AlfalfaGEDB | MsaG040079

M. sativa ssp. caerulea / MsaG040079

KEGG: K14400 K14510
GO: GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF04818.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040079	XP_013450095.1	97.276	1028	25	2	1	1025	1	1028	0.0	2048

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040079	sp\|Q0WPF2\|PCFS4_ARATH	37.500	400	185	13	21	399	9	364	6.23e-56	212
MsaG040079	sp\|Q0WPF2\|PCFS4_ARATH	38.012	171	90	5	849	1010	625	788	6.94e-31	134

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040079	tr\|A0A072U4Q6\|A0A072U4Q6_MEDTR	97.276	1028	25	2	1	1025	1	1028	0.0	2048

TFs/TRs:

Gene ID	Type	Classification
MsaG040079	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003090	MsaG040079	0.827103	3.356347e-54	8.950469e-52
MsaG003269	MsaG040079	0.816783	8.041899e-52	1.626719e-49
MsaG004115	MsaG040079	0.807019	1.052591e-49	1.673273e-47
MsaG004422	MsaG040079	0.812220	8.127651e-51	1.465449e-48
MsaG005875	MsaG040079	0.811375	1.239259e-50	2.188546e-48
MsaG006757	MsaG040079	0.805816	1.882166e-49	2.908235e-47
MsaG007222	MsaG040079	0.847906	1.625721e-59	8.207242e-57
MsaG007334	MsaG040079	0.804983	2.808107e-49	4.255591e-47
MsaG009071	MsaG040079	0.824235	1.594773e-53	3.928731e-51
MsaG010243	MsaG040079	0.817138	6.698650e-52	1.367512e-49
MsaG010245	MsaG040079	0.819860	1.628467e-52	3.568201e-50
MsaG012084	MsaG040079	0.858151	1.958000e-62	1.419848e-59
MsaG012182	MsaG040079	0.821351	7.430297e-53	1.693658e-50
MsaG013333	MsaG040079	0.826259	5.326449e-54	1.387397e-51
MsaG014193	MsaG040079	0.828335	1.703707e-54	4.702988e-52
MsaG020162	MsaG040079	0.820320	1.279567e-52	2.838354e-50
MsaG020713	MsaG040079	0.809007	3.990916e-50	6.654167e-48
MsaG040079	MsaG042512	0.830783	4.352899e-55	1.288309e-52
MsaG040079	MsaG046652	0.803533	5.609118e-49	8.219573e-47
MsaG040079	MsaG046653	0.812279	7.892251e-51	1.425093e-48
MsaG040079	MsaG002256	0.855350	1.295205e-61	8.473744e-59
MsaG040079	MsaG002244	0.811396	1.225940e-50	2.166206e-48
MsaG040079	MsaG003262	0.820939	9.236242e-53	2.082549e-50
MsaG040079	MsaG004323	0.816766	8.110844e-52	1.639985e-49
MsaG040079	MsaG031242	0.804846	2.999035e-49	4.530553e-47
MsaG040079	MsaG035307	0.805795	1.901365e-49	2.936449e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040079	MtrunA17_Chr7g0265781	97.276	1028	25	2	1	1025	1	1028	0.0	2048
MsaG040079	MtrunA17_Chr1g0179281	54.805	1051	417	22	3	1025	1	1021	0.0	1018
MsaG040079	MtrunA17_Chr6g0452881	37.534	365	175	10	78	402	37	388	8.68e-58	214
MsaG040079	MtrunA17_Chr6g0452881	36.207	174	105	4	846	1015	645	816	2.20e-30	129
MsaG040079	MtrunA17_Chr4g0037071	33.908	174	109	4	846	1015	15	186	2.33e-26	108
MsaG040079	MtrunA17_Chr6g0452891	34.118	170	79	7	852	1012	72	217	3.95e-22	95.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040079	AT2G36480.2	50.000	458	187	12	3	428	1	448	9.46e-120	391
MsaG040079	AT2G36480.2	40.574	244	134	4	773	1016	716	948	7.89e-47	182
MsaG040079	AT2G36480.1	50.000	458	187	12	3	428	1	448	9.46e-120	391
MsaG040079	AT2G36480.1	40.574	244	134	4	773	1016	716	948	7.89e-47	182
MsaG040079	AT4G04885.1	37.500	400	185	13	21	399	9	364	6.33e-57	212
MsaG040079	AT4G04885.1	38.012	171	90	5	849	1010	625	788	7.06e-32	134
MsaG040079	AT1G66500.1	32.558	172	96	6	849	1011	227	387	4.63e-22	100
MsaG040079	AT5G43620.1	32.386	176	92	6	849	1011	220	381	9.92e-22	99.8

Find 270 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGTTGCCTTTCTAAATATT+TGG	0.133248	7:-96410675	None:intergenic
ACTTCTCGTAATTGATTTAT+TGG	0.142148	7:-96413572	None:intergenic
TTGCTGCTGTCCCGTAATTT+TGG	0.160595	7:-96413104	None:intergenic
GACAGTATTGTTAAGAATAT+TGG	0.166316	7:+96410064	MsaT040079.1:CDS
AGCTGCTGTTGCTGAGGTTT+TGG	0.194493	7:-96413409	None:intergenic
TGGATTCAAGGTATTCTTAT+TGG	0.211269	7:-96413830	None:intergenic
CCCTCCTTCGATGCGTAATT+TGG	0.215915	7:+96413213	MsaT040079.1:CDS
CCAGCCTTCCCTTGTAGTTT+TGG	0.217102	7:-96413730	None:intergenic
ACCTGGCTTCATATTCAATT+TGG	0.235053	7:-96412972	None:intergenic
ACATGTAATCGAAGAATTAT+TGG	0.248282	7:+96414155	MsaT040079.1:CDS
TTCTAGTGTTTCAAATAGTT+TGG	0.249454	7:+96411653	MsaT040079.1:CDS
GAGCTTAAAAGATTTGAAAT+TGG	0.266321	7:-96413850	None:intergenic
TCTTAAAACATCTCAACATT+TGG	0.272228	7:+96413258	MsaT040079.1:CDS
TTATTAACCTTTGTTCCAAT+TGG	0.272469	7:-96412863	None:intergenic
CCCGACCACATTAATTTCTT+CGG	0.274359	7:+96413657	MsaT040079.1:CDS
CTACTTTCCATCTCGCTATC+TGG	0.283979	7:-96414543	None:intergenic
AGTAACTGTCCATCTCAAAT+AGG	0.286697	7:+96413604	MsaT040079.1:CDS
CGTTGCCTTTCTAAATATTT+GGG	0.287620	7:-96410674	None:intergenic
CCGACCACATTAATTTCTTC+GGG	0.290620	7:+96413658	MsaT040079.1:CDS
TGCCATTCGTTCCAATGTTC+AGG	0.291207	7:+96413318	MsaT040079.1:CDS
AGCACCGAAGTCTGTGAATT+TGG	0.302197	7:+96411782	MsaT040079.1:CDS
ATAGTCAAATTAGTAATTAT+CGG	0.306134	7:-96408976	None:intergenic
ACAGTATTGTTAAGAATATT+GGG	0.313571	7:+96410065	MsaT040079.1:CDS
GGAGGGTTGCGTATTGTTAC+TGG	0.318530	7:-96413196	None:intergenic
GAGACTGAGAATCACTTCTA+AGG	0.328918	7:-96410622	None:intergenic
TTCCAATTGGGTGTGTGATT+TGG	0.329546	7:-96412850	None:intergenic
ATTGCGGTGATTGTGGTATT+AGG	0.330585	7:+96414193	MsaT040079.1:CDS
CTTCTCGTAATTGATTTATT+GGG	0.331979	7:-96413571	None:intergenic
AATAGGAATGTCCAAAATTA+CGG	0.342563	7:+96413093	MsaT040079.1:CDS
TATTAACCTTTGTTCCAATT+GGG	0.351939	7:-96412862	None:intergenic
TAAAGGAGTATTTGATGATA+TGG	0.354621	7:+96411366	MsaT040079.1:CDS
GATGGCCGATGAAGACAATT+TGG	0.356986	7:+96411944	MsaT040079.1:CDS
ACCATTTCTTTGCCCGGATA+AGG	0.361597	7:-96411727	None:intergenic
CTTGATGCGGCGGTGGTTGA+GGG	0.366523	7:-96408900	None:intergenic
GTTTCAAATAGTTTGGGTTC+AGG	0.366649	7:+96411660	MsaT040079.1:CDS
AAGATTTGAAATTGGATTCA+AGG	0.366649	7:-96413842	None:intergenic
ATATTTGTTTCTGCTCCTAA+TGG	0.366883	7:+96413004	MsaT040079.1:CDS
GATAAAGCGAAGGCAGCTTT+TGG	0.368771	7:-96410036	None:intergenic
GAATGCTTGGGTAAGCCATT+AGG	0.372033	7:-96413019	None:intergenic
ACTAATTTGACTATAATTGC+TGG	0.373637	7:+96408985	MsaT040079.1:CDS
GGTGTTGCAGAGACCTTATC+CGG	0.374381	7:+96411714	MsaT040079.1:CDS
TGAGGAAACGTTCGTGAAGT+TGG	0.376740	7:-96408775	None:intergenic
AGCCGAAGAATTTGAATGCT+TGG	0.380657	7:-96413032	None:intergenic
CTTAAAACATCTCAACATTT+GGG	0.380724	7:+96413259	MsaT040079.1:CDS
ATTGGAACAAAGGTTAATAA+AGG	0.381415	7:+96412866	MsaT040079.1:CDS
GGGTGCTGCACGTCCATGGC+TGG	0.382360	7:+96411441	MsaT040079.1:CDS
TCTTGATGCGGCGGTGGTTG+AGG	0.387175	7:-96408901	None:intergenic
TCTAGTGTTTCAAATAGTTT+GGG	0.389260	7:+96411654	MsaT040079.1:CDS
AGCATCATCTGCCTCAATTC+TGG	0.390784	7:-96414034	None:intergenic
AGCTGATGCACCGCGATTGT+TGG	0.393455	7:-96413791	None:intergenic
ACCCAAGCATTCAAATTCTT+CGG	0.397635	7:+96413030	MsaT040079.1:CDS
TGACAGCAATGCTTTCAGTT+TGG	0.399143	7:-96413954	None:intergenic
AAGAAACAACTACCATCATC+TGG	0.401863	7:+96412902	MsaT040079.1:CDS
TCTGCGGCGAAATCGATTGC+TGG	0.405177	7:+96409018	MsaT040079.1:CDS
GTCACTTTGGCTTTGACTAA+AGG	0.406869	7:-96413490	None:intergenic
GAGAGGCCAGATCGAGCTTT+GGG	0.416284	7:+96411421	MsaT040079.1:CDS
TCTATGCCGCATACAACAAT+AGG	0.416550	7:+96413076	MsaT040079.1:CDS
AAAACCTCAGCAACAGCAGC+TGG	0.418357	7:+96413411	MsaT040079.1:CDS
ACTGGGACAGCTGAAGAAAC+AGG	0.419209	7:-96414003	None:intergenic
AGAGAGGCCAGATCGAGCTT+TGG	0.423688	7:+96411420	MsaT040079.1:CDS
ACAAAAGAAAGAGAACAAAA+TGG	0.424354	7:+96414261	MsaT040079.1:CDS
TAAATCAATTACGAGAAGTC+TGG	0.426887	7:+96413576	MsaT040079.1:CDS
CAATTGGGTGTGTGATTTGG+AGG	0.427496	7:-96412847	None:intergenic
TAAAACAGACGGGAGTCAAT+TGG	0.428390	7:+96414398	MsaT040079.1:CDS
CCGAAGAAATTAATGTGGTC+GGG	0.430521	7:-96413657	None:intergenic
ACCTTATCCGGGCAAAGAAA+TGG	0.430710	7:+96411726	MsaT040079.1:CDS
TCTCGCTATCTGGATTGTTC+AGG	0.430835	7:-96414533	None:intergenic
CTCCAAATCACACACCCAAT+TGG	0.432800	7:+96412848	MsaT040079.1:CDS
TGCATTTCTCGAATGACATC+AGG	0.434562	7:-96414129	None:intergenic
GCCGAAGAATTTGAATGCTT+GGG	0.436198	7:-96413031	None:intergenic
TTCATATTCAATTTGGCACT+TGG	0.438918	7:-96412965	None:intergenic
GGGTTTAAGCCTACTCGGTC+AGG	0.439200	7:+96413625	MsaT040079.1:CDS
GTAACTGTCCATCTCAAATA+GGG	0.440250	7:+96413605	MsaT040079.1:CDS
CGATTGTTGGAGGAAGTAGA+TGG	0.441441	7:-96413778	None:intergenic
ACATCAGATGACTGGATTGC+TGG	0.443441	7:+96414315	MsaT040079.1:CDS
GGTTCAGGTGTTGGAAGAAC+CGG	0.446940	7:+96411675	MsaT040079.1:CDS
AAGAGCATCGGCGGAGCCTA+TGG	0.447109	7:+96411615	MsaT040079.1:CDS
GCAGTGCAATGTCAAAGAAC+TGG	0.449666	7:+96411823	MsaT040079.1:CDS
CAACGACAACAACCTACCTC+TGG	0.451366	7:+96408796	MsaT040079.1:CDS
CACGTCCATGGCTGGATCCT+AGG	0.451919	7:+96411449	MsaT040079.1:CDS
CTTTGGGTGCTGCACGTCCA+TGG	0.452816	7:+96411437	MsaT040079.1:CDS
GCAGCACCCAAAGCTCGATC+TGG	0.453817	7:-96411427	None:intergenic
AGAGTAGGTGAATAATCATT+TGG	0.453893	7:-96413706	None:intergenic
GGGTCTCCCGCCGCGTCACT+AGG	0.453960	7:+96413679	MsaT040079.1:CDS
CTCAAGTTGTTAGAGACATT+AGG	0.457050	7:-96411909	None:intergenic
AATCATTTCACCTACCCTGC+TGG	0.462666	7:-96410708	None:intergenic
TCGATTGCTGGTGCTGTTTG+TGG	0.463089	7:+96409030	MsaT040079.1:CDS
AACGTCTTCAGCAGTCCAGC+AGG	0.469296	7:+96410693	MsaT040079.1:CDS
ACCAGCTCTTGATGCGGCGG+TGG	0.470882	7:-96408907	None:intergenic
AGAGGAGTTCATGTGGGATG+AGG	0.471007	7:+96411860	MsaT040079.1:CDS
AACTTCAATCCCGCGGTCAA+TGG	0.473692	7:+96410578	MsaT040079.1:CDS
ACAGAAATTAGAAATCTCAT+TGG	0.476065	7:+96414093	MsaT040079.1:CDS
CTCCTGTCCATTCAAGTATG+AGG	0.480383	7:+96410489	MsaT040079.1:CDS
ATCACAAGAGAAGGATATGC+GGG	0.481020	7:+96413357	MsaT040079.1:CDS
CCAAAACTACAAGGGAAGGC+TGG	0.482381	7:+96413730	MsaT040079.1:CDS
AATAGTTTGGGTTCAGGTGT+TGG	0.482447	7:+96411666	MsaT040079.1:CDS
CCTACTCTGCCAAAACTACA+AGG	0.485299	7:+96413721	MsaT040079.1:CDS
TTGTCTTCATCGGCCATCCA+TGG	0.488246	7:-96411939	None:intergenic
CTACGATGTTGTCGTCTGGT+AGG	0.491431	7:+96408824	MsaT040079.1:CDS
TGAATCCCAAATATTTAGAA+AGG	0.497212	7:+96410669	MsaT040079.1:CDS
GAAACAGGAACTGAAGCAAC+TGG	0.498254	7:-96413988	None:intergenic
AAACGTTCGTGAAGTTGGAT+TGG	0.499805	7:-96408770	None:intergenic
AAGGGACGAGTGGATGTTCA+AGG	0.500865	7:+96414500	MsaT040079.1:CDS
AGATGACTGGATTGCTGGCA+AGG	0.501201	7:+96414320	MsaT040079.1:CDS
AAAGATGCCTCATACTTGAA+TGG	0.503245	7:-96410496	None:intergenic
ACAGCAGCTGGGTTCTTCAC+AGG	0.503314	7:+96413423	MsaT040079.1:CDS
ATAGGAATGTCCAAAATTAC+GGG	0.506569	7:+96413094	MsaT040079.1:CDS
CGTATTGTTACTGGCACTGT+TGG	0.506761	7:-96413187	None:intergenic
CGGGAGTCAATTGGACACTA+TGG	0.507853	7:+96414407	MsaT040079.1:CDS
GCTGAAACCATTTCTTTGCC+CGG	0.508129	7:-96411733	None:intergenic
AAAGAAGTTGCTAAAGATAA+CGG	0.508160	7:-96413382	None:intergenic
AACTGAAGCAACTGGTAAAG+AGG	0.508176	7:-96413980	None:intergenic
CTAAATATTTGGGATTCACA+TGG	0.508383	7:-96410664	None:intergenic
AATCGAGGTTTCTTCGCACC+TGG	0.512088	7:-96408724	None:intergenic
GCCAAATTGAATATGAAGCC+AGG	0.515735	7:+96412971	MsaT040079.1:CDS
TCATATTCAATTTGGCACTT+GGG	0.516765	7:-96412964	None:intergenic
GGCTTAAACCCTATTTGAGA+TGG	0.516828	7:-96413613	None:intergenic
ACCGCCAATGAGCCTACTTC+CGG	0.517406	7:-96411694	None:intergenic
ATCATGGGAGTTGCAGAAGC+AGG	0.518761	7:+96412940	MsaT040079.1:CDS
CAAGTTACCAACCTGAACAT+TGG	0.518895	7:-96413329	None:intergenic
ATTTGAAGATGTATACTGTC+AGG	0.519071	7:+96414476	MsaT040079.1:CDS
AGTAAAATCTTCCAGAATTG+AGG	0.520874	7:+96414023	MsaT040079.1:CDS
GGAGTATTTGATGATATGGC+TGG	0.521125	7:+96411370	MsaT040079.1:CDS
GATCGCATCACCGTCTCACT+TGG	0.525025	7:-96413925	None:intergenic
TGATGCACCGCGATTGTTGG+AGG	0.525881	7:-96413788	None:intergenic
GAAATTAATGTGGTCGGGGA+AGG	0.526098	7:-96413652	None:intergenic
CCACATCATTGCGGTGATTG+TGG	0.527976	7:+96414186	MsaT040079.1:CDS
AGAACCGGAAGTAGGCTCAT+TGG	0.529221	7:+96411690	MsaT040079.1:CDS
CACACAATACACACAAGCAT+TGG	0.529437	7:-96414446	None:intergenic
AACGACAACAACCTACCTCT+GGG	0.529457	7:+96408797	MsaT040079.1:CDS
GCCAAATTACGCATCGAAGG+AGG	0.530494	7:-96413214	None:intergenic
ATTGGAACGAATGGCAGGCA+CGG	0.530926	7:-96413311	None:intergenic
CCCGAAGAAATTAATGTGGT+CGG	0.531341	7:-96413658	None:intergenic
CCACTCTTCACAGATGGAGC+TGG	0.531578	7:-96413541	None:intergenic
GCTTACCAAATTGTCTTCAT+CGG	0.532183	7:-96411949	None:intergenic
ATTCAAGGTATTCTTATTGG+CGG	0.532457	7:-96413827	None:intergenic
ATTTGGATGCACATAGCATA+AGG	0.533715	7:+96411799	MsaT040079.1:CDS
TTATTGGCGGTATTTGAGCT+CGG	0.534346	7:-96413814	None:intergenic
GCGAAAGGTTTGATATCCGC+AGG	0.535645	7:+96413880	MsaT040079.1:CDS
CAAGCATCTAGCATGAATGA+TGG	0.535680	7:-96414577	None:intergenic
GGTATGCAACATCAGATGAC+TGG	0.539121	7:+96414307	MsaT040079.1:CDS
ACCACCGCCGCATCAAGAGC+TGG	0.540585	7:+96408906	MsaT040079.1:CDS
ACAGCAGCAATTTGATTCTG+AGG	0.540664	7:+96413117	MsaT040079.1:CDS
AGAAACAACTACCATCATCT+GGG	0.543785	7:+96412903	MsaT040079.1:CDS
TTAAGCTCGTTAGTTGCGAA+AGG	0.545105	7:+96413865	MsaT040079.1:CDS
TTCACATGGATGCTATGAGA+TGG	0.547527	7:-96410650	None:intergenic
AATAATTCTTCGATTACATG+TGG	0.547916	7:-96414153	None:intergenic
TGTCTTCATCGGCCATCCAT+GGG	0.548954	7:-96411938	None:intergenic
ATTATATCCATCGTCTCCAT+AGG	0.554348	7:-96411631	None:intergenic
TGAACATTGGAACGAATGGC+AGG	0.555403	7:-96413316	None:intergenic
AATAATCAGCATACTCATAG+AGG	0.555522	7:+96411567	MsaT040079.1:CDS
AGATGTATACTGTCAGGAAA+GGG	0.555729	7:+96414482	MsaT040079.1:CDS
GACATTCCTATTGTTGTATG+CGG	0.557470	7:-96413082	None:intergenic
AAGGTGAAGACTGTTCTGAA+GGG	0.558749	7:-96413150	None:intergenic
AACCTGAACATTGGAACGAA+TGG	0.559123	7:-96413320	None:intergenic
AAAGGTGAAGACTGTTCTGA+AGG	0.560794	7:-96413151	None:intergenic
CAGCAGCAATTTGATTCTGA+GGG	0.562116	7:+96413118	MsaT040079.1:CDS
TATGATGATAATAAAACAGA+CGG	0.562220	7:+96414387	MsaT040079.1:CDS
CCAAATTACGCATCGAAGGA+GGG	0.563230	7:-96413213	None:intergenic
ATGATTCCACTCTTCACAGA+TGG	0.563534	7:-96413547	None:intergenic
TTGGAACGAATGGCAGGCAC+GGG	0.563880	7:-96413310	None:intergenic
TGATTGTAGCATCAAGAAGA+TGG	0.565765	7:+96414286	MsaT040079.1:CDS
TGCCTCATACTTGAATGGAC+AGG	0.566930	7:-96410491	None:intergenic
GTTGCTACGATGTTGTCGTC+TGG	0.567550	7:+96408820	MsaT040079.1:CDS
CACACACCCAATTGGAACAA+AGG	0.567583	7:+96412856	MsaT040079.1:CDS
TATTGTTAAGAATATTGGGC+GGG	0.568077	7:+96410069	MsaT040079.1:CDS
CCACAATCACCGCAATGATG+TGG	0.571121	7:-96414186	None:intergenic
CGAAGAAATTAATGTGGTCG+GGG	0.572323	7:-96413656	None:intergenic
ATTCGTTCCAATGTTCAGGT+TGG	0.573224	7:+96413322	MsaT040079.1:CDS
GTCACCAGCTCTTGATGCGG+CGG	0.573740	7:-96408910	None:intergenic
CGAGATGGAAAGTAGAAATG+TGG	0.573826	7:+96414551	MsaT040079.1:CDS
GCATCCAAATTCACAGACTT+CGG	0.574943	7:-96411786	None:intergenic
TTGTCAGATAACTCAATACT+TGG	0.575179	7:+96414597	MsaT040079.1:CDS
TGAGGCAGATGATGCTGCAA+AGG	0.575199	7:+96414041	MsaT040079.1:CDS
AGACTGAGAATCACTTCTAA+GGG	0.576385	7:-96410621	None:intergenic
TCACATGGATGCTATGAGAT+GGG	0.576495	7:-96410649	None:intergenic
CTTGCGAAAATCACAAGAGA+AGG	0.578295	7:+96413348	MsaT040079.1:CDS
CACAATCACCGCAATGATGT+GGG	0.578357	7:-96414185	None:intergenic
AAAGGAGCTTTAGATTTGAG+TGG	0.579334	7:-96413472	None:intergenic
ACCGGAAGTAGGCTCATTGG+CGG	0.579906	7:+96411693	MsaT040079.1:CDS
GAAAGTAGTGATGGTGGCGG+TGG	0.581623	7:+96408871	MsaT040079.1:CDS
AAGCATCTAGCATGAATGAT+GGG	0.581668	7:-96414576	None:intergenic
AAGATGTATACTGTCAGGAA+AGG	0.582076	7:+96414481	MsaT040079.1:CDS
GAACCCAGCTGCTGTTGCTG+AGG	0.583698	7:-96413415	None:intergenic
GAAGGCTGGAAAGAAGCAAA+AGG	0.584037	7:+96413744	MsaT040079.1:CDS
GGAGAACCTAGTGACGCGGC+GGG	0.584551	7:-96413685	None:intergenic
TGGTAGTTGTTTCTTAACAG+TGG	0.585131	7:-96412894	None:intergenic
GAGATGGAAAGTAGAAATGT+GGG	0.585552	7:+96414552	MsaT040079.1:CDS
TGTTTGTGGTAACATTCTTG+AGG	0.586608	7:+96409044	MsaT040079.1:CDS
ATGTGGGATGAGGTGAACCC+TGG	0.587853	7:+96411870	MsaT040079.1:CDS
AGAACAGTTTAATAGACACT+TGG	0.587882	7:+96414227	MsaT040079.1:CDS
GGCGGAGCCTATGGAGACGA+TGG	0.591159	7:+96411624	MsaT040079.1:CDS
GGGACGAGTGGATGTTCAAG+GGG	0.591895	7:+96414502	MsaT040079.1:CDS
GTGTTGGAAGAACCGGAAGT+AGG	0.595103	7:+96411682	MsaT040079.1:CDS
ACAAATATTTCTGAGTGACC+TGG	0.595652	7:-96412989	None:intergenic
CATACATGCATGTTAAGCCT+AGG	0.595796	7:-96411466	None:intergenic
TCAATTATCTGAAGAGTCTG+AGG	0.595989	7:-96410545	None:intergenic
GACTCTTCAGATAATTGAGA+AGG	0.596715	7:+96410550	MsaT040079.1:CDS
CGACCACATTAATTTCTTCG+GGG	0.597538	7:+96413659	MsaT040079.1:CDS
AAATAGGGTTTAAGCCTACT+CGG	0.599873	7:+96413620	MsaT040079.1:CDS
CCAGCTCCATCTGTGAAGAG+TGG	0.601958	7:+96413541	MsaT040079.1:CDS
GAAGCTGAACCATTGACCGC+GGG	0.604224	7:-96410587	None:intergenic
GGTACATTATCAGACAAACC+AGG	0.604517	7:-96411888	None:intergenic
ATTCTGCAATACATACAGAC+AGG	0.606020	7:+96410460	MsaT040079.1:CDS
TTAGATAGATCGAGAGAACC+AGG	0.607166	7:+96408706	MsaT040079.1:CDS
ACAACTTGAGCTCAGACCCA+TGG	0.607186	7:+96411922	MsaT040079.1:CDS
AGGGACGAGTGGATGTTCAA+GGG	0.609571	7:+96414501	MsaT040079.1:CDS
TCTGTTCCTGAAAAGAGCAT+CGG	0.616052	7:+96411603	MsaT040079.1:CDS
ATGATGATAATAAAACAGAC+GGG	0.617056	7:+96414388	MsaT040079.1:CDS
CGGAGGAAGAGGAGTTCATG+TGG	0.617778	7:+96411853	MsaT040079.1:CDS
AAAACATCTCAACATTTGGG+TGG	0.617967	7:+96413262	MsaT040079.1:CDS
TCTGCCAAAACTACAAGGGA+AGG	0.621190	7:+96413726	MsaT040079.1:CDS
AACTACAGTGCCAAGTGAGA+CGG	0.621357	7:+96413915	MsaT040079.1:CDS
AGGTGAAGACTGTTCTGAAG+GGG	0.621418	7:-96413149	None:intergenic
AAACCTCAGCAACAGCAGCT+GGG	0.621875	7:+96413412	MsaT040079.1:CDS
TTTAAGCCTACTCGGTCAGG+TGG	0.622249	7:+96413628	MsaT040079.1:CDS
AGAGCTGGTGACTCAGTACA+AGG	0.624110	7:+96408921	MsaT040079.1:CDS
GACTCTGAAAGTAGTGATGG+TGG	0.625930	7:+96408865	MsaT040079.1:CDS
GTTGGAGACTGTTGTCGCAA+AGG	0.627501	7:-96413169	None:intergenic
GATGCGGCGGTGGTTGAGGG+TGG	0.627658	7:-96408897	None:intergenic
GGGGCATTCATCATTATCAT+GGG	0.628071	7:+96412925	MsaT040079.1:CDS
TGCTGGAGAGAATCTTTCTG+CGG	0.629304	7:+96409002	MsaT040079.1:CDS
AGTTTAATAGACACTTGGAA+TGG	0.631756	7:+96414232	MsaT040079.1:CDS
GTTCCTGAAAAGAGCATCGG+CGG	0.634573	7:+96411606	MsaT040079.1:CDS
GTGTTGCAGAGACCTTATCC+GGG	0.636826	7:+96411715	MsaT040079.1:CDS
CTTGAGCTCAGACCCATGGA+TGG	0.637419	7:+96411926	MsaT040079.1:CDS
ATAATTCTTCGATTACATGT+GGG	0.641758	7:-96414152	None:intergenic
ATTATCTGAAGAGTCTGAGG+AGG	0.642000	7:-96410542	None:intergenic
TCAGCCAAATTACGCATCGA+AGG	0.643348	7:-96413217	None:intergenic
AGAGACTCTGAAAGTAGTGA+TGG	0.643593	7:+96408862	MsaT040079.1:CDS
TGTAGCTCATCGATCAATCG+AGG	0.646360	7:-96408739	None:intergenic
ATTCAAATTCTTCGGCTGCG+AGG	0.650495	7:+96413038	MsaT040079.1:CDS
ATCGTAGCAACCCCAGAGGT+AGG	0.650618	7:-96408808	None:intergenic
TGATTGAGACAAGGCAAGCG+AGG	0.653277	7:-96414064	None:intergenic
GAAGGACCACCTGACCGAGT+AGG	0.653335	7:-96413634	None:intergenic
GAGGTAGGTTGTTGTCGTTG+AGG	0.655687	7:-96408793	None:intergenic
GAAACAACTACCATCATCTG+GGG	0.656842	7:+96412904	MsaT040079.1:CDS
TGTGCTAGTTGATTGAGACA+AGG	0.659929	7:-96414073	None:intergenic
GAACAATCCAGATAGCGAGA+TGG	0.661154	7:+96414536	MsaT040079.1:CDS
ACTGTCAGGAAAGGGACGAG+TGG	0.661605	7:+96414490	MsaT040079.1:CDS
AAACAACTACCATCATCTGG+GGG	0.664219	7:+96412905	MsaT040079.1:CDS
GGAGGAAGAGGAGTTCATGT+GGG	0.666115	7:+96411854	MsaT040079.1:CDS
CTGTCTAAGAGATAAAGCGA+AGG	0.669079	7:-96410046	None:intergenic
AATCACAAGAGAAGGATATG+CGG	0.670294	7:+96413356	MsaT040079.1:CDS
ATGCAAATGAAGACGCAGAG+AGG	0.671037	7:+96411404	MsaT040079.1:CDS
CTACTCTGCCAAAACTACAA+GGG	0.673317	7:+96413722	MsaT040079.1:CDS
AGTTGCTGACTCTGTTCCTG+CGG	0.676828	7:-96413896	None:intergenic
AGCAGCAATTTGATTCTGAG+GGG	0.679911	7:+96413119	MsaT040079.1:CDS
TCTACTTCCTCCAACAATCG+CGG	0.682019	7:+96413781	MsaT040079.1:CDS
CTTTGCTGTCAGACTACCCG+AGG	0.682806	7:+96410105	MsaT040079.1:CDS
ACGTCTTCAGCAGTCCAGCA+GGG	0.683190	7:+96410694	MsaT040079.1:CDS
GTATTGTTAAGAATATTGGG+CGG	0.684810	7:+96410068	MsaT040079.1:CDS
GTACATTATCAGACAAACCA+GGG	0.685272	7:-96411887	None:intergenic
AGAAGCTGAACCATTGACCG+CGG	0.688294	7:-96410588	None:intergenic
TTGATCGATGAGCTACAACA+AGG	0.688797	7:+96408745	MsaT040079.1:CDS
TGGAGAACCTAGTGACGCGG+CGG	0.688959	7:-96413686	None:intergenic
GATGAACTCCCACATCATTG+CGG	0.690002	7:+96414177	MsaT040079.1:CDS
TGAGTCACCAGCTCTTGATG+CGG	0.698871	7:-96408913	None:intergenic
TTAAGCCTAGGATCCAGCCA+TGG	0.699790	7:-96411454	None:intergenic
GGAACTCAACTTCAATCCCG+CGG	0.701859	7:+96410571	MsaT040079.1:CDS
AGACCCCGAAGAAATTAATG+TGG	0.705849	7:-96413662	None:intergenic
AGATGGAAAGTAGAAATGTG+GGG	0.706843	7:+96414553	MsaT040079.1:CDS
GGACGAGTGGATGTTCAAGG+GGG	0.711357	7:+96414503	MsaT040079.1:CDS
CAATGCTTGTGTGTATTGTG+TGG	0.715495	7:+96414447	MsaT040079.1:CDS
TCACAAGAGAAGGATATGCG+GGG	0.724395	7:+96413358	MsaT040079.1:CDS
TCTGAAAGTAGTGATGGTGG+CGG	0.725899	7:+96408868	MsaT040079.1:CDS
ATTTGGAGAACCTAGTGACG+CGG	0.733407	7:-96413689	None:intergenic
ACGACAACAACCTACCTCTG+GGG	0.737955	7:+96408798	MsaT040079.1:CDS
AACAACTACCATCATCTGGG+GGG	0.742353	7:+96412906	MsaT040079.1:CDS
CAACATCGTAGCAACCCCAG+AGG	0.765435	7:-96408812	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	96408679	96414764	96408679	ID=MsaG040079
Chr7	mRNA	96408679	96414764	96408679	ID=MsaT040079.1;Parent=MsaG040079
Chr7	exon	96408679	96409065	96408679	ID=MsaT040079.1.exon1;Parent=MsaT040079.1
Chr7	CDS	96408679	96409065	96408679	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96410025	96410126	96410025	ID=MsaT040079.1.exon2;Parent=MsaT040079.1
Chr7	CDS	96410025	96410126	96410025	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96410458	96410715	96410458	ID=MsaT040079.1.exon3;Parent=MsaT040079.1
Chr7	CDS	96410458	96410715	96410458	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96411364	96411483	96411364	ID=MsaT040079.1.exon4;Parent=MsaT040079.1
Chr7	CDS	96411364	96411483	96411364	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96411567	96411965	96411567	ID=MsaT040079.1.exon5;Parent=MsaT040079.1
Chr7	CDS	96411567	96411965	96411567	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96412833	96414632	96412833	ID=MsaT040079.1.exon6;Parent=MsaT040079.1
Chr7	CDS	96412833	96414632	96412833	ID=cds.MsaT040079.1;Parent=MsaT040079.1
Chr7	exon	96414753	96414764	96414753	ID=MsaT040079.1.exon7;Parent=MsaT040079.1
Chr7	CDS	96414753	96414764	96414753	ID=cds.MsaT040079.1;Parent=MsaT040079.1

Gene Sequence

>MsaT040079.1

ATGAACATGGAAAATTCTCGTAGATCTTTAGATAGATCGAGAGAACCAGGTGCGAAGAAACCTCGATTGATCGATGAGCTACAACAAGGTTCCAATCCAACTTCACGAACGTTTCCTCAACGACAACAACCTACCTCTGGGGTTGCTACGATGTTGTCGTCTGGTAGGTTTCGAATGAATGATAGAGACTCTGAAAGTAGTGATGGTGGCGGTGGTTACCACCCTCAACCACCGCCGCATCAAGAGCTGGTGACTCAGTACAAGGCTGCTCTTGCTGAGCTTACTTTTAACTCGAAACCGATAATTACTAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCGGCGAAATCGATTGCTGGTGCTGTTTGTGGTAACATTCTTGAGGTTCCAAGTGACCAAAAGCTGCCTTCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGTCAGACTACCCGAGGTATTCTGCAATACATACAGACAGGTTGATACTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACTCTTCAGATAATTGAGAAGGAACTCAACTTCAATCCCGCGGTCAATGGTTCAGCTTCTGCATCTGCTACCCTTAGAAGTGATTCTCAGTCTCAACGCCCATCTCATAGCATCCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTTGATGATATGGCTGGAGTTATTTCAAATGCAAATGAAGACGCAGAGAGGCCAGATCGAGCTTTGGGTGCTGCACGTCCATGGCTGGATCCTAGGCTTAACATGCATAATAATCAGCATACTCATAGAGGTGCACTTAATGACTCTGTTCCTGAAAAGAGCATCGGCGGAGCCTATGGAGACGATGGATATAATTCTAGTGTTTCAAATAGTTTGGGTTCAGGTGTTGGAAGAACCGGAAGTAGGCTCATTGGCGGTGTTGCAGAGACCTTATCCGGGCAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAATCATGAAGCACCGAAGTCTGTGAATTTGGATGCACATAGCATAAGGAGCAGTGCAATGTCAAAGAACTGGAAAAATTCGGAGGAAGAGGAGTTCATGTGGGATGAGGTGAACCCTGGTTTGTCTGATAATGTACCTAATGTCTCTAACAACTTGAGCTCAGACCCATGGATGGCCGATGAAGACAATTTGGAAAGTGAAGATCACCTCCAAATCACACACCCAATTGGAACAAAGGTTAATAAAGGAATATCCACTGTTAAGAAACAACTACCATCATCTGGGGGGCATTCATCATTATCATGGGAGTTGCAGAAGCAGGTCCCAAGTGCCAAATTGAATATGAAGCCAGGTCACTCAGAAATATTTGTTTCTGCTCCTAATGGCTTACCCAAGCATTCAAATTCTTCGGCTGCGAGGATAAGAAATCAGTCTTCTATGCCGCATACAACAATAGGAATGTCCAAAATTACGGGACAGCAGCAATTTGATTCTGAGGGGACAGAGTCCCCTTCAGAACAGTCTTCACCTTTGCGACAACAGTCTCCAACAGTGCCAGTAACAATACGCAACCCTCCTTCGATGCGTAATTTGGCTGAGCAAGATTGTCCAACATCTCTTAAAACATCTCAACATTTGGGTGGTCTGCAAAGACAATATATTAGAGATCCCGTGCCTGCCATTCGTTCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAAGAGAAGGATATGCGGGGTCCGTTATCTTTAGCAACTTCTTTTCAGCCAAAACCTCAGCAACAGCAGCTGGGTTCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAATCTAAAGCTCCTTTAGTCAAAGCCAAAGTGACTTCAGAAAAGTCAACTACAAAGTGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATTCCCAATAAATCAATTACGAGAAGTCTGGATGCAAGTAACTGTCCATCTCAAATAGGGTTTAAGCCTACTCGGTCAGGTGGTCCTTCCCCGACCACATTAATTTCTTCGGGGTCTCCCGCCGCGTCACTAGGTTCTCCAAATGATTATTCACCTACTCTGCCAAAACTACAAGGGAAGGCTGGAAAGAAGCAAAAGGATTCTACTCAACCATCTACTTCCTCCAACAATCGCGGTGCATCAGCTCCGAGCTCAAATACCGCCAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGCTCGTTAGTTGCGAAAGGTTTGATATCCGCAGGAACAGAGTCAGCAACTACAGTGCCAAGTGAGACGGTGATGCGATCGAAAGACCAAACTGAAAGCATTGCTGTCAGTTCCTCTTTACCAGTTGCTTCAGTTCCTGTTTCTTCAGCTGTCCCAGTAAAATCTTCCAGAATTGAGGCAGATGATGCTGCAAAGGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTCATTCGAGAAATGCACCCACATGTAATCGAAGAATTATTGGATGAACTCCCACATCATTGCGGTGATTGTGGTATTAGGCTTAAACAACAAGAACAGTTTAATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTGTAGCATCAAGAAGATGGTATGCAACATCAGATGACTGGATTGCTGGCAAGGCAGAATGTCTGTCTGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGATAATAAAACAGACGGGAGTCAATTGGACACTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACGAGTGGATGTTCAAGGGGGCTGTATACCTGAACAATCCAGATAGCGAGATGGAAAGTAGAAATGTGGGGCCCATCATTCATGCTAGATGCTTGTCAGATAACTCAATACTTGGTGTGACTAATACAGAACATGATTGA

Protein sequence

>MsaT040079.1

MNMENSRRSLDRSREPGAKKPRLIDELQQGSNPTSRTFPQRQQPTSGVATMLSSGRFRMNDRDSESSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCGNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDTPVHSSMRHLFGTWRGVFPPQTLQIIEKELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYLERQRLQQSSRTKGVFDDMAGVISNANEDAERPDRALGAARPWLDPRLNMHNNQHTHRGALNDSVPEKSIGGAYGDDGYNSSVSNSLGSGVGRTGSRLIGGVAETLSGQRNGFSLKHSFSNHEAPKSVNLDAHSIRSSAMSKNWKNSEEEEFMWDEVNPGLSDNVPNVSNNLSSDPWMADEDNLESEDHLQITHPIGTKVNKGISTVKKQLPSSGGHSSLSWELQKQVPSAKLNMKPGHSEIFVSAPNGLPKHSNSSAARIRNQSSMPHTTIGMSKITGQQQFDSEGTESPSEQSSPLRQQSPTVPVTIRNPPSMRNLAEQDCPTSLKTSQHLGGLQRQYIRDPVPAIRSNVQVGNLRKSQEKDMRGPLSLATSFQPKPQQQQLGSSQAEVTLKAKQPLKSKAPLVKAKVTSEKSTTKCLPAPSVKSGIIPNKSITRSLDASNCPSQIGFKPTRSGGPSPTTLISSGSPAASLGSPNDYSPTLPKLQGKAGKKQKDSTQPSTSSNNRGASAPSSNTANKNTLNPISNLLSSLVAKGLISAGTESATTVPSETVMRSKDQTESIAVSSSLPVASVPVSSAVPVKSSRIEADDAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKEREQNGLIVASRRWYATSDDWIAGKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPDSEMESRNVGPIIHARCLSDNSILGVTNTEHD*