AlfalfaGEDB | MsaG040129

KEGG: K00621
GO: GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	XP_003625822.1	98.039	153	3	0	1	153	1	153	1.66e-103	303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	sp\|Q9LFU9\|GNA1_ARATH	71.918	146	41	0	7	152	3	148	3.21e-73	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	tr\|G7KQU8\|G7KQU8_MEDTR	98.039	153	3	0	1	153	1	153	7.94e-104	303

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040129	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000206	MsaG040129	0.819169	2.337657e-52	5.030099e-50
MsaG001660	MsaG040129	0.814309	2.840677e-51	5.396626e-49
MsaG001911	MsaG040129	0.803073	6.978423e-49	1.011797e-46
MsaG003529	MsaG040129	0.810283	2.129060e-50	3.661012e-48
MsaG004101	MsaG040129	0.806850	1.142214e-49	1.808502e-47
MsaG006177	MsaG040129	0.821804	5.845521e-53	1.348518e-50
MsaG006898	MsaG040129	0.821491	6.898848e-53	1.578401e-50
MsaG008085	MsaG040129	0.816588	8.889580e-52	1.789174e-49
MsaG008372	MsaG040129	0.807051	1.036376e-49	1.648719e-47
MsaG009060	MsaG040129	0.839582	2.683163e-57	1.033733e-54

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	MtrunA17_Chr7g0266301	98.039	153	3	0	1	153	1	153	1.53e-107	303

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040129	AT5G15770.1	71.918	146	41	0	7	152	3	148	3.27e-74	219

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTGTTCTATGAGAAATG+TGG	0.671486	7:+97017478	MsaT040129.1:CDS
AAGTGCTCGTGGGAAACAAT+TGG	0.427736	7:+97017372	MsaT040129.1:CDS
ACCGATCATGCTCGTTCTGT+TGG	0.371791	7:+97017418	MsaT040129.1:CDS
ACCGGAAAGATTATTGCAAC+GGG	0.406061	7:+97017274	MsaT040129.1:CDS
AGTCTCTGATAAGGAATTTG+AGG	0.451854	7:+97017186	MsaT040129.1:CDS
AGTGCTCGTGGGAAACAATT+GGG	0.376890	7:+97017373	MsaT040129.1:CDS
ATTTGAGGATCGATTTCGAG+AGG	0.616403	7:+97017201	MsaT040129.1:CDS
CAAGGAGAAGGAAGTTCAGA+TGG	0.539559	7:+97017504	MsaT040129.1:CDS
CCCAACAGAACGAGCATGAT+CGG	0.532044	7:-97017419	None:intergenic
CCCCGTTGCAATAATCTTTC+CGG	0.199227	7:-97017275	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	97017082	97017543	97017082	ID=MsaG040129
Chr7	mRNA	97017082	97017543	97017082	ID=MsaT040129.1;Parent=MsaG040129
Chr7	exon	97017082	97017543	97017082	ID=MsaT040129.1.exon1;Parent=MsaT040129.1
Chr7	CDS	97017082	97017543	97017082	ID=cds.MsaT040129.1;Parent=MsaT040129.1

Gene Sequence

>MsaT040129.1

ATGCAAAACAGTGAGGAACAAAAGTATAGAGCCAGAAGATTAGAGATTACAGACAAGAAAAAAGGTTTCATAGAATTACTACAACAGCTTAGCGTTTGTGATTCAGTCTCTGATAAGGAATTTGAGGATCGATTTCGAGAGGTTGATTCACTTGGAGATGATCATGTTATATGTGTTATTGAAGATGAGATTACCGGAAAGATTATTGCAACGGGGAGTGTGTTTATTGAGAAGAAATTTTTAAGAAATTGTGGTAAAGTTGGGCATATAGAAGATGTTGTTGTGGATTCAAGTGCTCGTGGGAAACAATTGGGGAAGAAAGTAATTAACTTTCTTACCGATCATGCTCGTTCTGTTGGGTGTTATAAGGTAATTCTCGATTGCAGTGTTGAGAACAAGGTGTTCTATGAGAAATGTGGTTTCAAGGAGAAGGAAGTTCAGATGGCTATGTATTTTGTTTGA

Protein sequence

>MsaT040129.1

MQNSEEQKYRARRLEITDKKKGFIELLQQLSVCDSVSDKEFEDRFREVDSLGDDHVICVIEDEITGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSARGKQLGKKVINFLTDHARSVGCYKVILDCSVENKVFYEKCGFKEKEVQMAMYFV*

M. sativa ssp. caerulea / MsaG040129