AlfalfaGEDB | MsaG040084

M. sativa ssp. caerulea / MsaG040084

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040084	XP_039684219.1	93.125	480	25	3	1	477	1	475	0.0	881

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040084	sp\|Q9LZS0\|PTL_ARATH	46.209	422	164	12	1	387	1	394	9.51e-95	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040084	tr\|A0A396H5V1\|A0A396H5V1_MEDTR	93.125	480	25	3	1	477	1	475	0.0	881

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040084	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040084	MtrunA17_Chr7g0265831	93.125	480	25	3	1	477	1	475	0.0	881
MsaG040084	MtrunA17_Chr1g0179191	51.908	524	148	17	17	476	27	510	3.66e-152	443
MsaG040084	MtrunA17_Chr1g0198171	37.931	435	210	16	17	413	10	422	2.28e-79	255
MsaG040084	MtrunA17_Chr1g0201941	37.209	301	134	4	119	365	57	356	4.52e-49	177
MsaG040084	MtrunA17_Chr1g0201941	42.000	100	55	3	110	208	446	543	1.09e-17	85.9
MsaG040084	MtrunA17_Chr1g0201911	35.556	270	143	4	119	367	55	314	2.89e-40	152
MsaG040084	MtrunA17_Chr1g0201911	40.945	127	63	4	108	233	361	476	6.69e-20	92.8
MsaG040084	MtrunA17_Chr6g0463941	63.462	104	32	3	112	213	46	145	4.02e-34	135
MsaG040084	MtrunA17_Chr6g0463941	43.299	97	53	2	115	210	460	555	7.97e-19	89.7
MsaG040084	MtrunA17_Chr1g0190851	26.012	346	205	12	26	366	29	328	4.58e-16	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040084	AT5G03680.1	46.209	422	164	12	1	387	1	394	9.66e-96	301
MsaG040084	AT3G10000.1	39.659	469	224	11	47	477	34	481	1.30e-91	287
MsaG040084	AT3G10000.2	37.953	469	222	12	47	477	34	471	1.15e-81	261
MsaG040084	AT1G76890.2	34.405	311	142	7	112	366	34	338	2.67e-41	155
MsaG040084	AT1G76890.2	40.496	121	70	2	112	231	390	509	1.15e-19	92.4
MsaG040084	AT1G76880.1	54.955	111	44	2	99	209	46	150	2.28e-30	124
MsaG040084	AT1G76880.1	42.000	100	56	2	112	210	401	499	3.90e-17	84.7
MsaG040084	AT1G33240.3	59.596	99	36	2	119	217	62	156	7.37e-30	123
MsaG040084	AT1G33240.3	42.697	89	49	2	119	206	435	522	5.05e-16	81.3
MsaG040084	AT1G33240.1	59.596	99	36	2	119	217	62	156	9.90e-30	123

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Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCCTGATTGTTGT+TGG	0.473343	7:+96455427	None:intergenic
AAAGAGCTTGGATTGAAGCT+AGG	0.477669	7:-96455058	MsaT040084.1:CDS
AAATTGTTGGTAGTTGATCT+TGG	0.391857	7:+96456716	None:intergenic
AAATTTCAACTCACTGGTTT+TGG	0.258916	7:+96454676	None:intergenic
AACATGGCTATCAAAGGAGT+GGG	0.590438	7:-96455622	MsaT040084.1:CDS
AACTACCAACAATTTCCCTA+CGG	0.632466	7:-96456708	MsaT040084.1:CDS
AAGACCAGGGAAGGAAAAGC+AGG	0.489921	7:-96455554	MsaT040084.1:CDS
AAGAGCTTGGATTGAAGCTA+GGG	0.532871	7:-96455057	MsaT040084.1:CDS
AATGATCAAAGGGAAGAACT+TGG	0.504968	7:-96454828	MsaT040084.1:CDS
AATTTAGAAGCTGAAACTAC+TGG	0.509455	7:-96456488	MsaT040084.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	96454686	96456813	96454686	ID=MsaG040084
Chr7	mRNA	96454686	96456813	96454686	ID=MsaT040084.1;Parent=MsaG040084
Chr7	exon	96454686	96455658	96454686	ID=MsaT040084.1.exon2;Parent=MsaT040084.1
Chr7	CDS	96454686	96455658	96454686	ID=cds.MsaT040084.1;Parent=MsaT040084.1
Chr7	exon	96456353	96456813	96456353	ID=MsaT040084.1.exon1;Parent=MsaT040084.1
Chr7	CDS	96456353	96456813	96456353	ID=cds.MsaT040084.1;Parent=MsaT040084.1

Gene Sequence

>MsaT040084.1

ATGGAAATGGAAGACCATAATCAACACTATGATAGTAATAGTATCACTGATCTCAGACAACTCATTAATATTGTTCCAAGATCAACTACCAACAATTTCCCTACGGCGGAGCTATTCCCCGCCGGCAACCCACATCAACAACACTATGAGATGATGATGTTTGGTAGACAAGTAGCAGATATAATGCCTCGTTGTCTTCATGATTTTGTTTCAACAGATTCACCTGCTGTTGCTGCTGTTACTGTTGCTACTGCCACTCCTACCAACACCACCACTAGTGCTTCAACTCCTTCATTTAGTGGTAATTTAGAAGCTGAAACTACTGGTTTCATTGGCGTTGATGCTTCAACTGGAAGATGGCCTAGACAAGAGACTCTTACACTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAAGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGCTATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAGACCAGGGAAGGAAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTTCGACAACTTGAAGCCTTATATGGAGAAAGCAATAATCCTTCTTCATCTTCACTCCCACAAAACAATTTTTGTACCAACAACAATCAGGAAATGTTTCATTCCCACATTAACAAACACTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCAACATATCATCGTCAGATGATGATCATAGTACTCATGAGGGGATCAAAGAGAATGAGTTCTCCATGGATAAGAGAAAAAAGAGGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGCTGAAGAAATTGGTGGAGAAGCAAGAAGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAAGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCTTGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAAAAATTAACGGGTAATAATGATGAGATAATAAAGACTCAATCTTCTTCTCATGATGGAAATAATAAGAAGAGAAAGGAAAACACAAGAAGTTGTTTTTACTTTGATGATAACAACAATGTTGATCGGTCTTGTTTATATAATGTTAACAATGGAGATGGAGCTGGTTCCTATTGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTACAAACAAATGATGGTTCAAATTCTAATAATGTTGTTGCAGCTGAAAGTTGTTTCCCATTCTTGATGAGTACTGAGGGAGGAAATATGTGGGAGAATTACAACTTGAAGGTTAACAAAGCAAACCAAAACCAGTGA

Protein sequence

>MsaT040084.1

MEMEDHNQHYDSNSITDLRQLINIVPRSTTNNFPTAELFPAGNPHQQHYEMMMFGRQVADIMPRCLHDFVSTDSPAVAAVTVATATPTNTTTSASTPSFSGNLEAETTGFIGVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTREGKAGRQDGKHYRFFRQLEALYGESNNPSSSSLPQNNFCTNNNQEMFHSHINKHCDSLSLTNSTEFNISSSDDDHSTHEGIKENEFSMDKRKKRSSGRSFWKVKIKDFIDSQLKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALQKLTGNNDEIIKTQSSSHDGNNKKRKENTRSCFYFDDNNNVDRSCLYNVNNGDGAGSYCDVNDQREELGRVQTNDGSNSNNVVAAESCFPFLMSTEGGNMWENYNLKVNKANQNQ*