AlfalfaGEDB | MsaG040058

M. sativa ssp. caerulea / MsaG040058

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040058	XP_013450070.1	97.585	414	8	2	1	412	42	455	0.0	821

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040058	tr\|A0A072U4N3\|A0A072U4N3_MEDTR	97.585	414	8	2	1	412	42	455	0.0	821

TFs/TRs:

Gene ID	Type	Classification
MsaG040058	TF	Trihelix

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000237	MsaG040058	0.819605	1.861555e-52	4.051404e-50
MsaG000426	MsaG040058	0.818930	2.648023e-52	5.662175e-50
MsaG000497	MsaG040058	0.835907	2.332012e-56	8.026367e-54
MsaG000976	MsaG040058	0.805246	2.475273e-49	3.774187e-47
MsaG001039	MsaG040058	0.801990	1.164311e-48	1.646690e-46
MsaG001286	MsaG040058	0.811646	1.082534e-50	1.924521e-48
MsaG001399	MsaG040058	0.801175	1.707515e-48	2.370683e-46
MsaG001558	MsaG040058	0.827867	2.204765e-54	6.006823e-52
MsaG001726	MsaG040058	0.818020	4.247179e-52	8.869599e-50
MsaG005055	MsaG040058	0.812770	6.172487e-51	1.128269e-48
MsaG005058	MsaG040058	0.814240	2.942154e-51	5.579779e-49
MsaG005239	MsaG040058	0.816751	8.173149e-52	1.651931e-49
MsaG005623	MsaG040058	0.850034	4.194839e-60	2.276015e-57
MsaG005632	MsaG040058	0.814704	2.325867e-51	4.462611e-49
MsaG007191	MsaG040058	0.812077	8.732698e-51	1.568965e-48
MsaG008523	MsaG040058	0.800168	2.733559e-48	3.709878e-46
MsaG009860	MsaG040058	0.808127	6.139835e-50	1.002226e-47
MsaG010365	MsaG040058	0.848274	1.287736e-59	6.580998e-57
MsaG010860	MsaG040058	0.838951	3.902394e-57	1.474286e-54
MsaG011612	MsaG040058	0.810543	1.872641e-50	3.240568e-48
MsaG011941	MsaG040058	0.821119	8.401897e-53	1.903399e-50
MsaG012262	MsaG040058	0.814002	3.318836e-51	6.256521e-49
MsaG012404	MsaG040058	0.804980	2.812973e-49	4.262626e-47
MsaG013881	MsaG040058	0.811770	1.017526e-50	1.814490e-48
MsaG015382	MsaG040058	0.820260	1.320770e-52	2.925085e-50
MsaG015527	MsaG040058	0.830868	4.150101e-55	1.231307e-52
MsaG016971	MsaG040058	0.836677	1.488885e-56	5.244474e-54
MsaG018397	MsaG040058	0.851298	1.857543e-60	1.052837e-57
MsaG018960	MsaG040058	0.821684	6.229366e-53	1.432539e-50
MsaG019308	MsaG040058	0.805687	2.002601e-49	3.085038e-47
MsaG020245	MsaG040058	0.832078	2.097361e-55	6.445759e-53
MsaG020716	MsaG040058	0.813445	4.395990e-51	8.172348e-49
MsaG021322	MsaG040058	0.814732	2.292177e-51	4.401071e-49
MsaG021463	MsaG040058	0.834091	6.656215e-56	2.169671e-53
MsaG021667	MsaG040058	0.803715	5.145152e-49	7.571503e-47
MsaG022979	MsaG040058	0.847709	1.840049e-59	9.227733e-57
MsaG024951	MsaG040058	0.821474	6.961400e-53	1.591962e-50
MsaG027182	MsaG040058	0.823665	2.166041e-53	5.254479e-51
MsaG027505	MsaG040058	0.840993	1.152765e-57	4.642636e-55
MsaG028419	MsaG040058	0.844843	1.101777e-58	5.022994e-56
MsaG028480	MsaG040058	0.832669	1.499959e-55	4.689102e-53
MsaG029070	MsaG040058	0.805486	2.206035e-49	3.382378e-47
MsaG029160	MsaG040058	0.845566	7.039637e-59	3.286413e-56
MsaG029200	MsaG040058	0.810875	1.588335e-50	2.770855e-48
MsaG029300	MsaG040058	0.808053	6.366959e-50	1.037448e-47
MsaG030192	MsaG040058	0.800927	1.917315e-48	2.647099e-46
MsaG030944	MsaG040058	0.808551	4.991602e-50	8.231478e-48
MsaG032491	MsaG040058	0.803149	6.731599e-49	9.777068e-47
MsaG032902	MsaG040058	0.817594	5.294263e-52	1.093514e-49
MsaG034218	MsaG040058	0.806635	1.267982e-49	1.997562e-47
MsaG035008	MsaG040058	0.822267	4.572424e-53	1.067965e-50
MsaG036068	MsaG040058	0.817448	5.707760e-52	1.174557e-49
MsaG037920	MsaG040058	0.807104	1.009920e-49	1.608667e-47
MsaG039251	MsaG040058	0.814520	2.553371e-51	4.876452e-49
MsaG040058	MsaG042000	0.802296	1.007560e-48	1.435052e-46
MsaG040058	MsaG044445	0.804361	3.782202e-49	5.649784e-47
MsaG040058	MsaG045251	0.856089	7.899038e-62	5.308790e-59
MsaG040058	MsaG046183	0.802044	1.134618e-48	1.606701e-46
MsaG040058	MsaG007511	0.815852	1.295708e-51	2.559345e-49
MsaG040058	MsaG011637	0.825397	8.508901e-54	2.163900e-51
MsaG040058	MsaG014392	0.815597	1.476514e-51	2.897683e-49
MsaG040058	MsaG019828	0.805693	1.997375e-49	3.077398e-47
MsaG040058	MsaG031801	0.813092	5.249407e-51	9.673108e-49
MsaG040058	MsaG036612	0.824958	1.079326e-53	2.711978e-51
MsaG040058	MsaG037076	0.809601	2.981250e-50	5.042332e-48
MsaG040058	MsaG037671	0.812790	6.109394e-51	1.117309e-48
MsaG040058	MsaG042513	0.808617	4.831865e-50	7.980789e-48
MsaG040058	MsaG043209	0.809284	3.484829e-50	5.848802e-48
MsaG040058	MsaG041852	0.827799	2.290011e-54	6.227113e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040058	MtrunA17_Chr7g0265561	97.585	414	8	2	1	412	42	455	0.0	821
MsaG040058	MtrunA17_Chr1g0179561	61.949	431	134	8	8	412	70	496	3.92e-150	434
MsaG040058	MtrunA17_Chr2g0328901	40.318	377	175	8	32	399	80	415	3.21e-78	248
MsaG040058	MtrunA17_Chr1g0201951	39.524	420	198	11	8	398	55	447	4.64e-77	246
MsaG040058	MtrunA17_Chr6g0463911	38.200	411	211	9	8	396	53	442	1.10e-73	237

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040058	AT3G10040.1	45.763	413	169	10	6	402	45	418	8.55e-100	304
MsaG040058	AT1G21200.1	57.407	162	61	3	32	188	84	242	1.33e-54	187
MsaG040058	AT1G21200.2	57.407	162	61	3	32	188	84	242	1.33e-54	187
MsaG040058	AT1G76870.2	50.273	183	81	4	7	188	34	207	1.33e-54	186
MsaG040058	AT1G76870.1	50.273	183	81	4	7	188	34	207	1.33e-54	186
MsaG040058	AT1G76870.3	50.273	183	81	4	7	188	34	207	1.33e-54	186

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAAACTTTGTTGGATACTA+TGG	0.197558	7:+96198616	MsaT040058.1:CDS
TCCAAAGGGATGATGGAAAA+AGG	0.229973	7:+96198482	MsaT040058.1:CDS
TGGTTTGTTGTTGTTGGTTT+TGG	0.247414	7:-96198216	None:intergenic
TGAAAATGAAAGGAAGAGTT+TGG	0.281655	7:+96199285	MsaT040058.1:CDS
AAAAGAGTTAATGATATTCT+TGG	0.286176	7:+96198563	MsaT040058.1:CDS
TCAAATGGGGTAGGGAGTTT+AGG	0.306322	7:+96198848	MsaT040058.1:CDS
AAGAAGAGGGTGGTGCAATT+AGG	0.323802	7:+96199154	MsaT040058.1:CDS
CAATGTTTGCATTCATCAAA+TGG	0.340659	7:+96198833	MsaT040058.1:CDS
GATGAAGATGAACCATGTTT+TGG	0.349130	7:+96198263	MsaT040058.1:CDS
TCAGGAGAAGGTGGTGGTTA+TGG	0.365147	7:+96198971	MsaT040058.1:CDS
AGCTTCTTCTTTCAACTTTG+CGG	0.379123	7:-96198645	None:intergenic
AATGTTTGCATTCATCAAAT+GGG	0.387098	7:+96198834	MsaT040058.1:CDS
AATGGTAAGACTCTTAATAA+TGG	0.395318	7:+96198358	MsaT040058.1:CDS
TGTTGAAAATCAAACTTTGT+TGG	0.398526	7:+96198607	MsaT040058.1:CDS
GAGTTTGGAGATTGATAGAA+TGG	0.398897	7:+96199300	MsaT040058.1:CDS
ATGAAAATATTGATCACTTA+AGG	0.402159	7:+96199014	MsaT040058.1:CDS
TTGTTGTGGTTTGTTGTTGT+TGG	0.407241	7:-96198222	None:intergenic
TTGAAACTGAAAGGTAGAAA+TGG	0.413834	7:+96198875	MsaT040058.1:CDS
AATGGTTTGTTACAAAAGAA+AGG	0.427323	7:+96198443	MsaT040058.1:CDS
TAGTAACAAAGAAAGGGAAA+TGG	0.428604	7:+96199249	MsaT040058.1:CDS
ATGAAGACGAAGACGATGAA+TGG	0.431143	7:+96198918	MsaT040058.1:CDS
GTTAATGATATTCTTGGTAA+AGG	0.448596	7:+96198569	MsaT040058.1:CDS
AGAACAGGTAAACTATCATA+TGG	0.455868	7:+96199180	MsaT040058.1:CDS
ATCAGTTTCCAAAGGGATGA+TGG	0.456043	7:+96198475	MsaT040058.1:CDS
GAAGAGGAAGAAGAAGAATC+AGG	0.456394	7:+96198953	MsaT040058.1:CDS
TGTTACAAAAGAAAGGGAAA+TGG	0.458567	7:+96198450	MsaT040058.1:CDS
CACCATGGCATAGAATGAAA+TGG	0.467516	7:+96198327	MsaT040058.1:CDS
GTTGCAAATTGTTGTTTCCA+TGG	0.468486	7:-96198733	None:intergenic
TGCTGTTGTTGCTGTTGTTG+TGG	0.468978	7:-96198797	None:intergenic
ATAATGGCTGTTTATTACAT+TGG	0.475736	7:+96198374	MsaT040058.1:CDS
AAGATGGAGTGAAGAGTTGT+TGG	0.482165	7:+96199113	MsaT040058.1:CDS
TATCATAACAGTTGTGGCCA+TGG	0.484474	7:+96198716	MsaT040058.1:CDS
TGGAGGAGGAGAAGATGAAG+AGG	0.485154	7:+96198895	MsaT040058.1:CDS
AATTTAGTAGTAACAAAGAA+AGG	0.489528	7:+96199242	MsaT040058.1:CDS
ATGGTTTGTTACAAAAGAAA+GGG	0.489534	7:+96198444	MsaT040058.1:CDS
TGATTGATGAGGTTGATCAT+AGG	0.498163	7:-96198168	None:intergenic
GTCCATTTCATTCTATGCCA+TGG	0.498446	7:-96198329	None:intergenic
GGTGCAATTAGGAGAAGAAC+AGG	0.499399	7:+96199165	MsaT040058.1:CDS
AGTTCAATGATTTGAACAAA+AGG	0.501403	7:+96198537	MsaT040058.1:CDS
TGAAGACGAAGACGATGAAT+GGG	0.509736	7:+96198919	MsaT040058.1:CDS
AAAAGCAATGGATGAAGAAG+AGG	0.518548	7:+96199140	MsaT040058.1:CDS
GAAGAATCAGGAGAAGGTGG+TGG	0.520051	7:+96198965	MsaT040058.1:CDS
AGGTTGATGTTGATTTGTTG+TGG	0.522948	7:-96198236	None:intergenic
TGCATTCATCAAATGGGGTA+GGG	0.525561	7:+96198840	MsaT040058.1:CDS
GAAGAAGAATCAGGAGAAGG+TGG	0.525982	7:+96198962	MsaT040058.1:CDS
AGGTGGTGGTTATGGTTCAA+AGG	0.527876	7:+96198979	MsaT040058.1:CDS
TTAGGAATGTTGAAACTGAA+AGG	0.528480	7:+96198866	MsaT040058.1:CDS
ATTTAGTAGTAACAAAGAAA+GGG	0.534556	7:+96199243	MsaT040058.1:CDS
GGTGGTGGTTATGGTTCAAA+GGG	0.537283	7:+96198980	MsaT040058.1:CDS
TTGCATTCATCAAATGGGGT+AGG	0.539537	7:+96198839	MsaT040058.1:CDS
GTTTCATCTGCTCCAAAACA+TGG	0.550664	7:-96198275	None:intergenic
ATGGGAGGATGATTCTGAAG+AGG	0.551198	7:+96198937	MsaT040058.1:CDS
CTGAAAGGTAGAAATGGAGG+AGG	0.556127	7:+96198881	MsaT040058.1:CDS
TATTACATTGGTGATGAAGC+TGG	0.558817	7:+96198386	MsaT040058.1:CDS
AATGGAAATCAGTTTCCAAA+GGG	0.568552	7:+96198468	MsaT040058.1:CDS
TGTGGATGATGATGTTGCAG+TGG	0.570238	7:-96198779	None:intergenic
AACTGTTGCATCACTTGTGA+TGG	0.574352	7:-96199064	None:intergenic
AGATGGAGTGAAGAGTTGTT+GGG	0.577842	7:+96199114	MsaT040058.1:CDS
GAAGAAGAAGAATCAGGAGA+AGG	0.578759	7:+96198959	MsaT040058.1:CDS
CCTTGTTTGATTGATTGATG+AGG	0.589884	7:-96198179	None:intergenic
GTGATGAGTGTGTTGCAAGA+TGG	0.590136	7:+96199097	MsaT040058.1:CDS
AAAGCAATGGATGAAGAAGA+GGG	0.598249	7:+96199141	MsaT040058.1:CDS
CAGTGGTTGAGTCTCAGTTG+AGG	0.599148	7:-96198762	None:intergenic
AAACTGAAAGGTAGAAATGG+AGG	0.600866	7:+96198878	MsaT040058.1:CDS
CCTCATCAATCAATCAAACA+AGG	0.605701	7:+96198179	MsaT040058.1:CDS
AATGAAATGGACAGATACAA+TGG	0.606746	7:+96198340	MsaT040058.1:CDS
TTTGGAGCAGATGAAACCTC+TGG	0.607202	7:+96198281	MsaT040058.1:CDS
AAATGGAAATCAGTTTCCAA+AGG	0.612879	7:+96198467	MsaT040058.1:CDS
AACTTGTCTTCACATTGTTG+AGG	0.613435	7:-96198518	None:intergenic
ATGTTTGCATTCATCAAATG+GGG	0.639039	7:+96198835	MsaT040058.1:CDS
TGTGCTTATCATAACAGTTG+TGG	0.669194	7:+96198710	MsaT040058.1:CDS
AGACGAAGACGATGAATGGG+AGG	0.672078	7:+96198922	MsaT040058.1:CDS
GGAGCAGATGAAACCTCTGG+TGG	0.717638	7:+96198284	MsaT040058.1:CDS
ATGGTTCATCTTCATCACTG+AGG	0.725820	7:-96198256	None:intergenic
GCAATGGATGAAGAAGAGGG+TGG	0.776790	7:+96199144	MsaT040058.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	96198161	96199399	96198161	ID=MsaG040058
Chr7	mRNA	96198161	96199399	96198161	ID=MsaT040058.1;Parent=MsaG040058
Chr7	exon	96198161	96199399	96198161	ID=MsaT040058.1.exon1;Parent=MsaT040058.1
Chr7	CDS	96198161	96199399	96198161	ID=cds.MsaT040058.1;Parent=MsaT040058.1

Gene Sequence

>MsaT040058.1

ATGGTTTCCTATGATCAACCTCATCAATCAATCAAACAAGGCTACCCTTATTCATCCAAAACCAACAACAACAAACCACAACAAATCAACATCAACCTCAGTGATGAAGATGAACCATGTTTTGGAGCAGATGAAACCTCTGGTGGTGACCCAAAAAGAAAAGGATCACCATGGCATAGAATGAAATGGACAGATACAATGGTAAGACTCTTAATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTACTTCAGAATTAAGTGCTGATAAAAAGAAAGCTAATGGTTTGTTACAAAAGAAAGGGAAATGGAAATCAGTTTCCAAAGGGATGATGGAAAAAGGGTACTATGTTTCACCTCAACAATGTGAAGACAAGTTCAATGATTTGAACAAAAGGTATAAAAGAGTTAATGATATTCTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAAAATCAAACTTTGTTGGATACTATGGATTTGTCCGCAAAGTTGAAAGAAGAAGCTAGAAAACTTTTGAATTCTAAGCATCTTTTCTTGCGTGAAATGTGTGCTTATCATAACAGTTGTGGCCATGGAAACAACAATTTGCAACAACAGTCCTCAACTGAGACTCAACCACTGCAACATCATCATCCACAACAACAGCAACAACAGCAGCAGCAGCAGCAACAATGTTTGCATTCATCAAATGGGGTAGGGAGTTTAGGAATGTTGAAACTGAAAGGTAGAAATGGAGGAGGAGAAGATGAAGAGGATGAAGACGAAGACGATGAATGGGAGGATGATTCTGAAGAGGAAGAAGAAGAATCAGGAGAAGGTGGTGGTTATGGTTCAAAGGGTCATGAAGAAGATGAAAATATTGATCACTTAAGGAAAAAATCAAGAAAAGTTTCATCATTGCCATCACAAGTGATGCAACAGTTGAGTAGTGAAGTGATGAGTGTGTTGCAAGATGGAGTGAAGAGTTGTTGGGAGAAAAAGCAATGGATGAAGAAGAGGGTGGTGCAATTAGGAGAAGAACAGGTAAACTATCATATGGAAGCATTTGAGATTGAAAAACAAAGGTTGAAATGGGTGAAATTTAGTAGTAACAAAGAAAGGGAAATGGAGAGACAAAAACTTGAAAATGAAAGGAAGAGTTTGGAGATTGATAGAATGGTTTTGTTGCTACGTCAAAAAGAGCTTGAATTGCAAAACACTCAGCAGCTGCAACAGCAACAGCATTCTTCTACTTGA

Protein sequence

>MsaT040058.1

MVSYDQPHQSIKQGYPYSSKTNNNKPQQININLSDEDEPCFGADETSGGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGTSELSADKKKANGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDTMDLSAKLKEEARKLLNSKHLFLREMCAYHNSCGHGNNNLQQQSSTETQPLQHHHPQQQQQQQQQQQQCLHSSNGVGSLGMLKLKGRNGGGEDEEDEDEDDEWEDDSEEEEEESGEGGGYGSKGHEEDENIDHLRKKSRKVSSLPSQVMQQLSSEVMSVLQDGVKSCWEKKQWMKKRVVQLGEEQVNYHMEAFEIEKQRLKWVKFSSNKEREMERQKLENERKSLEIDRMVLLLRQKELELQNTQQLQQQQHSST*