27	377	6.27e-56	200
MsaG039945	AT1G35540.1	33.835	399	204	9	31	424	27	370	6.17e-55	197
MsaG039945	AT1G19220.1	45.622	217	107	3	26	235	18	230	2.61e-54	200
MsaG039945	AT1G19220.1	36.220	127	78	3	312	437	261	385	6.61e-14	75.9
MsaG039945	AT5G20730.3	43.318	217	112	3	26	235	19	231	8.80e-53	196
MsaG039945	AT5G20730.3	34.375	128	80	4	312	437	262	387	5.00e-12	69.7
MsaG039945	AT5G20730.2	43.318	217	112	3	26	235	19	231	1.20e-52	195
MsaG039945	AT5G20730.2	33.858	127	81	3	312	437	262	386	6.23e-13	72.8
MsaG039945	AT5G20730.1	43.318	217	112	3	26	235	19	231	1.21e-52	195
MsaG039945	AT5G20730.1	34.375	128	80	4	312	437	262	387	4.73e-12	69.7
MsaG039945	AT4G23980.2	31.343	402	215	10	31	424	12	360	7.03e-51	186
MsaG039945	AT4G23980.1	31.343	402	215	10	31	424	12	360	7.37e-51	186
MsaG039945	AT1G34170.1	32.187	407	210	10	9	406	3	352	3.81e-50	182
MsaG039945	AT3G61830.2	33.159	383	191	10	73	451	22	343	7.33e-50	182
MsaG039945	AT2G33860.2	33.613	357	173	11	131	474	2	307	1.22e-47	174
MsaG039945	AT1G34390.1	32.266	406	204	10	31	427	27	370	1.82e-47	176
MsaG039945	AT5G37020.3	36.934	287	132	7	131	415	31	270	3.07e-47	177
MsaG039945	AT1G34170.2	30.958	407	189	10	9	406	3	326	7.68e-44	164
MsaG039945	AT1G34170.3	30.958	407	189	10	9	406	3	326	3.89e-43	163
MsaG039945	AT2G46530.2	34.173	278	132	6	130	406	36	263	2.21e-41	157
MsaG039945	AT1G43950.1	38.537	205	112	6	31	230	27	222	1.03e-34	131
MsaG039945	ATMG00940.1	33.537	164	93	3	218	381	1	148	1.52e-20	89.4
MsaG039945	AT3G25730.1	26.738	187	108	4	82	254	122	293	4.60e-12	68.2
MsaG039945	AT2G46870.1	37.113	97	60	1	123	219	27	122	7.75e-12	67.4
MsaG039945	AT1G13260.1	30.147	136	76	3	118	251	175	293	8.41e-11	64.3

Find 149 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAAAGTTGGCATTGGAAAT+TGG	0.228346	7:+94773816	None:intergenic
TGGAATGAAAGACGGAATTT+TGG	0.237258	7:+94775525	None:intergenic
CATCAACGTGTCTGAAATTA+AGG	0.241218	7:-94775383	MsaT039945.1:CDS
TGGCCATCAATTGGGAAATC+TGG	0.249420	7:+94773836	None:intergenic
GGCATTTCAGGCACGTTTAT+AGG	0.250063	7:-94775195	MsaT039945.1:CDS
GCATTTCAGGCACGTTTATA+GGG	0.272489	7:-94775194	MsaT039945.1:CDS
CTTGTGAAAACTTCTTTAAT+TGG	0.278075	7:-94774758	MsaT039945.1:CDS
CAGCTATGGCATGCCGTTGC+AGG	0.280375	7:-94775646	MsaT039945.1:CDS
ATGGCGAAAAGTGGCATTTC+AGG	0.309403	7:-94775207	MsaT039945.1:CDS
CGGAACTATTGCTTCTGTTC+AGG	0.311558	7:-94774648	MsaT039945.1:CDS
GTTGGAGTCGATCCTTTGTT+AGG	0.313766	7:-94775025	MsaT039945.1:CDS
CTCCCAGATTTCCCAATTGA+TGG	0.331554	7:-94773839	MsaT039945.1:CDS
TTAGGATTTAGAAGGTTGTT+TGG	0.339574	7:+94773794	None:intergenic
TTCAGCTAACCCTCCTCTTC+AGG	0.348707	7:-94775251	MsaT039945.1:CDS
TTGGAATATTAGGATTTAGA+AGG	0.349891	7:+94773786	None:intergenic
TTGGAATTCGGAGGGCTAAA+AGG	0.350812	7:-94775057	MsaT039945.1:CDS
TATTATTATTAAACGGTTGT+TGG	0.355810	7:+94773651	None:intergenic
ATTGGAAATTGGCCATCAAT+TGG	0.356580	7:+94773827	None:intergenic
AGAAGGTTGTTTGGAAAAGT+TGG	0.365277	7:+94773803	None:intergenic
TGGAAATCTGGTAGTGGAAT+TGG	0.365957	7:-94775001	MsaT039945.1:CDS
CTGCGAATGTTTCTTCGCAT+TGG	0.366575	7:+94773348	None:intergenic
CAGTGTCGACTTGTATTGTT+TGG	0.368403	7:+94773477	None:intergenic
AATGGAAGATTATGAAAATC+TGG	0.372719	7:+94773695	None:intergenic
TTTGCAATGCCAAGTTATTA+GGG	0.373972	7:+94773606	None:intergenic
TCAAGGATAAGTTGGTTTAT+CGG	0.374081	7:-94774668	MsaT039945.1:CDS
GGAGCCAGGCATGGTCATTT+CGG	0.375741	7:-94773728	MsaT039945.1:CDS
TTTGATAATGATGGTGTTGC+TGG	0.376636	7:-94775406	MsaT039945.1:CDS
CTAACTTGGTTAATATTCAT+AGG	0.385591	7:+94775430	None:intergenic
AAGAGGCATTTGTTGACAAC+TGG	0.392584	7:-94775163	MsaT039945.1:CDS
CCTTTGTTAGGGTGGAAATC+TGG	0.395570	7:-94775013	MsaT039945.1:CDS
GGTAATCTCAATTTCTTCCT+TGG	0.395833	7:+94773866	None:intergenic
TTGGAACAGCACTTCAGATT+AGG	0.401029	7:-94774739	MsaT039945.1:CDS
GCGATCTTCATGTTGGAATT+CGG	0.404653	7:-94775069	MsaT039945.1:CDS
CTGGCTCCCTGCATGCCGGC+AGG	0.407927	7:+94773743	None:intergenic
GCCATCTTGAACCTCATTCC+AGG	0.409391	7:+94774710	None:intergenic
TTAAACGGTTGTTGGAAACT+AGG	0.416552	7:+94773659	None:intergenic
CAATCCAACTGAGATGAATA+TGG	0.421601	7:-94775713	MsaT039945.1:CDS
AAAACATGTGAGTTAACTTC+TGG	0.421701	7:+94775607	None:intergenic
AGCGACAAGAAACTTGCGTC+TGG	0.427650	7:-94775124	MsaT039945.1:CDS
TTGGAAATTGGCCATCAATT+GGG	0.428714	7:+94773828	None:intergenic
TGCACAATCTTCAGAGAAAC+CGG	0.428735	7:-94773534	MsaT039945.1:CDS
AACTAGTCCTGCCGGCATGC+AGG	0.430643	7:-94773750	MsaT039945.1:CDS
GTCGCAATATTATTATTAAA+CGG	0.430671	7:+94773644	None:intergenic
CTTATTGCTTCAACTCTACA+TGG	0.431451	7:+94775505	None:intergenic
CTGCCGGCATGCAGGGAGCC+AGG	0.432868	7:-94773742	MsaT039945.1:CDS
ACATTAGAGATGAAACATTC+AGG	0.433701	7:-94773320	MsaT039945.1:intron
GAAATGTTCTCACTGGTGTT+CGG	0.434122	7:+94773581	None:intergenic
AGTTGAAGCAATAAGATATA+TGG	0.445009	7:-94775497	MsaT039945.1:CDS
CTAGGCTGAAAGAGACCTAA+TGG	0.448362	7:+94773677	None:intergenic
CATCATTATCAAAACTAACT+TGG	0.449861	7:+94775416	None:intergenic
TGATGAGTCCTCAGTTTCAA+TGG	0.449908	7:+94774688	None:intergenic
GATAATAAACTTCGAAGAAA+CGG	0.452871	7:-94774926	MsaT039945.1:CDS
GCTAATAAGTGATGGAATGA+TGG	0.454476	7:-94774888	MsaT039945.1:CDS
GTTGTCAACAAATGCCTCTT+CGG	0.456311	7:+94775166	None:intergenic
TTCTTCCTTGGCGGTATGAA+AGG	0.458131	7:+94773878	None:intergenic
CGCCGAGCATGCATGTGAAC+CGG	0.459270	7:-94775566	MsaT039945.1:CDS
AGTTTCTTGTCGCTGACAAA+AGG	0.461470	7:+94775133	None:intergenic
GTGGTTTATTATCCTCGGTC+AGG	0.470650	7:-94774794	MsaT039945.1:CDS
CACCGGTTCACATGCATGCT+CGG	0.471821	7:+94775564	None:intergenic
AAGTGATGGAATGATGGGTA+GGG	0.472687	7:-94774882	MsaT039945.1:CDS
GACTCCATATTCATCTCAGT+TGG	0.472803	7:+94775709	None:intergenic
TTGGAGTCGATCCTTTGTTA+GGG	0.473989	7:-94775024	MsaT039945.1:CDS
ATTTGTCCTGCACCACCTTA+CGG	0.476461	7:-94774977	MsaT039945.1:CDS
CGAAGAAACGGTAAAGGTAA+TGG	0.476494	7:-94774914	MsaT039945.1:CDS
TTGATGTGGTTTATTATCCT+CGG	0.489017	7:-94774799	MsaT039945.1:CDS
TTGTTTGGAAAAGTTGGCAT+TGG	0.489751	7:+94773809	None:intergenic
GGATAATAAACCACATCAAA+CGG	0.491751	7:+94774803	None:intergenic
GGCCATCAATTGGGAAATCT+GGG	0.492331	7:+94773837	None:intergenic
AGGACTCATCAAGGATAAGT+TGG	0.493550	7:-94774676	MsaT039945.1:CDS
CTTCAGATTAGGTGGTGTCC+TGG	0.494054	7:-94774728	MsaT039945.1:CDS
TGGTGCGGCTTTGCATGATC+CGG	0.495348	7:+94773515	None:intergenic
AATCTCAATTTCTTCCTTGG+CGG	0.497432	7:+94773869	None:intergenic
CATCAGATGTACGTGTCGGC+AGG	0.505339	7:+94773396	None:intergenic
TAAGTGATGGAATGATGGGT+AGG	0.517866	7:-94774883	MsaT039945.1:CDS
TTCAGGCTGCTGATCCGTCA+TGG	0.519149	7:-94774631	MsaT039945.1:CDS
ACTAGTCCTGCCGGCATGCA+GGG	0.520362	7:-94773749	MsaT039945.1:CDS
ATCTTCATGTTGGAATTCGG+AGG	0.523611	7:-94775066	MsaT039945.1:CDS
GATGACTGTCCCTAATAACT+TGG	0.526305	7:-94773615	MsaT039945.1:CDS
GGCATGCAGGGAGCCAGGCA+TGG	0.527776	7:-94773737	MsaT039945.1:CDS
AAGACCGAAATGACCATGCC+TGG	0.532259	7:+94773724	None:intergenic
AATCCTCCGTAAGGTGGTGC+AGG	0.533772	7:+94774971	None:intergenic
TTAGGGTGGAAATCTGGTAG+TGG	0.537403	7:-94775007	MsaT039945.1:CDS
AGCGTTTCTGCACAATATCT+AGG	0.540389	7:+94775292	None:intergenic
GCGACAAGAAACTTGCGTCT+GGG	0.540853	7:-94775123	MsaT039945.1:CDS
GGCGGTATGAAAGGCGAAAG+AGG	0.541655	7:+94773887	None:intergenic
GAGTAAGCACTGAAATTCAC+CGG	0.548533	7:+94775547	None:intergenic
AGGATGTTCATGGCGAAAAG+TGG	0.550349	7:-94775216	MsaT039945.1:CDS
CGACAAGAAACTTGCGTCTG+GGG	0.550603	7:-94775122	MsaT039945.1:CDS
AATGGATTGCTAATAAGTGA+TGG	0.550837	7:-94774896	MsaT039945.1:CDS
AAGATTATGAAAATCTGGTA+AGG	0.555027	7:+94773700	None:intergenic
GCTAAAAGGCGAAATAATGT+TGG	0.555377	7:-94775043	MsaT039945.1:CDS
ATGCCTGGCTCCCTGCATGC+CGG	0.557141	7:+94773739	None:intergenic
GTGATGGAATGATGGGTAGG+GGG	0.558347	7:-94774880	MsaT039945.1:CDS
CATTTCAGGCACGTTTATAG+GGG	0.562067	7:-94775193	MsaT039945.1:CDS
TTGCACCATTCCTCCTGCAA+CGG	0.567997	7:+94775633	None:intergenic
AGTGATGGAATGATGGGTAG+GGG	0.568376	7:-94774881	MsaT039945.1:CDS
GGCATTTGTTGACAACTGGA+TGG	0.569244	7:-94775159	MsaT039945.1:CDS
TTAGGTGGTGTCCTGGAATG+AGG	0.569864	7:-94774721	MsaT039945.1:CDS
ATTGGGAAATCTGGGAGTTG+AGG	0.570713	7:+94773845	None:intergenic
TTGAAACTGAGGACTCATCA+AGG	0.572823	7:-94774685	MsaT039945.1:CDS
AAACTTCGAAGAAACGGTAA+AGG	0.575815	7:-94774920	MsaT039945.1:CDS
GAGACTTCATCAGAAAAGCT+AGG	0.576418	7:-94773217	MsaT039945.1:CDS
AACGATGGAAATCCTCCGTA+AGG	0.577357	7:+94774962	None:intergenic
GAAAACGGCGATCTTCATGT+TGG	0.577451	7:-94775076	MsaT039945.1:CDS
AGAGTGTGGACCCTCAGCTA+TGG	0.582931	7:-94775660	MsaT039945.1:CDS
GAGTCGATCCTTTGTTAGGG+TGG	0.585067	7:-94775021	MsaT039945.1:CDS
ATTTACGAAACTAGTCCTGC+CGG	0.585627	7:-94773758	MsaT039945.1:CDS
CTATGGCATGCCGTTGCAGG+AGG	0.585809	7:-94775643	MsaT039945.1:CDS
TAATATGCAGCCGTTTGATG+TGG	0.585844	7:-94774813	MsaT039945.1:CDS
AAGTTATTAGGGACAGTCAT+CGG	0.589613	7:+94773617	None:intergenic
CTAATAAGTGATGGAATGAT+GGG	0.591799	7:-94774887	MsaT039945.1:CDS
GCAACGGCATGCCATAGCTG+AGG	0.591988	7:+94775649	None:intergenic
GCATGCTCGGCGTGACCCTG+AGG	0.592711	7:+94775577	None:intergenic
CATGCTCGGCGTGACCCTGA+GGG	0.593580	7:+94775578	None:intergenic
CGTCATGGTCTGATTCTATG+TGG	0.597184	7:-94774616	MsaT039945.1:CDS
GTTTGCATCAGATTGTGTCA+AGG	0.603398	7:+94775336	None:intergenic
CGAGCATGAAATGTTCTCAC+TGG	0.604009	7:+94773574	None:intergenic
GCATGCCGTTGCAGGAGGAA+TGG	0.606658	7:-94775638	MsaT039945.1:CDS
ATGAAGTGTATGCAAAACTC+AGG	0.607388	7:-94775459	MsaT039945.1:CDS
GATACTATTTCAACTTGCCA+CGG	0.610748	7:+94773926	None:intergenic
GCGGTATGAAAGGCGAAAGA+GGG	0.612138	7:+94773888	None:intergenic
ACTCTACATGGAATGAAAGA+CGG	0.613123	7:+94775517	None:intergenic
CAACGGCATGCCATAGCTGA+GGG	0.613865	7:+94775650	None:intergenic
TCCTGGAATGAGGTTCAAGA+TGG	0.614384	7:-94774711	MsaT039945.1:CDS
TCTTCATGTTGGAATTCGGA+GGG	0.615735	7:-94775065	MsaT039945.1:CDS
TTTCGCCTTTCATACCGCCA+AGG	0.619271	7:-94773883	MsaT039945.1:CDS
TCTTCCTCTCCCGAAAACGA+TGG	0.620463	7:+94774947	None:intergenic
GAACAGCACTTCAGATTAGG+TGG	0.620797	7:-94774736	MsaT039945.1:CDS
TTTATAGGGGAACGCCGAAG+AGG	0.625074	7:-94775180	MsaT039945.1:CDS
GTTATTGAAGCAATAAAACT+CGG	0.633322	7:-94774839	MsaT039945.1:CDS
CCAGATTTCCACCCTAACAA+AGG	0.634082	7:+94775013	None:intergenic
CTCTCATCAGATGTACGTGT+CGG	0.637287	7:+94773392	None:intergenic
CAAGATGGCCATTGAAACTG+AGG	0.643200	7:-94774696	MsaT039945.1:CDS
AAAGGCGAAAGAGGGATCGA+AGG	0.643435	7:+94773896	None:intergenic
GATGGAAATCCTCCGTAAGG+TGG	0.645097	7:+94774965	None:intergenic
TTCTATGTGGAGACTTCTCG+AGG	0.645176	7:-94774603	MsaT039945.1:intron
ATGTGAAAAGAGTGAATCCG+TGG	0.650057	7:-94773943	MsaT039945.1:CDS
CAAACAATACAAGTCGACAC+TGG	0.651728	7:-94773476	MsaT039945.1:CDS
TCTGATGCAAACAATGGTGG+TGG	0.655667	7:-94775325	MsaT039945.1:CDS
CAATGCGAAGAAACATTCGC+AGG	0.655730	7:-94773347	MsaT039945.1:CDS
CATCTGATGAGAGGTTCGAG+TGG	0.680653	7:-94773382	MsaT039945.1:CDS
TGTCCTGCACCACCTTACGG+AGG	0.685773	7:-94774974	MsaT039945.1:CDS
CACATAGAATCAGACCATGA+CGG	0.689130	7:+94774617	None:intergenic
CGACACGTACATCTGATGAG+AGG	0.689516	7:-94773391	MsaT039945.1:CDS
ACTTCATCAGAAAAGCTAGG+AGG	0.691502	7:-94773214	MsaT039945.1:CDS
ACACAATCTGATGCAAACAA+TGG	0.696099	7:-94775331	MsaT039945.1:CDS
CAATCTGATGCAAACAATGG+TGG	0.722659	7:-94775328	MsaT039945.1:CDS
AACTCAGGAGTACCTGACCG+AGG	0.728041	7:+94774782	None:intergenic
TTAGCTGAATAGTCCAAACG+AGG	0.756003	7:+94775265	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	94773210	94775758	94773210	ID=MsaG039945
Chr7	mRNA	94773210	94775758	94773210	ID=MsaT039945.1;Parent=MsaG039945
Chr7	exon	94773210	94773238	94773210	ID=MsaT039945.1.exon3;Parent=MsaT039945.1
Chr7	CDS	94773210	94773238	94773210	ID=cds.MsaT039945.1;Parent=MsaT039945.1
Chr7	exon	94773321	94773996	94773321	ID=MsaT039945.1.exon2;Parent=MsaT039945.1
Chr7	CDS	94773321	94773996	94773321	ID=cds.MsaT039945.1;Parent=MsaT039945.1
Chr7	exon	94774604	94775758	94774604	ID=MsaT039945.1.exon1;Parent=MsaT039945.1
Chr7	CDS	94774604	94775758	94774604	ID=cds.MsaT039945.1;Parent=MsaT039945.1

Gene Sequence

>MsaT039945.1

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAACTGAGATGAATATGGAGTCAAACAAGAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACATGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCAATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGAACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAATAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCAGGTACTCCTGAGTTTCTTGTGAAAACTTCTTTAATTGGAACAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTATTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTTACATGGGATGAACCTGAGATACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTACCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAATCCTAATATTCCAATTTTTATTTACGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTCTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATAATATTGCGACGATGCCGATGACTGTCCCTAATAACTTGGCATTGCAAAAGCCGAACACCAGTGAGAACATTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTCGACACTGGAAATGAGAATTCCGAGAAGAAAATGACTAATCATTTGTCTGATTTTCATCTACAAAGCCTGCCGACACGTACATCTGATGAGAGGTTCGAGTGGAATGCTAAGAACCAATGCGAAGAAACATTCGCAGGAGAAACATTAGAGATGAAACATTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA

Protein sequence

>MsaT039945.1

MKEKRKGCNPTEMNMESNKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSHVFYFPQGHAEHACEPVNFSAYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLLGWKSGSGIGICPAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAIKLGTNMQPFDVVYYPRSGTPEFLVKTSLIGTALQIRWCPGMRFKMAIETEDSSRISWFIGTIASVQAADPSWSDSMWRLLEVTWDEPEILKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLNPNIPIFIYETSPAGMQGARHGHFGLTLPDFHNLPLGLFQPSFQQPFNNNIATMPMTVPNNLALQKPNTSENISCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDTGNENSEKKMTNHLSDFHLQSLPTRTSDERFEWNAKNQCEETFAGETLEMKHSETSSEKLGG*