AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040160 MtrunA17_Chr7g0266701 96.498 257 7 2 1 255 1 257 0.0 518
MsaG040160 MtrunA17_Chr2g0321631 47.692 260 115 6 1 250 1 249 7.09e-81 243
MsaG040160 MtrunA17_Chr4g0026141 60.674 178 67 2 2 179 3 177 4.15e-75 229
MsaG040160 MtrunA17_Chr4g0038751 44.186 172 76 6 6 174 17 171 1.26e-42 147
MsaG040160 MtrunA17_Chr5g0417791 39.645 169 94 4 4 172 3 163 6.92e-38 133
MsaG040160 MtrunA17_Chr4g0076731 42.683 164 81 5 2 165 52 202 9.49e-38 137
MsaG040160 MtrunA17_Chr2g0326361 42.262 168 87 5 4 169 14 173 1.64e-36 131
MsaG040160 MtrunA17_Chr4g0042561 39.766 171 95 4 4 174 9 171 2.91e-36 129
MsaG040160 MtrunA17_Chr6g0453131 37.791 172 97 5 1 168 12 177 8.47e-36 131
MsaG040160 MtrunA17_Chr8g0384721 33.778 225 127 9 4 221 7 216 2.49e-35 127
MsaG040160 MtrunA17_Chr8g0361731 31.048 248 152 10 4 239 14 254 4.54e-35 129
MsaG040160 MtrunA17_Chr6g0481091 42.331 163 84 6 3 165 5 157 5.33e-35 125
MsaG040160 MtrunA17_Chr3g0109821 36.453 203 109 8 4 204 6 190 2.39e-34 130
MsaG040160 MtrunA17_Chr8g0359921 39.264 163 89 7 3 165 13 165 8.45e-34 124
MsaG040160 MtrunA17_Chr5g0400461 42.690 171 78 7 3 166 5 162 1.16e-33 124
MsaG040160 MtrunA17_Chr5g0433781 40.964 166 86 6 4 168 6 160 1.36e-33 128
MsaG040160 MtrunA17_Chr2g0318081 37.569 181 93 8 4 182 16 178 1.38e-33 124
MsaG040160 MtrunA17_Chr4g0018391 33.929 224 119 8 3 224 6 202 3.53e-33 123
MsaG040160 MtrunA17_Chr5g0417001 32.864 213 129 7 6 210 16 222 4.32e-33 124
MsaG040160 MtrunA17_Chr7g0263931 39.286 168 94 4 4 170 11 171 6.26e-33 122
MsaG040160 MtrunA17_Chr2g0309891 40.244 164 87 6 3 165 5 158 1.00e-32 122
MsaG040160 MtrunA17_Chr6g0453451 39.053 169 93 5 4 172 20 178 2.13e-32 120
MsaG040160 MtrunA17_Chr7g0252971 36.548 197 108 6 3 191 7 194 2.14e-32 121
MsaG040160 MtrunA17_Chr3g0130731 35.227 176 102 5 4 178 7 171 2.25e-32 120
MsaG040160 MtrunA17_Chr1g0147421 37.427 171 94 5 2 171 25 183 1.02e-31 119
MsaG040160 MtrunA17_Chr5g0398971 27.273 297 161 11 3 253 6 293 5.12e-31 117
MsaG040160 MtrunA17_Chr3g0139331 39.394 165 86 6 2 165 9 160 7.06e-31 117
MsaG040160 MtrunA17_Chr4g0054791 40.361 166 86 6 4 166 6 161 9.73e-31 116
MsaG040160 MtrunA17_Chr4g0047841 35.912 181 91 5 4 165 15 189 1.49e-30 116
MsaG040160 MtrunA17_Chr1g0201021 42.236 161 81 6 6 165 21 170 3.87e-30 118
MsaG040160 MtrunA17_Chr1g0200561 38.509 161 88 4 4 164 19 168 4.71e-30 115
MsaG040160 MtrunA17_Chr2g0318101 33.195 241 111 8 3 236 14 211 4.89e-30 115
MsaG040160 MtrunA17_Chr3g0124761 36.970 165 94 6 4 168 7 161 7.97e-30 113
MsaG040160 MtrunA17_Chr3g0130101 33.493 209 121 6 4 212 7 197 1.00e-29 114
MsaG040160 MtrunA17_Chr6g0484441 39.024 164 86 6 2 165 3 152 1.04e-29 113
MsaG040160 MtrunA17_Chr3g0128151 38.095 168 88 6 1 165 19 173 1.08e-29 117
MsaG040160 MtrunA17_Chr4g0060931 37.423 163 92 5 3 165 16 168 2.25e-29 113
MsaG040160 MtrunA17_Chr3g0091921 38.889 162 89 4 4 165 16 167 4.66e-29 111
MsaG040160 MtrunA17_Chr1g0183741 35.976 164 89 6 4 166 10 158 5.24e-29 110
MsaG040160 MtrunA17_Chr3g0128111 37.654 162 85 6 7 165 45 193 6.79e-29 109
MsaG040160 MtrunA17_Chr4g0056541 35.802 162 93 4 3 164 6 156 9.23e-29 112
MsaG040160 MtrunA17_Chr5g0405211 36.310 168 92 5 1 164 1 157 1.36e-28 111
MsaG040160 MtrunA17_Chr5g0428991 37.725 167 88 6 1 164 22 175 1.49e-28 113
MsaG040160 MtrunA17_Chr8g0346001 36.517 178 95 6 4 172 15 183 1.55e-28 112
MsaG040160 MtrunA17_Chr2g0316971 39.024 164 90 6 3 165 22 176 2.15e-28 111
MsaG040160 MtrunA17_Chr8g0372121 34.731 167 98 4 4 170 6 161 2.68e-28 109
MsaG040160 MtrunA17_Chr1g0197351 41.104 163 90 6 4 165 42 199 1.15e-27 110
MsaG040160 MtrunA17_Chr8g0385991 37.037 162 87 4 4 161 14 164 1.76e-27 105
MsaG040160 MtrunA17_Chr8g0345691 37.037 162 87 5 1 161 9 156 2.16e-27 108
MsaG040160 MtrunA17_Chr3g0144271 38.788 165 91 6 4 167 23 178 2.44e-27 108
MsaG040160 MtrunA17_Chr2g0311651 34.021 194 109 7 2 182 19 206 2.56e-27 107
MsaG040160 MtrunA17_Chr2g0311661 27.869 244 155 8 2 234 18 251 3.67e-27 106
MsaG040160 MtrunA17_Chr2g0309331 36.310 168 97 4 4 171 10 167 6.03e-27 106
MsaG040160 MtrunA17_Chr1g0197361 36.250 160 92 6 6 165 10 159 7.98e-27 108
MsaG040160 MtrunA17_Chr7g0261411 34.375 160 89 5 4 162 10 154 4.76e-26 103
MsaG040160 MtrunA17_Chr7g0217711 42.636 129 67 4 7 135 22 143 8.46e-26 99.8
MsaG040160 MtrunA17_Chr7g0214071 36.310 168 82 7 4 166 15 162 9.83e-26 101
MsaG040160 MtrunA17_Chr3g0092671 34.375 160 95 5 6 165 7 156 1.43e-25 104
MsaG040160 MtrunA17_Chr7g0217721 36.628 172 90 6 7 167 22 185 1.45e-25 103
MsaG040160 MtrunA17_Chr6g0461661 34.146 164 98 5 3 165 17 171 1.69e-25 103
MsaG040160 MtrunA17_Chr8g0364791 33.962 159 95 5 6 164 8 156 2.11e-25 103
MsaG040160 MtrunA17_Chr8g0345711 38.686 137 79 4 2 137 10 142 2.68e-25 98.2
MsaG040160 MtrunA17_Chr8g0384201 33.962 159 95 5 6 164 8 156 3.01e-25 103
MsaG040160 MtrunA17_Chr5g0442771 35.542 166 93 6 6 164 20 178 3.49e-25 101
MsaG040160 MtrunA17_Chr4g0017921 33.854 192 110 6 4 195 8 182 1.09e-24 100
MsaG040160 MtrunA17_Chr7g0253011 34.940 166 96 5 3 165 16 172 1.17e-24 100
MsaG040160 MtrunA17_Chr2g0312321 31.214 173 103 6 4 176 11 167 1.48e-23 96.7
MsaG040160 MtrunA17_Chr3g0131911 33.728 169 96 6 4 166 14 172 2.87e-23 94.7
MsaG040160 MtrunA17_Chr4g0050701 33.929 168 89 7 4 166 11 161 3.77e-23 93.2
MsaG040160 MtrunA17_Chr8g0345671 36.025 161 86 6 3 161 10 155 6.42e-23 96.3
MsaG040160 MtrunA17_Chr3g0113001 40.870 115 64 3 58 172 14 124 1.37e-20 88.6
MsaG040160 MtrunA17_Chr8g0345721 31.098 164 83 5 7 142 38 199 4.40e-20 85.5
MsaG040160 MtrunA17_Chr2g0321741 28.571 245 143 9 26 250 14 246 3.44e-19 85.5
MsaG040160 MtrunA17_Chr8g0345701 35.333 150 76 6 3 137 6 149 4.76e-19 82.0
MsaG040160 MtrunA17_Chr8g0345731 32.903 155 97 6 2 152 22 173 5.76e-18 79.0
MsaG040160 MtrunA17_Chr3g0113031 40.000 100 58 2 79 178 9 106 1.48e-17 79.7
MsaG040160 MtrunA17_Chr8g0345741 35.156 128 78 4 15 141 2 125 2.50e-17 76.6
MsaG040160 MtrunA17_Chr7g0243371 42.308 78 43 2 60 135 13 90 9.76e-16 71.2
MsaG040160 MtrunA17_Chr3g0130321 28.655 171 100 7 4 166 7 163 2.25e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040160 AT5G22380.1 45.968 248 118 3 2 249 3 234 6.68e-76 230
MsaG040160 AT3G44350.2 45.850 253 107 6 7 249 8 240 1.81e-72 222
MsaG040160 AT3G44350.1 53.797 158 68 3 7 164 8 160 1.49e-58 183
MsaG040160 AT2G17040.1 43.931 173 75 6 6 174 8 162 4.16e-42 145
MsaG040160 AT4G17980.1 43.114 167 81 7 4 166 6 162 2.67e-39 137
MsaG040160 AT4G17980.2 43.114 167 81 7 4 166 6 162 4.74e-39 137
MsaG040160 AT2G02450.1 41.436 181 90 6 6 186 53 217 1.05e-38 139
MsaG040160 AT2G02450.2 41.436 181 90 6 6 186 53 217 1.58e-38 139
MsaG040160 AT5G08790.1 32.157 255 150 6 3 242 6 252 5.13e-38 134
MsaG040160 AT1G69490.1 35.865 237 136 7 4 234 9 235 1.72e-36 130
MsaG040160 AT4G27410.2 33.175 211 121 6 3 213 13 203 1.77e-36 131
MsaG040160 AT5G63790.1 34.862 218 119 6 3 216 49 247 1.58e-35 129
MsaG040160 AT5G63790.2 33.659 205 123 5 3 202 59 255 1.85e-35 129
MsaG040160 AT5G46590.1 43.293 164 83 6 4 166 6 160 6.28e-35 127
MsaG040160 AT1G65910.1 40.206 194 103 8 4 196 6 187 6.82e-35 132
MsaG040160 AT4G27410.3 32.143 224 123 7 3 213 13 220 1.26e-34 126
MsaG040160 AT1G26870.1 33.716 261 135 10 2 239 14 259 1.30e-34 129
MsaG040160 AT5G17260.1 36.759 253 120 14 3 246 5 226 2.35e-34 129
MsaG040160 AT1G32510.1 41.176 170 84 6 4 166 6 166 3.71e-34 124
MsaG040160 AT3G15500.1 38.272 162 88 5 3 164 13 162 3.88e-34 125
MsaG040160 AT3G17730.1 41.718 163 85 6 3 165 5 157 4.51e-34 123
MsaG040160 AT1G01720.1 34.392 189 112 5 4 192 7 183 4.56e-33 122
MsaG040160 AT1G52890.1 37.267 161 89 5 4 164 14 162 9.65e-33 122
MsaG040160 AT5G46590.2 41.722 151 82 4 4 153 6 151 2.81e-32 119
MsaG040160 AT3G03200.1 44.242 165 75 7 4 164 6 157 1.06e-31 122
MsaG040160 AT1G33060.2 40.361 166 85 6 1 164 21 174 1.30e-31 122
MsaG040160 AT1G33060.1 40.361 166 85 6 1 164 21 174 1.39e-31 122
MsaG040160 AT1G61110.1 35.429 175 98 5 3 169 15 182 1.77e-31 118
MsaG040160 AT1G34180.3 41.718 163 79 6 6 165 18 167 1.93e-31 120
MsaG040160 AT5G39820.1 34.513 226 120 9 2 207 18 235 2.27e-31 118
MsaG040160 AT3G04060.1 39.157 166 86 5 3 165 19 172 2.29e-31 118
MsaG040160 AT2G24430.2 38.462 169 91 6 4 171 16 172 2.70e-31 118
MsaG040160 AT2G24430.1 38.462 169 91 6 4 171 16 172 2.70e-31 118
MsaG040160 AT3G49530.2 37.500 168 96 4 1 168 10 168 3.16e-31 119
MsaG040160 AT4G35580.1 39.024 164 90 5 1 164 6 159 3.64e-31 120
MsaG040160 AT4G35580.2 39.024 164 90 5 1 164 6 159 4.33e-31 120
MsaG040160 AT4G35580.3 39.024 164 90 5 1 164 6 159 4.61e-31 120
MsaG040160 AT1G34180.1 41.718 163 79 6 6 165 18 167 4.72e-31 120
MsaG040160 AT5G62380.2 36.585 164 93 5 1 164 4 156 5.82e-31 117
MsaG040160 AT5G62380.1 36.585 164 93 5 1 164 4 156 5.82e-31 117
MsaG040160 AT3G49530.1 30.769 260 156 6 1 253 10 252 6.23e-31 119
MsaG040160 AT5G24590.2 39.634 164 90 5 1 164 10 164 1.19e-30 118
MsaG040160 AT1G77450.1 36.364 165 95 5 4 168 10 164 1.24e-30 114
MsaG040160 AT5G61430.1 38.650 163 90 6 3 165 15 167 1.42e-30 116
MsaG040160 AT2G43000.1 32.836 201 122 5 6 205 20 208 2.44e-30 114
MsaG040160 AT1G71930.2 31.330 233 136 7 1 224 1 218 4.30e-30 115
MsaG040160 AT1G71930.1 31.330 233 136 7 1 224 1 218 4.30e-30 115
MsaG040160 AT1G34180.4 39.766 171 83 6 6 165 18 179 6.21e-30 117
MsaG040160 AT3G18400.1 37.500 168 92 5 2 169 3 157 7.19e-30 114
MsaG040160 AT4G36160.1 37.654 162 90 4 3 164 9 159 8.17e-30 115
MsaG040160 AT4G36160.3 37.654 162 90 4 3 164 9 159 8.17e-30 115
MsaG040160 AT4G36160.2 37.654 162 90 4 3 164 13 163 9.90e-30 115
MsaG040160 AT1G34180.2 39.766 171 83 6 6 165 18 179 1.26e-29 117
MsaG040160 AT3G10490.1 37.349 166 93 6 3 167 26 181 1.47e-29 111
MsaG040160 AT3G15510.1 37.791 172 94 5 8 172 21 186 1.48e-29 114
MsaG040160 AT2G27300.1 41.985 131 70 3 4 134 14 138 1.57e-29 114
MsaG040160 AT5G22290.1 41.727 139 73 4 6 142 23 155 1.84e-29 113
MsaG040160 AT2G18060.3 37.267 161 90 4 4 164 9 158 2.55e-29 114
MsaG040160 AT2G18060.1 37.267 161 90 4 4 164 9 158 2.55e-29 114
MsaG040160 AT3G10480.1 39.024 164 89 7 3 165 26 179 2.76e-29 115
MsaG040160 AT5G07680.2 36.196 163 94 4 3 165 2 154 3.02e-29 112
MsaG040160 AT5G07680.1 36.196 163 94 4 3 165 16 168 3.31e-29 112
MsaG040160 AT3G10480.2 39.394 165 86 7 3 165 26 178 5.48e-29 114
MsaG040160 AT1G34190.1 38.509 161 87 6 6 165 18 167 7.58e-29 114
MsaG040160 AT3G15170.1 39.264 163 89 6 4 165 20 173 8.56e-29 111
MsaG040160 AT3G44290.2 31.163 215 128 5 6 218 16 212 1.22e-28 108
MsaG040160 AT5G66300.1 27.622 286 162 8 3 254 11 285 1.71e-28 110
MsaG040160 AT3G12910.1 35.227 176 98 5 6 171 23 192 2.15e-28 110
MsaG040160 AT1G62700.1 37.888 161 89 7 4 164 7 156 2.76e-28 111
MsaG040160 AT1G62700.2 37.888 161 89 7 4 164 7 156 2.76e-28 111
MsaG040160 AT3G10490.2 37.805 164 91 6 3 165 26 179 4.17e-28 111
MsaG040160 AT3G44290.1 31.163 215 128 5 6 218 16 212 5.57e-28 109
MsaG040160 AT5G18270.2 36.196 163 95 3 3 165 20 173 6.78e-28 109
MsaG040160 AT1G32770.1 32.068 237 129 8 4 220 16 240 9.77e-28 109
MsaG040160 AT1G76420.1 39.286 168 79 7 4 165 22 172 1.10e-27 108
MsaG040160 AT3G04070.2 38.150 173 89 7 4 167 10 173 1.13e-27 108
MsaG040160 AT5G39610.1 34.409 186 108 6 3 188 19 190 1.17e-27 107
MsaG040160 AT5G53950.1 38.415 164 89 6 4 165 17 170 1.35e-27 109
MsaG040160 AT1G54330.1 36.810 163 90 4 3 165 5 154 1.42e-27 107
MsaG040160 AT5G18270.1 36.196 163 95 3 3 165 20 173 1.47e-27 108
MsaG040160 AT1G12260.2 35.185 162 94 6 3 164 6 156 1.61e-27 108
MsaG040160 AT1G12260.1 35.185 162 94 6 3 164 6 156 3.17e-27 108
MsaG040160 AT1G79580.3 36.905 168 95 5 4 171 17 173 1.13e-26 106
MsaG040160 AT1G79580.5 36.905 168 95 5 4 171 17 173 1.13e-26 106
MsaG040160 AT1G79580.4 36.905 168 95 5 4 171 17 173 1.13e-26 106
MsaG040160 AT1G79580.2 36.905 168 95 5 4 171 17 173 1.13e-26 106
MsaG040160 AT1G79580.1 36.905 168 95 5 4 171 17 173 1.13e-26 106
MsaG040160 AT3G61910.1 31.551 187 116 4 4 182 11 193 2.00e-26 105
MsaG040160 AT5G64060.1 34.545 165 94 6 3 165 5 157 3.31e-26 105
MsaG040160 AT3G04070.1 36.702 188 87 8 4 167 10 189 3.94e-26 105
MsaG040160 AT4G01550.1 38.272 162 85 5 7 166 7 155 8.26e-26 105
MsaG040160 AT2G46770.1 34.078 179 102 5 4 172 16 188 1.69e-25 103
MsaG040160 AT3G10500.1 35.152 165 93 7 3 165 8 160 5.09e-25 103
MsaG040160 AT3G12977.1 35.714 168 87 7 3 165 17 168 5.91e-25 100
MsaG040160 AT3G10480.3 32.143 196 91 7 3 165 26 212 1.11e-24 102
MsaG040160 AT3G29035.1 35.000 160 94 5 3 162 23 172 1.79e-24 99.8
MsaG040160 AT5G04410.1 36.196 163 94 6 3 165 8 160 1.91e-24 102
MsaG040160 AT1G33280.1 34.731 167 97 4 4 170 8 162 2.07e-24 99.4
MsaG040160 AT4G28530.1 30.899 178 95 5 4 166 10 174 2.85e-24 99.8
MsaG040160 AT5G09330.5 33.951 162 95 6 4 164 6 156 3.38e-24 101
MsaG040160 AT5G09330.2 33.951 162 95 6 4 164 6 156 3.38e-24 101
MsaG040160 AT5G09330.4 33.951 162 95 6 4 164 6 156 3.38e-24 101
MsaG040160 AT5G09330.3 33.951 162 95 6 4 164 6 156 3.38e-24 101
MsaG040160 AT5G09330.1 33.951 162 95 6 4 164 6 156 3.38e-24 101
MsaG040160 AT4G10350.1 34.320 169 102 4 4 172 9 168 5.08e-24 99.0
MsaG040160 AT1G32870.2 37.654 162 91 6 4 165 10 161 5.45e-24 100
MsaG040160 AT1G32870.1 37.654 162 91 6 4 165 10 161 5.95e-24 100
MsaG040160 AT1G56010.2 32.335 167 95 5 4 165 19 172 5.96e-24 98.6
MsaG040160 AT5G13180.1 35.366 164 90 6 4 166 14 162 6.09e-24 97.1
MsaG040160 AT2G33480.2 33.742 163 91 5 4 166 15 160 6.95e-24 97.4
MsaG040160 AT1G32870.3 37.654 162 91 6 4 165 46 197 8.03e-24 100
MsaG040160 AT2G33480.1 33.129 163 94 5 4 166 15 162 2.37e-23 95.9
MsaG040160 AT1G52880.1 37.195 164 91 5 8 165 21 178 1.07e-22 95.1
MsaG040160 AT5G04395.1 37.086 151 80 5 3 141 27 174 6.92e-22 90.1
MsaG040160 AT4G01520.1 31.325 166 98 5 5 167 5 157 1.49e-21 91.7
MsaG040160 AT3G56530.1 32.704 159 96 3 4 162 52 199 6.39e-21 90.1
MsaG040160 AT3G55210.1 31.176 170 93 5 4 162 11 167 6.43e-21 89.7
MsaG040160 AT4G01540.3 32.317 164 95 5 7 167 7 157 8.83e-21 90.9
MsaG040160 AT4G01540.4 32.317 164 95 5 7 167 7 157 1.06e-20 90.5
MsaG040160 AT4G01540.2 32.317 164 95 5 7 167 7 157 1.11e-20 90.9
MsaG040160 AT4G01540.1 32.317 164 95 5 7 167 7 157 1.15e-20 90.9
MsaG040160 AT5G61430.2 40.196 102 57 2 64 165 7 104 2.72e-20 87.8
MsaG040160 AT3G04420.2 31.098 164 99 5 1 164 1 150 1.41e-18 83.6
MsaG040160 AT3G04420.1 35.294 136 84 4 1 136 1 132 1.90e-18 83.6
MsaG040160 AT5G64530.1 33.824 136 65 7 3 134 2 116 1.17e-17 79.0
MsaG040160 AT1G56010.1 37.255 102 61 2 64 165 7 105 1.21e-17 80.1
MsaG040160 AT5G64530.2 33.824 136 65 7 3 134 2 116 1.26e-17 77.8
MsaG040160 AT1G01010.1 30.366 191 109 7 7 187 6 182 3.23e-17 80.9
MsaG040160 AT3G12977.2 37.255 102 59 2 64 165 19 115 5.49e-17 77.8
MsaG040160 AT1G02230.1 33.750 160 88 7 5 161 4 148 1.89e-16 78.2
MsaG040160 AT1G02250.1 32.919 161 88 8 5 161 4 148 2.96e-16 77.8
MsaG040160 AT4G10350.2 35.185 108 64 2 65 172 20 121 1.01e-15 75.5
MsaG040160 AT3G10490.4 41.463 82 43 2 84 165 3 79 3.29e-15 74.7
MsaG040160 AT3G10490.3 41.463 82 43 2 84 165 3 79 3.29e-15 74.7
MsaG040160 AT2G18060.2 45.455 77 34 3 88 164 2 70 8.20e-15 72.8
MsaG040160 AT2G43000.2 38.384 99 56 2 81 179 11 104 9.52e-15 71.2
MsaG040160 AT2G33480.3 35.294 102 56 3 67 166 12 105 2.77e-14 70.1
MsaG040160 AT1G02220.1 27.389 157 98 5 5 161 4 144 4.33e-13 68.6
MsaG040160 AT3G04430.1 35.514 107 64 3 10 116 6 107 2.08e-12 64.7
MsaG040160 AT5G14000.2 31.343 134 79 5 4 134 15 138 7.70e-12 62.4
MsaG040160 AT5G22290.2 53.571 56 23 2 89 142 2 56 8.06e-12 63.9
MsaG040160 AT5G14000.1 31.343 134 79 5 4 134 15 138 1.20e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGCAAGTTGAATCTTTC+TGG 0.167753 7:-97303445 None:intergenic
GAGCAAGTGGATTGGTTCTT+AGG 0.188696 7:+97303608 MsaT040160.1:CDS
CTCACTTCACTTTCTTGCCT+TGG 0.279048 7:-97302621 None:intergenic
AAGAGGATGTTTCATCTAAC+TGG 0.287039 7:-97302821 None:intergenic
TCTTCAGATAATCGCATCAT+TGG 0.352302 7:+97302714 MsaT040160.1:CDS
TTGGAAAATGAACGAGTATA+AGG 0.364384 7:+97302794 MsaT040160.1:CDS
TCTGAAGAATAAACATGATT+AGG 0.369085 7:-97302699 None:intergenic
TTATGATGCTTTGTTGGATT+GGG 0.384703 7:+97303586 MsaT040160.1:CDS
ATTATGATGCTTTGTTGGAT+TGG 0.386486 7:+97303585 MsaT040160.1:CDS
TGCTGATTATGATGCTTTGT+TGG 0.395773 7:+97303580 MsaT040160.1:CDS
TATCTTCACAATATGCTTGA+AGG 0.404066 7:+97302066 MsaT040160.1:CDS
CATTGGAGTGAAAAGAACTA+TGG 0.407082 7:+97302731 MsaT040160.1:CDS
CCAGTGTTGGTGAGACGCTT+TGG 0.428965 7:-97302654 None:intergenic
CATAATCAGCAATATCCATT+TGG 0.446503 7:-97303568 None:intergenic
GAAATAAGCTCTTCTTCTGT+AGG 0.449332 7:-97302039 None:intergenic
ACATGGGTTGTAACCTTCCT+TGG 0.454170 7:-97303404 None:intergenic
TATATTAACGACTGGTATAA+CGG 0.454373 7:-97302112 None:intergenic
AGCAAGTGGATTGGTTCTTA+GGG 0.460177 7:+97303609 MsaT040160.1:CDS
TCTATAGAGGAAGAGCTCTC+TGG 0.482763 7:-97303509 None:intergenic
TTTATACGTGGGAGTTGTGA+TGG 0.487627 7:-97302147 None:intergenic
CAAATGGAAAGAAAACTGAT+TGG 0.496748 7:+97302775 MsaT040160.1:CDS
CCAAAGCGTCTCACCAACAC+TGG 0.504150 7:+97302654 MsaT040160.1:CDS
AGCTTCTCCAACCTCTTGTG+AGG 0.507371 7:-97303543 None:intergenic
GTCTCACCAACACTGGGTAC+TGG 0.511931 7:+97302661 MsaT040160.1:CDS
TTCAAACAAAGTAGCTCCTA+AGG 0.519978 7:+97302842 MsaT040160.1:CDS
AGGAGCTACTTTGTTTGAAG+AGG 0.523871 7:-97302838 None:intergenic
ATAAACATGATTAGGAGATC+CGG 0.525220 7:-97302691 None:intergenic
GGTTGGAGAAGCTAGCCAAA+TGG 0.532147 7:+97303553 MsaT040160.1:CDS
GGCTTTCCAGTACCCAGTGT+TGG 0.539246 7:-97302667 None:intergenic
AAATAAGCTCTTCTTCTGTA+GGG 0.541701 7:-97302038 None:intergenic
TATAGTGGAAGAGCTCCAAA+TGG 0.542069 7:+97302759 MsaT040160.1:CDS
GCTTCTCCAACCTCTTGTGA+GGG 0.545254 7:-97303542 None:intergenic
TGGATTGGGAGCAAGTGGAT+TGG 0.559258 7:+97303600 MsaT040160.1:CDS
GGGTTGAACATGGTCTATAG+AGG 0.566952 7:-97303522 None:intergenic
TAATCGTATATATTAACGAC+TGG 0.569424 7:-97302120 None:intergenic
AGTGGATTGGTTCTTAGGGT+CGG 0.569927 7:+97303613 MsaT040160.1:CDS
GTTCAACCCTCACAAGAGGT+TGG 0.570806 7:+97303536 MsaT040160.1:CDS
TGGGTTGTAACCTTCCTTGG+TGG 0.577447 7:-97303401 None:intergenic
CCTCTTGTGAGGGTTGAACA+TGG 0.579803 7:-97303532 None:intergenic
GTTGTAACCTTCCTTGGTGG+TGG 0.584797 7:-97303398 None:intergenic
TAGACGACCACCACCAAGGA+AGG 0.610436 7:+97303391 MsaT040160.1:CDS
CCATGTTCAACCCTCACAAG+AGG 0.611064 7:+97303532 MsaT040160.1:CDS
CAAGAAAGTGAAGTGAGAGG+AGG 0.612857 7:+97302627 MsaT040160.1:CDS
ACATGATGTTCAAATCTCGA+TGG 0.619431 7:+97303466 MsaT040160.1:CDS
CAAAGCGTCTCACCAACACT+GGG 0.625021 7:+97302655 MsaT040160.1:CDS
GGATGTTTCATCTAACTGGA+TGG 0.629602 7:-97302817 None:intergenic
ACTGGGTACTGGAAAGCCAC+CGG 0.631430 7:+97302672 MsaT040160.1:CDS
TTTGTTGGATTGGGAGCAAG+TGG 0.640642 7:+97303595 MsaT040160.1:CDS
GTAGGGTAGAAACGATAACC+TGG 0.640687 7:-97302021 None:intergenic
AGTATGGACAATATGCCACC+AGG 0.650912 7:+97302003 None:intergenic
GTATGAGAGACACGGAACAA+TGG 0.656880 7:+97302586 MsaT040160.1:CDS
AGAGGCAAGTATGAGAGACA+CGG 0.662506 7:+97302578 MsaT040160.1:CDS
AGGCAAGAAAGTGAAGTGAG+AGG 0.663868 7:+97302624 MsaT040160.1:CDS
AACATGATTAGGAGATCCGG+TGG 0.670351 7:-97302688 None:intergenic
TTGATAGACGACCACCACCA+AGG 0.683488 7:+97303387 MsaT040160.1:CDS
GGGTAGAAACGATAACCTGG+TGG 0.760431 7:-97302018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 97302006 97303643 97302006 ID=MsaG040160
Chr7 mRNA 97302006 97303643 97302006 ID=MsaT040160.1;Parent=MsaG040160
Chr7 exon 97302006 97302162 97302006 ID=MsaT040160.1.exon1;Parent=MsaT040160.1
Chr7 CDS 97302006 97302162 97302006 ID=cds.MsaT040160.1;Parent=MsaT040160.1
Chr7 exon 97302568 97302863 97302568 ID=MsaT040160.1.exon2;Parent=MsaT040160.1
Chr7 CDS 97302568 97302863 97302568 ID=cds.MsaT040160.1;Parent=MsaT040160.1
Chr7 exon 97303329 97303643 97303329 ID=MsaT040160.1.exon3;Parent=MsaT040160.1
Chr7 CDS 97303329 97303643 97303329 ID=cds.MsaT040160.1;Parent=MsaT040160.1
Gene Sequence

>MsaT040160.1

ATGGACAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAGCTTATTTCGTTCTATCTTCACAATATGCTTGAAGGAGAGAAAGAATACACGATTCGTACCGTTATACCAGTCGTTAATATATACGATTACAATCCATCACAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGTGAGAGGAGGAAGACCAAAGCGTCTCACCAACACTGGGTACTGGAAAGCCACCGGATCTCCTAATCATGTTTATTCTTCAGATAATCGCATCATTGGAGTGAAAAGAACTATGGTTTTCTATAGTGGAAGAGCTCCAAATGGAAAGAAAACTGATTGGAAAATGAACGAGTATAAGGCCATCCAGTTAGATGAAACATCCTCTTCAAACAAAGTAGCTCCTAAGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAAAAATCAAAGTGCTTAAGGGCATTTGATAGACGACCACCACCAAGGAAGGTTACAACCCATGTTCAAAATGCTCAAGAGCACCAGAAAGATTCAACTTGCGAACATGATGTTCAAATCTCGATGGACATAAGTGCAACAAACTCACCAGAGAGCTCTTCCTCTATAGACCATGTTCAACCCTCACAAGAGGTTGGAGAAGCTAGCCAAATGGATATTGCTGATTATGATGCTTTGTTGGATTGGGAGCAAGTGGATTGGTTCTTAGGGTCGGAGCCATAA
Protein sequence

>MsaT040160.1

MDNMPPGYRFYPTEEELISFYLHNMLEGEKEYTIRTVIPVVNIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEVRGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGVKRTMVFYSGRAPNGKKTDWKMNEYKAIQLDETSSSNKVAPKLRQEFSLCRVYKKSKCLRAFDRRPPPRKVTTHVQNAQEHQKDSTCEHDVQISMDISATNSPESSSSIDHVQPSQEVGEASQMDIADYDALLDWEQVDWFLGSEP*