Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040064 | RHN48623.1 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 5.41e-129 | 377 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040064 | sp|Q6V9I6|HDT1_SOLCH | 42.403 | 283 | 135 | 8 | 1 | 271 | 1 | 267 | 2.64e-48 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040064 | tr|A0A396H772|A0A396H772_MEDTR | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 2.58e-129 | 377 |
Gene ID | Type | Classification |
---|---|---|
MsaG040064 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG040063 | MsaG040064 | 0.901397 | 6.467790e-78 | 3.591941e-74 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040064 | MtrunA17_Chr7g0265761 | 78.261 | 299 | 28 | 6 | 1 | 272 | 1 | 289 | 4.98e-133 | 377 |
MsaG040064 | MtrunA17_Chr2g0320884 | 40.864 | 301 | 143 | 8 | 1 | 272 | 35 | 329 | 2.36e-42 | 147 |
MsaG040064 | MtrunA17_Chr4g0027181 | 38.075 | 239 | 134 | 7 | 1 | 230 | 5 | 238 | 6.69e-28 | 108 |
MsaG040064 | MtrunA17_Chr4g0027191 | 50.000 | 96 | 42 | 2 | 2 | 93 | 6 | 99 | 1.03e-22 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040064 | AT5G03740.1 | 40.273 | 293 | 152 | 7 | 1 | 271 | 1 | 292 | 9.33e-48 | 160 |
MsaG040064 | AT3G44750.2 | 36.996 | 273 | 137 | 6 | 1 | 271 | 1 | 240 | 7.49e-39 | 136 |
MsaG040064 | AT3G44750.1 | 35.531 | 273 | 144 | 6 | 1 | 271 | 1 | 243 | 1.28e-36 | 130 |
MsaG040064 | AT5G22650.2 | 34.722 | 288 | 132 | 9 | 1 | 247 | 1 | 273 | 4.36e-26 | 104 |
MsaG040064 | AT5G22650.1 | 34.602 | 289 | 132 | 9 | 1 | 247 | 1 | 274 | 5.73e-26 | 104 |
MsaG040064 | AT2G27840.4 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 8.79e-21 | 86.7 |
MsaG040064 | AT2G27840.3 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 2.12e-20 | 87.0 |
MsaG040064 | AT2G27840.1 | 47.368 | 95 | 46 | 3 | 1 | 93 | 1 | 93 | 3.39e-20 | 84.7 |
MsaG040064 | AT2G27840.2 | 46.575 | 73 | 35 | 3 | 23 | 93 | 1 | 71 | 5.43e-11 | 60.8 |
Find 65 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTGCAGTCATGGAGTTT+TGG | 0.184723 | 7:+96252636 | None:intergenic |
CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7:-96254364 | None:intergenic |
CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7:+96254359 | MsaT040064.1:CDS |
CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7:+96254196 | MsaT040064.1:intron |
GGTGATCACAAGCTTCAAAT+TGG | 0.296127 | 7:+96254272 | MsaT040064.1:CDS |
AACACCTGTACTTGTGAAAA+AGG | 0.297237 | 7:+96255921 | MsaT040064.1:CDS |
TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7:-96256564 | None:intergenic |
TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7:+96254197 | MsaT040064.1:intron |
TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7:+96256732 | MsaT040064.1:CDS |
TATGGGAGCGTCTTCCTTGC+TGG | 0.325658 | 7:+96254377 | MsaT040064.1:CDS |
CAACTCCAATCACCTGTTAC+AGG | 0.338113 | 7:-96256613 | None:intergenic |
CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7:-96256755 | None:intergenic |
GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7:+96254218 | MsaT040064.1:CDS |
AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7:+96254351 | MsaT040064.1:CDS |
TGATGCATTTACACCGGGTT+TGG | 0.381330 | 7:-96254801 | None:intergenic |
GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7:-96256525 | None:intergenic |
TAGTCTCCAGTTACCTTCTT+CGG | 0.386819 | 7:-96255801 | None:intergenic |
GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7:-96254363 | None:intergenic |
ACAGCTGCAATCCCTGTAAC+AGG | 0.418416 | 7:+96256601 | MsaT040064.1:CDS |
AAGAACTAACCAGTCTTCTC+TGG | 0.427252 | 7:-96255958 | None:intergenic |
TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7:+96256718 | MsaT040064.1:CDS |
TAACAAGCAGCCAGAGAAGC+AGG | 0.434559 | 7:+96256554 | MsaT040064.1:CDS |
CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7:-96256524 | None:intergenic |
GCATTTACACCGGGTTTGGC+AGG | 0.449487 | 7:-96254797 | None:intergenic |
CACAAGTACAGGTGTTTCCT+TGG | 0.449840 | 7:-96255914 | None:intergenic |
AACTTCACATACAGGGATAC+CGG | 0.456270 | 7:-96254248 | None:intergenic |
TTACCAGCCTGCTTAGGGTA+AGG | 0.466162 | 7:-96256519 | None:intergenic |
GAAGATATTATACTTGCTAA+TGG | 0.476177 | 7:+96254683 | MsaT040064.1:CDS |
GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7:+96254219 | MsaT040064.1:CDS |
TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7:+96254360 | MsaT040064.1:CDS |
GATCACCAAACTTCACATAC+AGG | 0.505258 | 7:-96254256 | None:intergenic |
CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7:-96256582 | None:intergenic |
CCGATGAAATGTGGATAAGC+TGG | 0.506704 | 7:-96254089 | None:intergenic |
GTATCCCTGTATGTGAAGTT+TGG | 0.511130 | 7:+96254251 | MsaT040064.1:CDS |
TAGTGTCCCTTACCCTAAGC+AGG | 0.513510 | 7:+96256512 | MsaT040064.1:CDS |
GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7:-96256734 | None:intergenic |
GATTCATCTGATGCTAGTAC+TGG | 0.522501 | 7:+96254869 | MsaT040064.1:CDS |
TTTGTTACTCCAGAGAAGAC+TGG | 0.525269 | 7:+96255949 | MsaT040064.1:CDS |
GTCCCTTACCCTAAGCAGGC+TGG | 0.535334 | 7:+96256516 | MsaT040064.1:CDS |
AATCAGAAGGATGCTAGTAC+TGG | 0.537632 | 7:+96254836 | MsaT040064.1:CDS |
TACCAGCCTGCTTAGGGTAA+GGG | 0.548023 | 7:-96256518 | None:intergenic |
AGCTAACAAAACCCTTCACT+TGG | 0.555690 | 7:-96256767 | None:intergenic |
CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7:+96256755 | MsaT040064.1:CDS |
GTCGTTTAGCCCATGGCGAA+TGG | 0.558159 | 7:+96255723 | MsaT040064.1:intron |
TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7:+96254661 | MsaT040064.1:intron |
CTGAAGGGAGCAACAAGAGG+AGG | 0.570018 | 7:+96255878 | MsaT040064.1:CDS |
CCAGCTTATCCACATTTCAT+CGG | 0.582062 | 7:+96254089 | MsaT040064.1:CDS |
ATCTGATGCTAGTGAAGATG+AGG | 0.588334 | 7:+96254907 | MsaT040064.1:CDS |
GTAGGGAAACCTGCCAAACC+CGG | 0.592566 | 7:+96254788 | MsaT040064.1:intron |
TGACAAGGAGACTCCGAAGA+AGG | 0.592738 | 7:+96255788 | MsaT040064.1:CDS |
CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7:+96256573 | MsaT040064.1:CDS |
AACTCCAATCACCTGTTACA+GGG | 0.611246 | 7:-96256612 | None:intergenic |
GAGGGATGCTGAATCTTCCA+AGG | 0.612820 | 7:+96255897 | MsaT040064.1:CDS |
TGAAGGGAGCAACAAGAGGA+GGG | 0.614862 | 7:+96255879 | MsaT040064.1:CDS |
AGACTGAAGGGAGCAACAAG+AGG | 0.615166 | 7:+96255875 | MsaT040064.1:intron |
AAGCATATACCGATGAAATG+TGG | 0.617686 | 7:-96254098 | None:intergenic |
ACTTCACATACAGGGATACC+GGG | 0.620641 | 7:-96254247 | None:intergenic |
TTAGGTGTCGAGGTAAAACA+TGG | 0.629801 | 7:+96254036 | MsaT040064.1:intron |
AAAACATGGTGAACCACACA+AGG | 0.630125 | 7:+96254050 | MsaT040064.1:CDS |
TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7:+96254199 | MsaT040064.1:intron |
TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7:+96254198 | MsaT040064.1:intron |
ATCACCAAACTTCACATACA+GGG | 0.632725 | 7:-96254255 | None:intergenic |
CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7:+96254229 | MsaT040064.1:CDS |
AAGCGATGAAGATTCTGACA+AGG | 0.637276 | 7:+96255773 | MsaT040064.1:CDS |
ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7:-96254317 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 96252647 | 96256774 | 96252647 | ID=MsaG040064 |
Chr7 | mRNA | 96252647 | 96256774 | 96252647 | ID=MsaT040064.1;Parent=MsaG040064 |
Chr7 | exon | 96252647 | 96252659 | 96252647 | ID=MsaT040064.1.exon1;Parent=MsaT040064.1 |
Chr7 | CDS | 96252647 | 96252659 | 96252647 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96254040 | 96254110 | 96254040 | ID=MsaT040064.1.exon2;Parent=MsaT040064.1 |
Chr7 | CDS | 96254040 | 96254110 | 96254040 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96254209 | 96254413 | 96254209 | ID=MsaT040064.1.exon3;Parent=MsaT040064.1 |
Chr7 | CDS | 96254209 | 96254413 | 96254209 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96254666 | 96254704 | 96254666 | ID=MsaT040064.1.exon4;Parent=MsaT040064.1 |
Chr7 | CDS | 96254666 | 96254704 | 96254666 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96254792 | 96254928 | 96254792 | ID=MsaT040064.1.exon5;Parent=MsaT040064.1 |
Chr7 | CDS | 96254792 | 96254928 | 96254792 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96255732 | 96255809 | 96255732 | ID=MsaT040064.1.exon6;Parent=MsaT040064.1 |
Chr7 | CDS | 96255732 | 96255809 | 96255732 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96255877 | 96255970 | 96255877 | ID=MsaT040064.1.exon7;Parent=MsaT040064.1 |
Chr7 | CDS | 96255877 | 96255970 | 96255877 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96256502 | 96256622 | 96256502 | ID=MsaT040064.1.exon8;Parent=MsaT040064.1 |
Chr7 | CDS | 96256502 | 96256622 | 96256502 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Chr7 | exon | 96256714 | 96256774 | 96256714 | ID=MsaT040064.1.exon9;Parent=MsaT040064.1 |
Chr7 | CDS | 96256714 | 96256774 | 96256714 | ID=cds.MsaT040064.1;Parent=MsaT040064.1 |
Gene Sequence |
Protein sequence |