AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG039989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039989 MtrunA17_Chr7g0264641 89.123 285 16 2 1 285 1 270 9.39e-168 465
MsaG039989 MtrunA17_Chr2g0327351 46.894 322 122 10 1 287 1 308 2.15e-76 235
MsaG039989 MtrunA17_Chr4g0028311 81.667 120 22 0 1 120 1 120 3.04e-75 233
MsaG039989 MtrunA17_Chr1g0152011 79.832 119 24 0 1 119 1 119 2.40e-73 228
MsaG039989 MtrunA17_Chr5g0400821 70.139 144 37 1 1 144 1 138 3.02e-73 227
MsaG039989 MtrunA17_Chr3g0135311 70.803 137 39 1 1 137 1 136 4.13e-72 225
MsaG039989 MtrunA17_Chr4g0054391 80.000 110 22 0 1 110 1 110 5.58e-68 213
MsaG039989 MtrunA17_Chr1g0151941 57.542 179 67 2 1 179 1 170 2.92e-67 209
MsaG039989 MtrunA17_Chr4g0072751 81.081 111 21 0 1 111 1 111 4.48e-67 213
MsaG039989 MtrunA17_Chr6g0487491 66.176 136 38 1 1 128 1 136 5.55e-61 194
MsaG039989 MtrunA17_Chr6g0452271 65.833 120 40 1 1 120 1 119 2.12e-56 184
MsaG039989 MtrunA17_Chr3g0103281 65.000 120 41 1 1 120 1 119 6.51e-54 178
MsaG039989 MtrunA17_Chr3g0115821 61.667 120 45 1 1 120 1 119 5.07e-53 176
MsaG039989 MtrunA17_Chr6g0453471 56.291 151 63 3 1 150 1 149 6.53e-53 176
MsaG039989 MtrunA17_Chr5g0410961 62.500 120 44 1 1 120 1 119 7.26e-53 176
MsaG039989 MtrunA17_Chr4g0039971 61.667 120 45 1 1 120 2 120 2.56e-52 174
MsaG039989 MtrunA17_Chr7g0217741 56.000 150 62 3 1 150 1 146 4.33e-52 172
MsaG039989 MtrunA17_Chr2g0281071 61.983 121 44 2 1 120 1 120 7.95e-52 173
MsaG039989 MtrunA17_Chr4g0048511 60.331 121 46 2 1 120 1 120 1.16e-50 170
MsaG039989 MtrunA17_Chr1g0203411 60.684 117 45 1 1 117 1 116 2.01e-50 168
MsaG039989 MtrunA17_Chr7g0217221 59.843 127 50 1 1 127 1 126 3.80e-50 166
MsaG039989 MtrunA17_Chr4g0060721 61.538 117 44 1 1 117 2 117 7.62e-50 167
MsaG039989 MtrunA17_Chr7g0254411 53.503 157 59 4 1 157 1 143 3.83e-49 166
MsaG039989 MtrunA17_Chr4g0042671 61.667 120 45 1 1 120 1 119 5.11e-49 167
MsaG039989 MtrunA17_Chr3g0092401 59.350 123 49 1 1 123 2 123 6.08e-49 164
MsaG039989 MtrunA17_Chr2g0323411 59.322 118 47 1 1 118 1 117 6.97e-49 165
MsaG039989 MtrunA17_Chr7g0275911 58.120 117 48 1 1 117 1 116 8.31e-49 162
MsaG039989 MtrunA17_Chr8g0349261 58.678 121 49 1 1 120 1 121 1.63e-48 163
MsaG039989 MtrunA17_Chr8g0346561 58.974 117 47 1 1 117 1 116 1.78e-48 163
MsaG039989 MtrunA17_Chr4g0037141 56.780 118 50 1 1 118 1 117 1.92e-48 162
MsaG039989 MtrunA17_Chr1g0187761 59.504 121 48 1 1 121 1 120 3.02e-48 161
MsaG039989 MtrunA17_Chr5g0395281 58.333 120 49 1 1 120 1 119 7.99e-48 161
MsaG039989 MtrunA17_Chr3g0131121 57.265 117 49 1 1 117 1 116 2.65e-47 160
MsaG039989 MtrunA17_Chr1g0167691 38.554 249 129 6 1 234 1 240 2.73e-47 159
MsaG039989 MtrunA17_Chr5g0435101 57.627 118 49 1 3 120 2 118 3.68e-47 157
MsaG039989 MtrunA17_Chr4g0068061 47.945 146 75 1 1 146 1 145 5.44e-47 160
MsaG039989 MtrunA17_Chr7g0261281 44.382 178 97 2 1 177 1 177 7.36e-47 158
MsaG039989 MtrunA17_Chr8g0385321 58.974 117 47 1 1 117 1 116 8.31e-47 159
MsaG039989 MtrunA17_Chr1g0167661 56.693 127 52 2 1 125 1 126 9.33e-47 157
MsaG039989 MtrunA17_Chr4g0070611 51.111 135 65 1 1 135 1 134 2.25e-46 157
MsaG039989 MtrunA17_Chr6g0453211 62.162 111 41 1 1 111 1 110 3.29e-46 157
MsaG039989 MtrunA17_Chr4g0070641 47.973 148 76 1 1 148 1 147 4.06e-46 153
MsaG039989 MtrunA17_Chr7g0274581 56.410 117 50 1 1 117 1 116 4.36e-46 154
MsaG039989 MtrunA17_Chr3g0121241 57.018 114 48 1 5 118 35 147 6.88e-46 156
MsaG039989 MtrunA17_Chr8g0387421 58.120 117 48 1 1 117 1 116 1.84e-45 155
MsaG039989 MtrunA17_Chr4g0057031 56.667 120 51 1 1 120 1 119 2.17e-45 154
MsaG039989 MtrunA17_Chr1g0193371 58.974 117 47 1 1 117 1 116 2.82e-45 156
MsaG039989 MtrunA17_Chr4g0022931 40.086 232 106 7 1 200 1 231 3.43e-45 154
MsaG039989 MtrunA17_Chr5g0434571 43.367 196 105 4 1 196 37 226 5.89e-45 155
MsaG039989 MtrunA17_Chr7g0228891 51.095 137 64 2 1 135 1 136 1.24e-44 152
MsaG039989 MtrunA17_Chr3g0110351 57.500 120 50 1 1 120 1 119 1.24e-44 153
MsaG039989 MtrunA17_Chr1g0193801 57.265 117 49 1 1 117 1 116 3.58e-44 154
MsaG039989 MtrunA17_Chr4g0058631 55.085 118 52 1 1 118 1 117 4.11e-44 153
MsaG039989 MtrunA17_Chr4g0022891 57.895 114 47 1 1 114 1 113 1.14e-43 149
MsaG039989 MtrunA17_Chr7g0270891 57.265 117 49 1 1 117 1 116 1.47e-43 152
MsaG039989 MtrunA17_Chr5g0397231 57.658 111 46 1 1 111 1 110 1.83e-43 151
MsaG039989 MtrunA17_Chr2g0323351 55.085 118 52 1 1 118 1 117 1.98e-43 148
MsaG039989 MtrunA17_Chr3g0117091 55.932 118 51 1 1 118 1 117 2.00e-43 151
MsaG039989 MtrunA17_Chr2g0311221 58.182 110 45 1 2 111 4 112 2.15e-43 150
MsaG039989 MtrunA17_Chr8g0342541 56.303 119 51 1 1 119 1 118 2.58e-43 151
MsaG039989 MtrunA17_Chr4g0022901 55.462 119 51 2 1 118 1 118 3.54e-43 148
MsaG039989 MtrunA17_Chr2g0330041 55.462 119 52 1 1 119 1 118 4.97e-43 151
MsaG039989 MtrunA17_Chr8g0342521 54.622 119 53 1 1 119 1 118 2.43e-42 148
MsaG039989 MtrunA17_Chr1g0211161 56.034 116 50 1 3 118 4 118 2.75e-42 145
MsaG039989 MtrunA17_Chr7g0271241 60.000 110 43 1 1 110 1 109 3.25e-42 149
MsaG039989 MtrunA17_Chr8g0342481 53.782 119 55 0 1 119 1 119 4.73e-42 149
MsaG039989 MtrunA17_Chr4g0022911 53.782 119 53 2 1 118 1 118 6.04e-42 145
MsaG039989 MtrunA17_Chr4g0044421 48.322 149 67 4 3 145 2 146 1.45e-41 142
MsaG039989 MtrunA17_Chr1g0194951 53.333 120 55 1 1 120 1 119 8.32e-41 145
MsaG039989 MtrunA17_Chr2g0309911 51.515 132 57 2 6 137 5 129 1.24e-40 143
MsaG039989 MtrunA17_Chr4g0022881 53.043 115 53 1 1 115 1 114 5.28e-40 139
MsaG039989 MtrunA17_Chr7g0269831 55.000 120 53 1 1 120 1 119 6.10e-40 142
MsaG039989 MtrunA17_Chr1g0203441 55.085 118 51 2 1 117 1 117 2.96e-39 138
MsaG039989 MtrunA17_Chr3g0099131 56.075 107 46 1 10 116 39 144 1.78e-38 142
MsaG039989 MtrunA17_Chr4g0032401 33.214 280 135 8 12 280 17 255 6.57e-38 136
MsaG039989 MtrunA17_Chr3g0080861 48.819 127 59 2 12 138 37 157 8.60e-38 139
MsaG039989 MtrunA17_Chr6g0450101 47.445 137 67 3 1 135 1 134 1.67e-37 132
MsaG039989 MtrunA17_Chr5g0417821 53.211 109 50 1 12 120 7 114 6.02e-37 132
MsaG039989 MtrunA17_Chr8g0354661 46.212 132 65 2 12 143 37 162 8.55e-37 137
MsaG039989 MtrunA17_Chr4g0055981 55.556 108 47 1 9 116 52 158 8.94e-37 130
MsaG039989 MtrunA17_Chr2g0328771 50.000 114 56 1 12 125 20 132 8.96e-37 133
MsaG039989 MtrunA17_Chr2g0322521 54.955 111 49 1 9 119 26 135 1.50e-36 134
MsaG039989 MtrunA17_Chr6g0470971 55.455 110 48 1 7 116 9 117 1.64e-36 131
MsaG039989 MtrunA17_Chr3g0088461 51.818 110 52 1 8 117 18 126 2.63e-36 132
MsaG039989 MtrunA17_Chr4g0042611 60.674 89 34 1 1 89 1 88 3.16e-36 124
MsaG039989 MtrunA17_Chr7g0228231 51.695 118 56 1 10 127 12 128 3.69e-36 128
MsaG039989 MtrunA17_Chr5g0434931 53.704 108 49 1 12 119 35 141 2.98e-35 128
MsaG039989 MtrunA17_Chr1g0209661 39.691 194 104 5 12 199 27 213 3.97e-35 128
MsaG039989 MtrunA17_Chr7g0240821 55.769 104 45 1 17 120 6 108 4.09e-35 126
MsaG039989 MtrunA17_Chr8g0343831 52.991 117 50 2 1 117 1 112 4.70e-35 127
MsaG039989 MtrunA17_Chr5g0434911 51.327 113 54 1 7 119 16 127 9.40e-35 126
MsaG039989 MtrunA17_Chr1g0186061 54.808 104 46 1 13 116 21 123 1.55e-34 125
MsaG039989 MtrunA17_Chr7g0220341 48.227 141 66 3 12 146 25 164 1.84e-34 125
MsaG039989 MtrunA17_Chr1g0168661 53.846 104 47 1 13 116 22 124 4.62e-34 124
MsaG039989 MtrunA17_Chr7g0228991 44.218 147 77 2 12 154 29 174 5.63e-34 124
MsaG039989 MtrunA17_Chr1g0180391 46.667 120 63 1 10 129 17 135 5.72e-34 123
MsaG039989 MtrunA17_Chr1g0192411 51.376 109 52 1 8 116 8 115 1.06e-33 127
MsaG039989 MtrunA17_Chr5g0434831 53.271 107 49 1 12 118 7 112 1.66e-33 121
MsaG039989 MtrunA17_Chr1g0194301 50.459 109 53 1 8 116 29 136 2.66e-33 123
MsaG039989 MtrunA17_Chr1g0194291 50.435 115 56 1 2 116 11 124 9.19e-33 121
MsaG039989 MtrunA17_Chr5g0434841 52.336 107 50 1 12 118 20 125 2.02e-32 121
MsaG039989 MtrunA17_Chr8g0360111 54.902 102 45 1 12 113 25 125 4.07e-32 119
MsaG039989 MtrunA17_Chr5g0440781 50.467 107 51 2 10 115 10 115 4.46e-32 117
MsaG039989 MtrunA17_Chr5g0440761 50.467 107 51 2 10 115 10 115 1.69e-31 118
MsaG039989 MtrunA17_Chr5g0441141 50.467 107 51 2 10 115 10 115 1.69e-31 118
MsaG039989 MtrunA17_Chr2g0294811 54.839 93 41 1 1 93 1 92 4.55e-31 112
MsaG039989 MtrunA17_Chr1g0154031 47.222 108 56 1 12 119 76 182 6.89e-31 119
MsaG039989 MtrunA17_Chr2g0293911 50.000 108 53 1 8 115 20 126 2.61e-30 116
MsaG039989 MtrunA17_Chr4g0068921 50.000 108 53 1 8 115 20 126 3.24e-30 112
MsaG039989 MtrunA17_Chr5g0441131 50.467 107 51 2 10 115 7 112 3.70e-30 112
MsaG039989 MtrunA17_Chr2g0327821 47.222 108 56 1 9 116 3 109 3.80e-30 113
MsaG039989 MtrunA17_Chr3g0099141 55.682 88 38 1 8 95 36 122 4.70e-30 110
MsaG039989 MtrunA17_Chr5g0401731 50.485 103 49 2 14 116 15 115 1.66e-29 114
MsaG039989 MtrunA17_Chr7g0247131 60.000 75 30 0 46 120 11 85 2.25e-29 112
MsaG039989 MtrunA17_Chr4g0053431 44.167 120 65 2 14 133 5 122 6.53e-29 111
MsaG039989 MtrunA17_Chr4g0013361 44.167 120 63 3 8 126 6 122 6.99e-29 111
MsaG039989 MtrunA17_Chr5g0395221 53.933 89 40 1 1 89 1 88 1.21e-28 105
MsaG039989 MtrunA17_Chr8g0342511 55.172 87 38 1 1 87 1 86 1.71e-28 105
MsaG039989 MtrunA17_Chr8g0334881 47.706 109 55 2 8 115 6 113 3.07e-28 110
MsaG039989 MtrunA17_Chr8g0342461 52.222 90 43 0 1 90 1 90 4.15e-28 105
MsaG039989 MtrunA17_Chr2g0323321 43.443 122 59 4 1 122 1 112 5.42e-28 104
MsaG039989 MtrunA17_Chr8g0342531 53.333 90 41 1 1 90 1 89 1.27e-27 105
MsaG039989 MtrunA17_Chr4g0030881 45.045 111 53 2 13 116 8 117 1.35e-27 107
MsaG039989 MtrunA17_Chr8g0342471 52.222 90 43 0 1 90 1 90 1.43e-27 103
MsaG039989 MtrunA17_Chr6g0454921 50.485 103 49 2 14 116 15 115 1.58e-27 105
MsaG039989 MtrunA17_Chr3g0133601 47.706 109 55 2 8 116 31 137 5.78e-27 105
MsaG039989 MtrunA17_Chr4g0008551 47.573 103 52 2 14 116 38 138 8.49e-27 107
MsaG039989 MtrunA17_Chr7g0229131 38.636 132 77 1 46 177 5 132 8.09e-25 97.8
MsaG039989 MtrunA17_Chr5g0434901 58.571 70 29 0 45 114 5 74 2.81e-23 92.0
MsaG039989 MtrunA17_Chr3g0093811 55.814 86 35 1 38 120 4 89 1.25e-22 94.4
MsaG039989 MtrunA17_Chr5g0425591 48.837 86 42 2 10 94 7 91 1.54e-22 89.4
MsaG039989 MtrunA17_Chr5g0429661 42.718 103 57 2 14 116 122 222 2.84e-22 94.7
MsaG039989 MtrunA17_Chr6g0480581 27.948 229 153 5 14 233 4 229 5.70e-22 92.0
MsaG039989 MtrunA17_Chr7g0229101 59.420 69 28 0 46 114 5 73 7.61e-22 90.9
MsaG039989 MtrunA17_Chr4g0058991 40.741 108 62 2 9 116 204 309 3.69e-21 92.8
MsaG039989 MtrunA17_Chr4g0042501 40.870 115 61 3 2 116 98 205 3.97e-21 92.4
MsaG039989 MtrunA17_Chr5g0417621 36.667 120 74 2 14 133 134 251 3.37e-20 89.7
MsaG039989 MtrunA17_Chr6g0453751 46.739 92 39 3 12 94 20 110 4.72e-20 84.0
MsaG039989 MtrunA17_Chr6g0460661 41.837 98 55 2 14 111 16 111 4.91e-20 84.7
MsaG039989 MtrunA17_Chr5g0437321 43.000 100 55 2 14 113 19 116 9.22e-20 87.0
MsaG039989 MtrunA17_Chr7g0254261 34.884 172 99 5 14 185 89 247 1.18e-19 87.4
MsaG039989 MtrunA17_Chr3g0125801 30.851 188 118 5 8 195 10 185 1.68e-19 86.3
MsaG039989 MtrunA17_Chr3g0117511 38.889 108 64 2 9 116 178 283 6.30e-19 86.3
MsaG039989 MtrunA17_Chr7g0238631 42.308 104 58 2 14 117 113 214 8.56e-19 86.3
MsaG039989 MtrunA17_Chr3g0139671 38.462 104 62 2 14 117 85 186 1.59e-17 82.8
MsaG039989 MtrunA17_Chr6g0460671 38.835 103 61 2 14 116 99 199 2.82e-17 80.9
MsaG039989 MtrunA17_Chr7g0228531 38.136 118 69 4 11 127 217 331 5.29e-17 80.5
MsaG039989 MtrunA17_Chr1g0157731 38.462 104 62 2 14 117 91 192 7.55e-17 80.9
MsaG039989 MtrunA17_Chr7g0228401 41.379 87 49 2 25 111 290 374 8.13e-17 80.1
MsaG039989 MtrunA17_Chr5g0397841 42.268 97 54 2 14 110 110 204 3.27e-16 78.6
MsaG039989 MtrunA17_Chr8g0362231 42.000 100 56 2 17 116 25 122 4.44e-16 77.8
MsaG039989 MtrunA17_Chr7g0238651 28.571 203 123 4 17 197 10 212 8.13e-16 76.6
MsaG039989 MtrunA17_Chr5g0416341 40.000 100 58 2 17 116 29 126 4.07e-15 75.1
MsaG039989 MtrunA17_Chr1g0193901 57.627 59 23 2 12 69 11 68 4.82e-15 70.1
MsaG039989 MtrunA17_Chr1g0193891 57.627 59 23 2 12 69 11 68 4.82e-15 70.1
MsaG039989 MtrunA17_Chr1g0193871 57.627 59 23 2 12 69 11 68 4.82e-15 70.1
MsaG039989 MtrunA17_Chr1g0193881 57.627 59 23 2 12 69 11 68 4.82e-15 70.1
MsaG039989 MtrunA17_Chr7g0228481 38.739 111 60 4 11 116 217 324 5.69e-15 74.7
MsaG039989 MtrunA17_Chr1g0177901 42.308 78 45 0 34 111 12 89 2.50e-14 70.5
MsaG039989 MtrunA17_Chr7g0247141 57.447 47 20 0 1 47 1 47 1.56e-13 64.3
MsaG039989 MtrunA17_Chr7g0233061 33.333 108 56 3 10 111 176 273 4.24e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG039989 AT2G36890.1 80.672 119 23 0 1 119 1 119 1.36e-72 225
MsaG039989 AT2G36890.2 80.672 119 23 0 1 119 42 160 2.57e-72 226
MsaG039989 AT5G65790.1 72.263 137 36 1 1 135 1 137 2.68e-72 227
MsaG039989 AT5G57620.1 79.832 119 24 0 1 119 1 119 3.22e-72 225
MsaG039989 AT3G49690.1 79.661 118 24 0 1 118 1 118 4.88e-71 222
MsaG039989 AT4G37780.1 75.630 119 29 0 1 119 1 119 6.89e-69 216
MsaG039989 AT5G23000.1 76.271 118 28 0 1 118 1 118 1.97e-68 216
MsaG039989 AT5G56110.1 65.000 120 41 1 1 120 1 119 1.34e-54 180
MsaG039989 AT3G01140.2 60.606 132 46 2 1 127 1 131 1.43e-53 178
MsaG039989 AT5G15310.4 63.333 120 43 1 1 120 1 119 4.55e-53 173
MsaG039989 AT5G15310.1 58.993 139 55 2 1 139 1 137 7.22e-53 176
MsaG039989 AT5G15310.2 58.993 139 55 2 1 139 1 137 9.54e-53 175
MsaG039989 AT4G21440.1 60.833 120 46 1 1 120 1 119 6.02e-52 174
MsaG039989 AT4G05100.1 61.983 121 44 2 1 120 1 120 1.60e-51 172
MsaG039989 AT1G34670.1 61.667 120 45 1 1 120 1 119 1.87e-51 173
MsaG039989 AT4G28110.1 61.864 118 44 1 1 118 1 117 2.83e-51 170
MsaG039989 AT3G47600.1 62.602 123 45 1 1 123 1 122 3.43e-51 171
MsaG039989 AT5G16770.4 60.000 120 47 1 1 120 1 119 3.98e-51 171
MsaG039989 AT5G16770.3 60.000 120 47 1 1 120 1 119 3.98e-51 171
MsaG039989 AT3G02940.2 60.000 120 47 1 1 120 1 119 5.23e-51 170
MsaG039989 AT3G61250.1 60.000 120 47 1 1 120 1 119 9.12e-51 169
MsaG039989 AT5G16770.1 60.000 120 47 1 1 120 1 119 9.39e-51 170
MsaG039989 AT5G16770.2 60.000 120 47 1 1 120 1 119 9.39e-51 170
MsaG039989 AT1G35515.1 52.899 138 61 2 1 135 1 137 1.04e-50 166
MsaG039989 AT3G02940.1 60.000 120 47 1 1 120 1 119 1.10e-50 169
MsaG039989 AT3G02940.3 60.000 120 47 1 1 120 1 119 1.10e-50 169
MsaG039989 AT4G09460.1 45.198 177 89 3 1 170 1 176 1.74e-50 166
MsaG039989 AT3G01140.1 59.690 129 46 2 4 127 47 174 2.64e-50 171
MsaG039989 AT1G22640.1 49.673 153 75 2 1 152 1 152 5.57e-50 166
MsaG039989 AT4G17785.2 61.983 121 44 2 1 120 1 120 5.84e-50 169
MsaG039989 AT5G62470.2 60.976 123 47 1 1 123 1 122 6.02e-50 169
MsaG039989 AT1G74650.1 61.667 120 45 1 1 120 1 119 6.91e-50 168
MsaG039989 AT4G17785.1 61.983 121 44 2 1 120 1 120 6.99e-50 169
MsaG039989 AT5G65230.1 61.667 120 45 1 1 120 1 119 3.16e-49 166
MsaG039989 AT3G28910.1 58.594 128 52 1 1 128 1 127 3.63e-49 166
MsaG039989 AT3G28470.1 65.766 111 37 1 1 111 1 110 5.16e-49 165
MsaG039989 AT5G60890.1 61.538 117 44 1 1 117 1 116 7.62e-49 164
MsaG039989 AT5G10280.1 58.333 120 49 1 1 120 1 119 1.22e-48 165
MsaG039989 AT5G62470.1 60.976 123 46 2 1 123 1 121 2.63e-48 164
MsaG039989 AT4G38620.1 47.771 157 76 2 1 152 1 156 3.44e-48 162
MsaG039989 AT2G31180.1 59.829 117 46 1 1 117 1 116 6.04e-48 160
MsaG039989 AT1G08810.1 60.684 117 45 1 1 117 1 116 1.13e-47 160
MsaG039989 AT1G16490.1 52.288 153 68 3 2 152 4 153 1.54e-47 160
MsaG039989 AT2G16720.1 42.286 175 94 2 1 169 1 174 2.23e-47 159
MsaG039989 AT1G63910.1 54.074 135 60 2 1 135 1 133 3.32e-47 162
MsaG039989 AT5G61420.2 60.169 118 46 1 1 118 1 117 3.44e-47 162
MsaG039989 AT3G23250.1 57.265 117 49 1 1 117 1 116 4.06e-47 159
MsaG039989 AT4G12350.1 50.323 155 75 2 1 154 1 154 7.59e-47 159
MsaG039989 AT1G79180.1 59.483 116 46 1 2 117 4 118 8.77e-47 159
MsaG039989 AT1G56160.1 59.483 116 46 1 2 117 4 118 1.91e-46 158
MsaG039989 AT5G26660.1 58.974 117 47 1 1 117 1 116 1.93e-46 159
MsaG039989 AT1G18570.1 58.824 119 47 2 1 118 1 118 5.41e-46 158
MsaG039989 AT5G07690.1 59.322 118 47 1 1 118 1 117 5.45e-46 158
MsaG039989 AT1G06180.1 59.829 117 46 1 1 117 1 116 6.39e-46 155
MsaG039989 AT4G34990.1 56.780 118 50 1 1 118 1 117 8.83e-46 155
MsaG039989 AT5G54230.1 60.000 120 47 1 1 120 1 119 1.64e-45 156
MsaG039989 AT4G01680.3 58.974 117 47 1 1 117 1 116 2.61e-45 153
MsaG039989 AT4G22680.1 57.500 120 50 1 1 120 1 119 4.12e-45 154
MsaG039989 AT4G01680.1 58.974 117 47 1 1 117 1 116 5.29e-45 155
MsaG039989 AT1G57560.1 58.475 118 48 1 1 118 1 117 6.92e-45 154
MsaG039989 AT1G57560.2 58.475 118 48 1 1 118 1 117 7.78e-45 153
MsaG039989 AT1G66230.1 50.676 148 67 2 1 143 1 147 1.26e-44 153
MsaG039989 AT5G49330.1 55.000 120 53 1 1 120 1 119 3.06e-44 153
MsaG039989 AT1G74080.1 40.183 219 105 6 1 217 1 195 5.38e-44 152
MsaG039989 AT5G07700.1 58.475 118 48 1 1 118 1 117 5.43e-44 152
MsaG039989 AT5G07700.2 58.475 118 48 1 1 118 1 117 5.43e-44 152
MsaG039989 AT3G13890.2 56.303 119 51 1 1 119 1 118 5.78e-44 153
MsaG039989 AT5G16600.1 57.500 120 50 1 1 120 1 119 8.73e-44 152
MsaG039989 AT1G09540.1 58.120 117 48 1 1 117 1 116 9.77e-44 153
MsaG039989 AT5G14340.1 56.410 117 50 1 1 117 13 128 1.16e-43 150
MsaG039989 AT3G62610.1 55.556 117 51 1 1 117 1 116 1.42e-43 152
MsaG039989 AT3G13540.1 53.913 115 52 1 4 118 15 128 3.02e-43 148
MsaG039989 AT5G62320.1 41.026 195 90 4 2 187 3 181 5.09e-43 147
MsaG039989 AT3G12820.1 56.034 116 50 1 3 118 5 119 1.53e-42 146
MsaG039989 AT2G47460.1 46.000 150 70 4 1 147 1 142 2.11e-42 149
MsaG039989 AT4G01680.2 53.488 129 47 2 1 117 1 128 1.69e-41 146
MsaG039989 AT3G13890.1 52.344 128 51 2 1 119 1 127 6.00e-41 145
MsaG039989 AT3G12720.1 53.509 114 52 1 6 119 16 128 1.67e-40 143
MsaG039989 AT1G18710.1 52.991 117 54 1 1 117 1 116 3.86e-40 140
MsaG039989 AT1G79180.2 46.309 149 46 2 2 117 4 151 4.01e-40 142
MsaG039989 AT2G32460.1 51.613 124 59 1 12 135 18 140 1.18e-39 144
MsaG039989 AT2G32460.2 51.613 124 59 1 12 135 6 128 1.32e-39 144
MsaG039989 AT1G74430.1 53.846 117 53 1 1 117 1 116 1.56e-39 139
MsaG039989 AT5G40330.1 36.923 195 94 3 13 207 13 178 5.69e-39 136
MsaG039989 AT5G06100.1 39.713 209 105 5 8 201 28 230 1.10e-38 141
MsaG039989 AT5G52600.1 58.333 108 44 1 9 116 9 115 1.46e-38 135
MsaG039989 AT5G06100.5 39.713 209 105 5 8 201 28 230 3.23e-38 141
MsaG039989 AT5G06100.2 39.713 209 105 5 8 201 28 230 3.23e-38 141
MsaG039989 AT5G06100.3 39.713 209 105 5 8 201 28 230 3.23e-38 141
MsaG039989 AT5G06100.4 39.713 209 105 5 8 201 28 230 3.23e-38 141
MsaG039989 AT5G14750.1 56.190 105 45 1 13 117 17 120 3.72e-38 134
MsaG039989 AT3G27810.1 40.556 180 95 4 9 178 17 194 1.08e-37 133
MsaG039989 AT3G27920.1 54.206 107 48 1 13 119 15 120 4.64e-37 132
MsaG039989 AT5G12870.1 53.211 109 50 1 12 120 18 125 5.45e-37 133
MsaG039989 AT4G26930.1 44.000 150 69 5 12 152 19 162 2.11e-36 134
MsaG039989 AT5G35550.1 41.139 158 89 2 9 163 11 167 2.47e-36 130
MsaG039989 AT3G11440.2 50.450 111 54 1 9 119 38 147 2.76e-36 135
MsaG039989 AT5G55020.1 51.887 106 50 1 12 117 26 130 6.17e-36 135
MsaG039989 AT3G01530.1 48.361 122 57 2 8 124 21 141 7.15e-36 128
MsaG039989 AT3G11440.3 50.450 111 54 1 9 119 38 147 9.96e-36 134
MsaG039989 AT3G11440.4 50.450 111 54 1 9 119 38 147 9.96e-36 134
MsaG039989 AT3G11440.1 50.450 111 54 1 9 119 38 147 9.96e-36 134
MsaG039989 AT3G08500.1 51.818 110 52 1 8 117 26 134 1.80e-35 130
MsaG039989 AT5G40350.1 41.143 175 96 3 10 179 15 187 2.41e-35 127
MsaG039989 AT1G48000.1 43.537 147 80 2 12 156 32 177 7.24e-35 126
MsaG039989 AT5G52260.1 52.542 118 55 1 1 118 1 117 2.56e-34 125
MsaG039989 AT1G66370.1 51.724 116 51 2 1 116 1 111 3.58e-34 124
MsaG039989 AT3G48920.1 45.238 126 68 1 9 134 15 139 4.40e-34 125
MsaG039989 AT4G13480.1 55.769 104 45 1 13 116 7 109 5.67e-34 124
MsaG039989 AT2G26960.1 50.467 107 52 1 9 115 17 122 1.09e-33 127
MsaG039989 AT4G25560.1 53.774 106 48 1 13 118 11 115 1.77e-33 124
MsaG039989 AT3G24310.1 53.846 104 47 1 13 116 19 121 2.16e-33 123
MsaG039989 AT3G30210.1 54.369 103 46 1 13 115 28 129 5.17e-33 122
MsaG039989 AT1G66380.1 47.619 126 60 2 12 137 8 127 7.82e-33 118
MsaG039989 AT1G56650.1 43.590 156 77 3 12 162 8 157 1.24e-32 120
MsaG039989 AT1G25340.1 50.893 112 54 1 10 121 16 126 1.96e-32 121
MsaG039989 AT1G66390.1 54.286 105 47 1 12 116 8 111 1.50e-31 118
MsaG039989 AT1G68320.1 48.182 110 56 1 12 121 19 127 5.15e-31 117
MsaG039989 AT2G47190.1 47.706 109 56 1 8 116 16 123 8.28e-31 116
MsaG039989 AT3G06490.1 50.926 108 52 1 8 115 15 121 4.64e-30 115
MsaG039989 AT3G53200.1 46.610 118 62 1 12 129 9 125 2.57e-29 112
MsaG039989 AT5G67300.1 47.788 113 57 2 10 122 2 112 3.67e-29 113
MsaG039989 AT5G59780.3 48.077 104 53 1 13 116 9 111 4.80e-29 111
MsaG039989 AT5G26660.2 60.811 74 29 0 44 117 12 85 4.93e-29 113
MsaG039989 AT3G46130.1 48.077 104 53 1 13 116 10 112 6.02e-29 111
MsaG039989 AT5G49620.1 49.074 108 54 1 8 115 22 128 1.29e-28 111
MsaG039989 AT3G50060.1 50.467 107 51 2 10 116 2 106 1.39e-28 111
MsaG039989 AT5G14750.3 58.228 79 30 1 39 117 11 86 2.25e-28 107
MsaG039989 AT3G47600.2 63.291 79 29 0 45 123 38 116 2.71e-28 111
MsaG039989 AT1G25340.2 48.214 112 52 2 10 121 16 121 5.80e-28 109
MsaG039989 AT1G25340.3 48.214 112 52 2 10 121 16 121 9.78e-28 109
MsaG039989 AT2G26950.1 43.269 104 58 1 9 112 13 115 1.69e-27 110
MsaG039989 AT4G37260.1 49.515 103 50 2 14 116 13 113 2.08e-27 108
MsaG039989 AT3G60460.1 46.296 108 56 2 9 115 8 114 2.92e-27 107
MsaG039989 AT3G27810.2 38.194 144 78 3 45 178 3 145 1.14e-26 103
MsaG039989 AT2G23290.1 49.515 103 50 2 14 116 13 113 1.27e-26 106
MsaG039989 AT5G35550.2 41.406 128 72 1 39 163 43 170 1.28e-25 102
MsaG039989 AT3G55730.1 48.544 103 51 2 14 116 56 156 3.37e-25 103
MsaG039989 AT5G49620.2 43.443 122 54 2 8 115 22 142 5.33e-25 102
MsaG039989 AT3G53200.2 51.163 86 42 0 44 129 7 92 5.56e-25 99.8
MsaG039989 AT1G66380.3 51.613 93 40 1 45 137 7 94 1.31e-24 95.5
MsaG039989 AT5G59780.2 54.795 73 33 0 44 116 18 90 1.57e-24 98.6
MsaG039989 AT5G40350.2 38.571 140 80 2 45 179 4 142 2.29e-24 97.1
MsaG039989 AT3G46130.4 54.795 73 33 0 44 116 18 90 2.98e-24 98.6
MsaG039989 AT3G46130.3 56.338 71 31 0 46 116 10 80 1.16e-23 96.7
MsaG039989 AT3G09230.1 43.810 105 57 2 14 118 55 157 1.34e-23 99.4
MsaG039989 AT3G12820.2 57.143 70 30 0 49 118 2 71 1.87e-23 95.1
MsaG039989 AT1G17950.1 29.130 230 136 8 14 226 5 224 2.32e-23 96.3
MsaG039989 AT3G27785.1 37.500 152 79 5 9 156 184 323 2.34e-23 99.4
MsaG039989 AT2G39880.1 45.631 103 54 2 14 116 50 150 3.43e-23 98.2
MsaG039989 AT1G18960.1 41.935 124 64 4 1 124 1 116 5.27e-23 96.7
MsaG039989 AT1G69560.1 41.284 109 62 2 9 117 102 208 4.58e-22 94.4
MsaG039989 AT5G40360.1 35.507 138 86 3 12 149 156 290 5.26e-22 94.7
MsaG039989 AT1G69560.2 41.284 109 62 2 9 117 118 224 6.00e-22 94.4
MsaG039989 AT4G18770.1 37.226 137 77 4 9 145 212 339 7.09e-21 92.0
MsaG039989 AT5G11050.1 36.522 115 71 2 11 125 102 214 7.11e-21 92.0
MsaG039989 AT5G17800.1 34.444 180 107 5 14 193 93 261 7.34e-21 90.9
MsaG039989 AT2G25230.1 42.056 107 60 2 9 115 21 125 1.13e-20 88.6
MsaG039989 AT5G58850.1 37.500 112 68 2 11 122 102 211 2.72e-20 90.5
MsaG039989 AT1G26780.1 40.777 103 59 2 14 116 98 198 4.86e-20 87.8
MsaG039989 AT1G73410.1 42.718 103 57 2 14 116 6 106 5.28e-20 87.0
MsaG039989 AT1G26780.2 40.777 103 59 2 14 116 98 198 6.98e-20 88.6
MsaG039989 AT1G22640.3 41.053 95 55 1 59 152 1 95 8.63e-20 85.5
MsaG039989 AT3G09370.2 42.718 103 57 2 14 116 135 235 9.73e-20 89.4
MsaG039989 AT3G09370.1 42.718 103 57 2 14 116 130 230 1.09e-19 89.0
MsaG039989 AT3G09370.3 42.718 103 57 2 14 116 143 243 1.30e-19 89.0
MsaG039989 AT1G73410.2 42.718 103 57 2 14 116 6 106 1.39e-19 85.1
MsaG039989 AT1G71030.2 52.174 69 33 0 52 120 5 73 1.69e-19 84.3
MsaG039989 AT1G71030.1 52.174 69 33 0 52 120 19 87 2.12e-19 84.3
MsaG039989 AT1G66380.2 46.429 84 44 1 12 95 8 90 2.68e-19 81.6
MsaG039989 AT5G02320.1 41.346 104 59 2 14 117 127 228 5.81e-19 87.0
MsaG039989 AT5G02320.2 41.346 104 59 2 14 117 127 228 5.81e-19 87.0
MsaG039989 AT5G02320.3 41.346 104 59 2 14 117 67 168 7.76e-19 86.7
MsaG039989 AT3G29020.1 37.500 104 63 2 14 117 65 166 2.53e-18 82.4
MsaG039989 AT3G29020.2 37.500 104 63 2 14 117 67 168 4.43e-18 82.8
MsaG039989 AT4G33450.1 37.037 108 66 2 9 116 14 119 7.32e-18 81.3
MsaG039989 AT5G14750.4 54.237 59 27 0 59 117 1 59 1.44e-17 78.2
MsaG039989 AT5G14750.2 54.237 59 27 0 59 117 1 59 1.44e-17 78.2
MsaG039989 AT5G11510.3 37.500 104 63 2 14 117 81 182 3.60e-17 82.0
MsaG039989 AT5G11510.1 37.500 104 63 2 14 117 81 182 3.60e-17 82.0
MsaG039989 AT5G11510.4 37.500 104 63 2 14 117 81 182 3.60e-17 82.0
MsaG039989 AT5G11510.5 37.500 104 63 2 14 117 81 182 4.07e-17 81.6
MsaG039989 AT5G11510.2 37.500 104 63 2 14 117 81 182 4.07e-17 82.0
MsaG039989 AT5G40430.1 37.383 107 64 2 9 115 49 152 9.88e-17 78.2
MsaG039989 AT4G32730.1 37.500 104 63 2 14 117 87 188 1.06e-16 80.5
MsaG039989 AT4G32730.5 37.500 104 63 2 14 117 87 188 1.15e-16 80.5
MsaG039989 AT4G32730.4 37.500 104 63 2 14 117 87 188 1.15e-16 80.5
MsaG039989 AT4G32730.3 37.500 104 63 2 14 117 87 188 1.15e-16 80.5
MsaG039989 AT4G32730.2 37.500 104 63 2 14 117 87 188 1.15e-16 80.5
MsaG039989 AT1G14350.2 42.000 100 56 2 17 116 28 125 2.43e-16 79.0
MsaG039989 AT1G14350.1 42.000 100 56 2 17 116 28 125 2.43e-16 79.0
MsaG039989 AT3G23250.2 52.542 59 28 0 59 117 1 59 4.75e-16 75.9
MsaG039989 AT2G02820.1 41.000 100 57 2 17 116 33 130 5.15e-16 78.2
MsaG039989 AT2G02820.2 41.000 100 57 2 17 116 33 130 6.79e-16 77.8
MsaG039989 AT2G02820.3 41.000 100 57 2 17 116 33 130 7.12e-16 77.0
MsaG039989 AT4G00540.2 35.185 108 67 2 12 117 101 207 3.31e-14 72.8
MsaG039989 AT4G00540.1 35.185 108 67 2 12 117 99 205 5.05e-14 72.0
MsaG039989 AT5G39700.1 35.780 109 68 2 9 117 51 157 4.13e-13 67.0
MsaG039989 AT2G37630.1 35.052 97 60 2 17 111 7 102 5.16e-13 68.9
MsaG039989 AT3G18100.1 30.282 142 81 3 12 153 544 667 4.16e-11 63.9
MsaG039989 AT3G18100.3 30.282 142 81 3 12 153 496 619 4.41e-11 63.9
MsaG039989 AT3G18100.4 30.496 141 80 3 13 153 384 506 5.52e-11 63.5
MsaG039989 AT3G18100.2 30.496 141 80 3 13 153 332 454 6.79e-11 63.2

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATGCTGGTAGTGTTAA+TGG 0.223530 7:-95419919 MsaT039989.1:CDS
GATCTATGACATGGCTGATT+TGG 0.304205 7:+95420049 None:intergenic
ATAATAGCATCTAAGTTAAA+AGG 0.330132 7:-95420381 MsaT039989.1:CDS
CTGGTAGTGTTAATGGATTA+TGG 0.348044 7:-95419912 MsaT039989.1:CDS
AACTCTCCATGCTTAATGTT+TGG 0.375083 7:+95421056 None:intergenic
TGCACCCTCTTTGCTAGCAT+TGG 0.383188 7:-95421008 MsaT039989.1:CDS
CAAGAGCTTGTTGAAGGAAA+TGG 0.411712 7:-95420027 MsaT039989.1:CDS
TGGTAGTGTTAATGGATTAT+GGG 0.425610 7:-95419911 MsaT039989.1:CDS
TCATACGATGATCACTCTAA+TGG 0.429336 7:-95420192 MsaT039989.1:CDS
AACATGGAACTGGAGGAAAC+TGG 0.440894 7:-95421294 MsaT039989.1:CDS
ACAATGATGTAAAGAACTAC+TGG 0.442145 7:-95420350 MsaT039989.1:CDS
CGCGGAATGAGAATGATTCA+TGG 0.466557 7:+95420299 None:intergenic
CACTCAGGTTTGACAAGGTG+TGG 0.467373 7:-95421116 MsaT039989.1:intron
GATAAAAGGGTAACTTGTTG+AGG 0.488023 7:+95420267 None:intergenic
TACATAGAGAAACATGGAAC+TGG 0.488674 7:-95421304 MsaT039989.1:CDS
ATAGATCAAGAGCTTGTTGA+AGG 0.495465 7:-95420033 MsaT039989.1:CDS
TGAAGAAGATGCAAAACTAA+AGG 0.500176 7:-95421329 MsaT039989.1:CDS
GACAAAGCTAATGTAAAGAA+AGG 0.502939 7:-95421364 MsaT039989.1:CDS
ACTTGATGATGTAGATGAGT+AGG 0.504140 7:+95420146 None:intergenic
TCTAATGGATCTTTCAGTAC+AGG 0.506455 7:-95420177 MsaT039989.1:CDS
AAGTTAATGTTCTCTAATGC+TGG 0.520204 7:-95419931 MsaT039989.1:CDS
TCTTTGCTAGCATTGGAAGC+AGG 0.522442 7:-95421001 MsaT039989.1:intron
GCTTCCAATGCTAGCAAAGA+GGG 0.543801 7:+95421004 None:intergenic
GCATCTTCTTCAGGAGACCA+TGG 0.563593 7:+95421340 None:intergenic
CTCAGACCAAACATTAAGCA+TGG 0.563901 7:-95421062 MsaT039989.1:CDS
GCAAGAGTTGTAGACTTCGA+TGG 0.573779 7:-95421094 MsaT039989.1:CDS
ACATTAGCTTTGTCACAGCA+AGG 0.580858 7:+95421373 None:intergenic
TTGTCTGTGAATGATAATGA+TGG 0.604791 7:+95420216 None:intergenic
CATGAATCATTCTCATTCCG+CGG 0.604897 7:-95420298 MsaT039989.1:CDS
CAAGCTCTTGATCTATGACA+TGG 0.614668 7:+95420040 None:intergenic
TCATCTATATCATAATCCAA+TGG 0.614704 7:+95419880 None:intergenic
TGCTTCCAATGCTAGCAAAG+AGG 0.618336 7:+95421003 None:intergenic
ATTATGGGGAGAAAATCCAT+TGG 0.620139 7:-95419896 MsaT039989.1:CDS
CTAATGTAAAGAAAGGTCCA+TGG 0.630839 7:-95421357 MsaT039989.1:CDS
ATAGAGAAACATGGAACTGG+AGG 0.632919 7:-95421301 MsaT039989.1:CDS
TGATTACATCTACAGTGAGG+TGG 0.656607 7:-95419965 MsaT039989.1:CDS
AAGGAGTACATAGAGAAACA+TGG 0.660933 7:-95421310 MsaT039989.1:CDS
GGTAGTGTTAATGGATTATG+GGG 0.672882 7:-95419910 MsaT039989.1:CDS
TTGTTGAGGTTTCATCTCCG+CGG 0.707736 7:+95420281 None:intergenic
TGTTGATTACATCTACAGTG+AGG 0.727616 7:-95419968 MsaT039989.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 95419813 95421407 95419813 ID=MsaG039989
Chr7 mRNA 95419813 95421407 95419813 ID=MsaT039989.1;Parent=MsaG039989
Chr7 exon 95419813 95420410 95419813 ID=MsaT039989.1.exon3;Parent=MsaT039989.1
Chr7 CDS 95419813 95420410 95419813 ID=cds.MsaT039989.1;Parent=MsaT039989.1
Chr7 exon 95421002 95421131 95421002 ID=MsaT039989.1.exon2;Parent=MsaT039989.1
Chr7 CDS 95421002 95421131 95421002 ID=cds.MsaT039989.1;Parent=MsaT039989.1
Chr7 exon 95421272 95421407 95421272 ID=MsaT039989.1.exon1;Parent=MsaT039989.1
Chr7 CDS 95421272 95421407 95421272 ID=cds.MsaT039989.1;Parent=MsaT039989.1
Gene Sequence

>MsaT039989.1

ATGGGAAGATCTCCTTGCTGTGACAAAGCTAATGTAAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGAGTACATAGAGAAACATGGAACTGGAGGAAACTGGATTACTCTGCCAAAAAAAGTTGGTTTGACAAGGTGTGGCAAGAGTTGTAGACTTCGATGGCTTAACTATCTCAGACCAAACATTAAGCATGGAGAGTTCTCTGACTCTGAAGATAAAATAATATGCACCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTAAGTTAAAAGGCAGAACTGACAATGATGTAAAGAACTACTGGAACACCAAGCTTAAGAAAAAGATTATGGCCATGAATCATTCTCATTCCGCGGAGATGAAACCTCAACAAGTTACCCTTTTATCCATCCTTCAAAACTCAACAAAATCATCTCCATCATTATCATTCACAGACAACTCATACGATGATCACTCTAATGGATCTTTCAGTACAGGTTCAATCTCCTACTCATCTACATCATCAAGTCTTTTGAGTGGAAATTCTTCTACTTCTGCAGCACAAGAAAGTTTCATTAGTCCCACTAAGAGTAATAGCAAAAACCAAATCAGCCATGTCATAGATCAAGAGCTTGTTGAAGGAAATGGTGATGCAACTTTTGTAGAGCAGAATAATATTGATTCTGTTGATTACATCTACAGTGAGGTGGAAGATAGTGAGAAGTTAATGTTCTCTAATGCTGGTAGTGTTAATGGATTATGGGGAGAAAATCCATTGGATTATGATATAGATGAAATTAAACAGCTAATAAACACTACTGCATCTACTAGTAGTTGCAACAACTTTTTGTTTGTTGACTAA
Protein sequence

>MsaT039989.1

MGRSPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWITLPKKVGLTRCGKSCRLRWLNYLRPNIKHGEFSDSEDKIICTLFASIGSRWSIIASKLKGRTDNDVKNYWNTKLKKKIMAMNHSHSAEMKPQQVTLLSILQNSTKSSPSLSFTDNSYDDHSNGSFSTGSISYSSTSSSLLSGNSSTSAAQESFISPTKSNSKNQISHVIDQELVEGNGDATFVEQNNIDSVDYIYSEVEDSEKLMFSNAGSVNGLWGENPLDYDIDEIKQLINTTASTSSCNNFLFVD*