AlfalfaGEDB | MsaG040129

M. sativa ssp. caerulea / MsaG040129

KEGG: K00621
GO: GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	XP_003625822.1	98.039	153	3	0	1	153	1	153	1.66e-103	303

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	sp\|Q9LFU9\|GNA1_ARATH	71.918	146	41	0	7	152	3	148	3.21e-73	219

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	tr\|G7KQU8\|G7KQU8_MEDTR	98.039	153	3	0	1	153	1	153	7.94e-104	303

TFs/TRs:

Gene ID	Type	Classification
MsaG040129	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000206	MsaG040129	0.819169	2.337657e-52	5.030099e-50
MsaG001660	MsaG040129	0.814309	2.840677e-51	5.396626e-49
MsaG001911	MsaG040129	0.803073	6.978423e-49	1.011797e-46
MsaG003529	MsaG040129	0.810283	2.129060e-50	3.661012e-48
MsaG004101	MsaG040129	0.806850	1.142214e-49	1.808502e-47
MsaG006177	MsaG040129	0.821804	5.845521e-53	1.348518e-50
MsaG006898	MsaG040129	0.821491	6.898848e-53	1.578401e-50
MsaG008085	MsaG040129	0.816588	8.889580e-52	1.789174e-49
MsaG008372	MsaG040129	0.807051	1.036376e-49	1.648719e-47
MsaG009060	MsaG040129	0.839582	2.683163e-57	1.033733e-54
MsaG009850	MsaG040129	0.801248	1.649410e-48	2.293806e-46
MsaG011285	MsaG040129	0.835196	3.520122e-56	1.186017e-53
MsaG012778	MsaG040129	0.824453	1.417903e-53	3.513913e-51
MsaG013912	MsaG040129	0.818313	3.648092e-52	7.676023e-50
MsaG014483	MsaG040129	0.844444	1.409819e-58	6.342840e-56
MsaG014542	MsaG040129	0.837648	8.426482e-57	3.057226e-54
MsaG015039	MsaG040129	0.818575	3.184372e-52	6.746060e-50
MsaG015807	MsaG040129	0.838822	4.212488e-57	1.585110e-54
MsaG016078	MsaG040129	0.800684	2.148090e-48	2.949696e-46
MsaG016163	MsaG040129	0.813149	5.101324e-51	9.413517e-49
MsaG017105	MsaG040129	0.829809	7.512083e-55	2.162149e-52
MsaG017526	MsaG040129	0.822815	3.413765e-53	8.092526e-51
MsaG019215	MsaG040129	0.800214	2.675848e-48	3.635285e-46
MsaG019296	MsaG040129	0.808860	4.289772e-50	7.127183e-48
MsaG021056	MsaG040129	0.829880	7.219828e-55	2.082353e-52
MsaG021380	MsaG040129	0.844169	1.669842e-58	7.445375e-56
MsaG022227	MsaG040129	0.804553	3.449704e-49	5.176025e-47
MsaG023475	MsaG040129	0.809426	3.248835e-50	5.471838e-48
MsaG025492	MsaG040129	0.814436	2.663766e-51	5.076804e-49
MsaG028688	MsaG040129	0.812646	6.568257e-51	1.196909e-48
MsaG028761	MsaG040129	0.820678	1.059602e-52	2.372542e-50
MsaG029201	MsaG040129	0.812018	8.991710e-51	1.613242e-48
MsaG030331	MsaG040129	0.840327	1.718833e-57	6.779295e-55
MsaG034285	MsaG040129	0.838060	6.610542e-57	2.429048e-54
MsaG034444	MsaG040129	0.801993	1.162332e-48	1.644025e-46
MsaG035190	MsaG040129	0.802194	1.057316e-48	1.502360e-46
MsaG036509	MsaG040129	0.815664	1.426574e-51	2.804468e-49
MsaG039429	MsaG040129	0.830506	5.085329e-55	1.493098e-52
MsaG040129	MsaG040130	0.858351	1.708502e-62	1.248203e-59
MsaG040129	MsaG040350	0.849229	7.020752e-60	3.706539e-57
MsaG040129	MsaG040381	0.808270	5.724939e-50	9.377401e-48
MsaG040129	MsaG040388	0.811937	9.364591e-51	1.676853e-48
MsaG040129	MsaG040406	0.823527	2.332340e-53	5.636479e-51
MsaG040129	MsaG040409	0.813437	4.413545e-51	8.203369e-49
MsaG040129	MsaG040474	0.813001	5.494149e-51	1.010121e-48
MsaG040129	MsaG043392	0.806500	1.353062e-49	2.124857e-47
MsaG040129	MsaG044048	0.801760	1.297104e-48	1.824960e-46
MsaG040129	MsaG044623	0.835982	2.231307e-56	7.697168e-54
MsaG040129	MsaG045060	0.816483	9.382481e-52	1.883277e-49
MsaG040129	MsaG046113	0.810064	2.372605e-50	4.058056e-48
MsaG040129	MsaG000843	0.818226	3.817713e-52	8.015111e-50
MsaG040129	MsaG008766	0.805703	1.987175e-49	3.062421e-47
MsaG040129	MsaG008452	0.803850	4.824762e-49	7.122034e-47
MsaG040129	MsaG017014	0.814095	3.165779e-51	5.982052e-49
MsaG040129	MsaG014865	0.803235	6.463838e-49	9.406916e-47
MsaG040129	MsaG011352	0.832079	2.095763e-55	6.441081e-53
MsaG040129	MsaG019886	0.840790	1.302147e-57	5.210847e-55
MsaG040129	MsaG030954	0.805146	2.596786e-49	3.950355e-47
MsaG040129	MsaG030190	0.837855	7.459895e-57	2.723718e-54
MsaG040129	MsaG040778	0.813294	4.741542e-51	8.781160e-49
MsaG040129	MsaG041447	0.826459	4.774141e-54	1.250565e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	MtrunA17_Chr7g0266301	98.039	153	3	0	1	153	1	153	1.53e-107	303

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	AT5G15770.1	71.918	146	41	0	7	152	3	148	3.27e-74	219

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCCGTTGCAATAATCTTTC+CGG	0.199227	7:-97017275	None:intergenic
GTCTGTAATCTCTAATCTTC+TGG	0.252175	7:-97017113	None:intergenic
TCGTTCTGTTGGGTGTTATA+AGG	0.300594	7:+97017429	MsaT040129.1:CDS
TAAGAAATTGTGGTAAAGTT+GGG	0.348212	7:+97017323	MsaT040129.1:CDS
TTAAGAAATTGTGGTAAAGT+TGG	0.366943	7:+97017322	MsaT040129.1:CDS
ACCGATCATGCTCGTTCTGT+TGG	0.371791	7:+97017418	MsaT040129.1:CDS
AGTGCTCGTGGGAAACAATT+GGG	0.376890	7:+97017373	MsaT040129.1:CDS
ACCGGAAAGATTATTGCAAC+GGG	0.406061	7:+97017274	MsaT040129.1:CDS
GTTATTGAAGATGAGATTAC+CGG	0.417687	7:+97017256	MsaT040129.1:CDS
AAGTGCTCGTGGGAAACAAT+TGG	0.427736	7:+97017372	MsaT040129.1:CDS
CCGATCATGCTCGTTCTGTT+GGG	0.443895	7:+97017419	MsaT040129.1:CDS
AGTCTCTGATAAGGAATTTG+AGG	0.451854	7:+97017186	MsaT040129.1:CDS
TTGTGATTCAGTCTCTGATA+AGG	0.468883	7:+97017177	MsaT040129.1:CDS
TTTCGAGAGGTTGATTCACT+TGG	0.471380	7:+97017214	MsaT040129.1:CDS
CGATTGCAGTGTTGAGAACA+AGG	0.494534	7:+97017459	MsaT040129.1:CDS
CTATGAGAAATGTGGTTTCA+AGG	0.496011	7:+97017486	MsaT040129.1:CDS
GAAATGTGGTTTCAAGGAGA+AGG	0.521442	7:+97017492	MsaT040129.1:CDS
CCCAACAGAACGAGCATGAT+CGG	0.532044	7:-97017419	None:intergenic
CAAGGAGAAGGAAGTTCAGA+TGG	0.539559	7:+97017504	MsaT040129.1:CDS
TACCGGAAAGATTATTGCAA+CGG	0.546187	7:+97017273	MsaT040129.1:CDS
GTTGTGGATTCAAGTGCTCG+TGG	0.610212	7:+97017361	MsaT040129.1:CDS
ATTTGAGGATCGATTTCGAG+AGG	0.616403	7:+97017201	MsaT040129.1:CDS
GCATATAGAAGATGTTGTTG+TGG	0.621571	7:+97017345	MsaT040129.1:CDS
GTGCTCGTGGGAAACAATTG+GGG	0.624260	7:+97017374	MsaT040129.1:CDS
TTGTGGATTCAAGTGCTCGT+GGG	0.642750	7:+97017362	MsaT040129.1:CDS
AAGGTGTTCTATGAGAAATG+TGG	0.671486	7:+97017478	MsaT040129.1:CDS
TTAGAAGATGCAAAACAGTG+AGG	0.719583	7:+97017075	None:intergenic
CCGGAAAGATTATTGCAACG+GGG	0.727047	7:+97017275	MsaT040129.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	97017082	97017543	97017082	ID=MsaG040129
Chr7	mRNA	97017082	97017543	97017082	ID=MsaT040129.1;Parent=MsaG040129
Chr7	exon	97017082	97017543	97017082	ID=MsaT040129.1.exon1;Parent=MsaT040129.1
Chr7	CDS	97017082	97017543	97017082	ID=cds.MsaT040129.1;Parent=MsaT040129.1

Gene Sequence

>MsaT040129.1

ATGCAAAACAGTGAGGAACAAAAGTATAGAGCCAGAAGATTAGAGATTACAGACAAGAAAAAAGGTTTCATAGAATTACTACAACAGCTTAGCGTTTGTGATTCAGTCTCTGATAAGGAATTTGAGGATCGATTTCGAGAGGTTGATTCACTTGGAGATGATCATGTTATATGTGTTATTGAAGATGAGATTACCGGAAAGATTATTGCAACGGGGAGTGTGTTTATTGAGAAGAAATTTTTAAGAAATTGTGGTAAAGTTGGGCATATAGAAGATGTTGTTGTGGATTCAAGTGCTCGTGGGAAACAATTGGGGAAGAAAGTAATTAACTTTCTTACCGATCATGCTCGTTCTGTTGGGTGTTATAAGGTAATTCTCGATTGCAGTGTTGAGAACAAGGTGTTCTATGAGAAATGTGGTTTCAAGGAGAAGGAAGTTCAGATGGCTATGTATTTTGTTTGA

Protein sequence

>MsaT040129.1

MQNSEEQKYRARRLEITDKKKGFIELLQQLSVCDSVSDKEFEDRFREVDSLGDDHVICVIEDEITGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSARGKQLGKKVINFLTDHARSVGCYKVILDCSVENKVFYEKCGFKEKEVQMAMYFV*