AlfalfaGEDB | MsaG039962

M. sativa ssp. caerulea / MsaG039962

KEGG: -
GO: GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039962	XP_013449996.1	97.183	426	12	0	1	426	1	426	0.0	861

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039962	sp\|Q9SF86\|PCRK1_ARATH	72.632	380	100	2	1	379	1	377	0.0	571

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039962	tr\|A0A072U2V9\|A0A072U2V9_MEDTR	97.183	426	12	0	1	426	1	426	0.0	861

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000096	MsaG039962	0.813575	4.117541e-51	7.679658e-49
MsaG000326	MsaG039962	0.808634	4.792247e-50	7.918616e-48
MsaG000431	MsaG039962	0.828957	1.206630e-54	3.389395e-52
MsaG000519	MsaG039962	0.863503	4.723919e-64	4.205357e-61
MsaG000599	MsaG039962	0.801499	1.466354e-48	2.050878e-46
MsaG000609	MsaG039962	0.844089	1.753538e-58	7.798261e-56
MsaG000687	MsaG039962	0.832906	1.310235e-55	4.124781e-53
MsaG000802	MsaG039962	0.828944	1.215901e-54	3.414080e-52
MsaG000926	MsaG039962	0.827084	3.391210e-54	9.038516e-52
MsaG001237	MsaG039962	0.826711	4.160455e-54	1.097424e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039962	MtrunA17_Chr7g0264461	97.183	426	12	0	1	426	9	434	0.0	860
MsaG039962	MtrunA17_Chr1g0180951	79.302	430	81	6	1	426	1	426	0.0	692
MsaG039962	MtrunA17_Chr4g0031601	55.928	388	150	5	1	374	1	381	3.19e-151	436
MsaG039962	MtrunA17_Chr8g0336581	58.360	317	132	0	58	374	48	364	4.71e-138	402
MsaG039962	MtrunA17_Chr4g0055301	49.740	384	166	4	1	379	1	362	1.61e-129	378
MsaG039962	MtrunA17_Chr5g0399981	55.016	309	138	1	66	374	44	351	6.52e-124	363
MsaG039962	MtrunA17_Chr7g0216551	48.396	374	173	7	2	367	43	404	1.26e-114	344
MsaG039962	MtrunA17_Chr8g0362661	54.455	303	129	3	69	367	117	414	9.94e-114	342
MsaG039962	MtrunA17_Chr5g0416011	54.125	303	130	3	69	367	119	416	5.08e-113	340
MsaG039962	MtrunA17_Chr4g0064201	52.548	314	139	4	59	368	84	391	1.22e-111	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039962	AT3G09830.2	72.632	380	100	2	1	379	1	377	0.0	571
MsaG039962	AT3G09830.3	72.632	380	100	2	1	379	1	377	0.0	571
MsaG039962	AT3G09830.1	72.632	380	100	2	1	379	1	377	0.0	571
MsaG039962	AT5G03320.2	64.896	433	131	6	1	426	1	419	0.0	562
MsaG039962	AT5G03320.1	64.896	433	131	6	1	426	1	419	0.0	562
MsaG039962	AT2G39110.1	60.000	410	148	7	1	406	16	413	8.36e-161	460
MsaG039962	AT2G39110.2	60.000	410	148	7	1	406	1	398	1.12e-160	459
MsaG039962	AT2G28940.2	52.155	464	181	12	1	426	1	461	4.53e-157	452
MsaG039962	AT2G28940.1	58.750	320	109	7	127	426	26	342	2.71e-130	379
MsaG039962	AT5G47070.1	55.305	311	135	2	65	374	65	372	2.57e-120	356

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Find 113 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTTCAACTGATAT+TGG	0.242830	7:+95064098	MsaT039962.1:CDS
AAAGGCTTGCAATCCGCGTC+TGG	0.447427	7:+95061470	MsaT039962.1:CDS
AAATGAAGAACGCAAAGAAG+CGG	0.597349	7:+95064328	MsaT039962.1:CDS
AAGAATGATGTATGGAGCTA+CGG	0.568634	7:+95063970	MsaT039962.1:CDS
AAGTGCTTTCCATTCCACTC+TGG	0.585631	7:+95061428	MsaT039962.1:CDS
AATAACCAATTACCTTCTCT+AGG	0.526175	7:-95064366	None:intergenic
AATCTCCTATTCCATGGGAG+AGG	0.520478	7:-95063181	None:intergenic
AATGAAGAACGCAAAGAAGC+GGG	0.551419	7:+95064329	MsaT039962.1:CDS
AATGCAAAGCTATCAGACTT+TGG	0.455491	7:+95063512	MsaT039962.1:CDS
ACATCTTCTACCTTCAACAT+CGG	0.551908	7:-95061516	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	95061425	95064422	95061425	ID=MsaG039962
Chr7	mRNA	95061425	95064422	95061425	ID=MsaT039962.1;Parent=MsaG039962
Chr7	exon	95061425	95061808	95061425	ID=MsaT039962.1.exon1;Parent=MsaT039962.1
Chr7	CDS	95061425	95061808	95061425	ID=cds.MsaT039962.1;Parent=MsaT039962.1
Chr7	exon	95063004	95063264	95063004	ID=MsaT039962.1.exon2;Parent=MsaT039962.1
Chr7	CDS	95063004	95063264	95063004	ID=cds.MsaT039962.1;Parent=MsaT039962.1
Chr7	exon	95063461	95063583	95063461	ID=MsaT039962.1.exon3;Parent=MsaT039962.1
Chr7	CDS	95063461	95063583	95063461	ID=cds.MsaT039962.1;Parent=MsaT039962.1
Chr7	exon	95063910	95064422	95063910	ID=MsaT039962.1.exon4;Parent=MsaT039962.1
Chr7	CDS	95063910	95064422	95063910	ID=cds.MsaT039962.1;Parent=MsaT039962.1

Gene Sequence

>MsaT039962.1

ATGAAGTGCTTTCCATTCCACTCTGGCGATAAGAAAGATGAACCGAAAGGCTTGCAATCCGCGTCTGGCCGTTCCGACAGTTCCACATATGCCGATGTTGAAGGTAGAAGATGTGGTTCTGAATTGAATTCTCAGGATGTCTCGGATAGTGGCAGCGTGGAATCCCTGAGGAGGAATGCACCTCCTAATTTGTCCCAAAGACCTAGTAATCTTAGAGTGTTCACTGTCTCTGAACTGAAATCAGCCACGAAGAATTTCAGTCGATCGGTTATGCTTGGAGAGGGTGGGTTCGGGTGTGTTTATCAGGGAGTAATTAGAAGTGTAGATGATCCATCTAGTAGAATTGAGGTTGCGGTTAAACAACTTAGTAAAAGAGGAGTGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTTCTGGGAATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATATTGTGCCGATGATGATGAAAGAGGAATCCAACGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGAGCAGAGACTCCTCTCCCATGGAATAGGAGATTAAAAATAGCACACGACGCGGCTCGTGGATTGACATACCTGCACGAGGAAATGGATTTTCAGATAATTTTCCGAGATTTCAAATCTTCAAATATCCTTTTGGATGATCAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCGAGACTGGGACCATCGGATGGACTAACTCATGTTTCAACAGCGGTTGTTGGAACAATGGGGTATGCAGCTCCTGAGTATCTCCAAACTGGACGCCTTACATCAAAGAATGATGTATGGAGCTACGGTGTTTTCCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCGCCCCAAGGGTGAACAAAAATTATTGGAATGGATAAAGCCATACCTATCAGATACAAAGAAATTTCAACTGATATTGGATCCAAGACTTGATAAGAAACAAGTTATCAGATCAGCACAGAGACTTGCTACGATAGCTAACCGATGTTTAGTTAAAAACCCGAAGAATCGGCCAAAGATGAGTGAGGTTTTGGAAATGGTGAATGGAATAGTAGAATCATCATCCGACACTAATTCACAACTACCCTCAAAGAATGTTTCAAGAATAGAAGTTTATCACGAAACTGAAATGAAGAACGCAAAGAAGCGGGCCATGGATCAGAAGCCTAGAGAAGGTAATTGGTTATTTAGGTTGTGGAGACCAAAGCTTATAAGAACGTGA

Protein sequence

>MsaT039962.1

MKCFPFHSGDKKDEPKGLQSASGRSDSSTYADVEGRRCGSELNSQDVSDSGSVESLRRNAPPNLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYQGVIRSVDDPSSRIEVAVKQLSKRGVQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRAETPLPWNRRLKIAHDAARGLTYLHEEMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYLQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIKPYLSDTKKFQLILDPRLDKKQVIRSAQRLATIANRCLVKNPKNRPKMSEVLEMVNGIVESSSDTNSQLPSKNVSRIEVYHETEMKNAKKRAMDQKPREGNWLFRLWRPKLIRT*