AlfalfaGEDB | MsaG040171

M. sativa ssp. caerulea / MsaG040171

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040171	XP_013450138.1	91.176	306	19	5	1	302	1	302	1.99e-175	497

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040171	sp\|Q9FNI3\|Y5625_ARATH	46.154	286	105	9	1	264	1	259	3.49e-67	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040171	tr\|A0A072U475\|A0A072U475_MEDTR	91.176	306	19	5	1	302	1	302	9.49e-176	497

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040171	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG040171	0.864323	2.631851e-64	2.420297e-61
MsaG000083	MsaG040171	0.874346	1.498464e-67	2.094326e-64
MsaG000113	MsaG040171	0.905538	9.125627e-80	6.496212e-76
MsaG000127	MsaG040171	0.808284	5.687354e-50	9.318845e-48
MsaG000128	MsaG040171	0.849620	5.467212e-60	2.925387e-57
MsaG000140	MsaG040171	0.818049	4.184410e-52	8.744811e-50
MsaG000151	MsaG040171	0.861151	2.474338e-63	2.009956e-60
MsaG000153	MsaG040171	0.862954	6.972293e-64	6.073905e-61
MsaG000164	MsaG040171	0.805345	2.360659e-49	3.607741e-47
MsaG000179	MsaG040171	0.816505	9.275499e-52	1.862893e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040171	MtrunA17_Chr7g0266821	91.176	306	19	5	1	302	1	302	1.83e-179	497
MsaG040171	MtrunA17_Chr1g0178071	62.937	286	65	12	42	302	59	328	6.10e-103	304
MsaG040171	MtrunA17_Chr8g0345771	65.414	133	43	2	35	164	148	280	6.13e-52	178
MsaG040171	MtrunA17_Chr7g0276471	73.585	106	25	2	58	160	117	222	8.06e-48	166
MsaG040171	MtrunA17_Chr5g0422501	60.484	124	40	1	50	164	227	350	6.46e-45	157
MsaG040171	MtrunA17_Chr1g0198661	57.143	126	40	1	49	160	182	307	2.85e-41	147
MsaG040171	MtrunA17_Chr1g0213701	45.802	131	53	4	56	182	159	275	8.59e-29	112
MsaG040171	MtrunA17_Chr4g0012861	40.541	111	59	5	58	165	314	420	1.65e-15	77.0
MsaG040171	MtrunA17_Chr5g0432721	41.121	107	53	5	58	160	321	421	3.19e-15	76.3
MsaG040171	MtrunA17_Chr2g0281191	37.190	121	69	5	42	159	336	452	4.39e-15	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040171	AT5G06250.5	45.675	289	108	9	1	267	1	262	5.67e-69	215
MsaG040171	AT5G06250.4	46.154	286	105	9	1	264	1	259	3.35e-68	214
MsaG040171	AT5G06250.2	46.154	286	105	9	1	264	1	259	3.55e-68	214
MsaG040171	AT5G06250.3	44.983	289	89	8	1	264	1	244	1.95e-64	204
MsaG040171	AT5G06250.1	44.983	289	89	8	1	264	1	244	2.04e-64	204
MsaG040171	AT3G11580.1	51.923	208	80	4	54	247	24	225	3.25e-62	198
MsaG040171	AT2G36080.3	57.711	201	46	6	53	249	32	197	7.49e-62	196
MsaG040171	AT2G36080.1	57.711	201	46	6	53	249	32	197	7.61e-62	196
MsaG040171	AT3G11580.3	51.923	208	80	4	54	247	24	225	1.52e-61	200
MsaG040171	AT2G36080.4	80.357	112	18	1	53	160	32	143	2.41e-57	182

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Find 78 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCATGGTATGACA+AGG	0.637700	7:+97400652	None:intergenic
AAACCTGCATGGTATGACAA+GGG	0.685749	7:+97400653	None:intergenic
AAAGATAAACGTCTTGATGC+TGG	0.575473	7:-97400881	MsaT040171.1:CDS
AAATAGTTCGAGTACTTTCA+GGG	0.533392	7:-97399766	MsaT040171.1:CDS
AACGGTTGTTTATCTCGTGG+AGG	0.625722	7:-97400820	MsaT040171.1:CDS
AAGAAACAACATCACTATGG+TGG	0.609594	7:-97401249	MsaT040171.1:CDS
AAGGAGGTTGACGGTGGAGG+TGG	0.440000	7:+97399598	None:intergenic
ACAACCGTTGAGGATGTACA+CGG	0.701448	7:+97400834	None:intergenic
AGCAATCTGGTGACAAAGTT+TGG	0.259112	7:+97399670	None:intergenic
AGCAGATCCATCTGTAGTGA+TGG	0.561002	7:-97400758	MsaT040171.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	97399557	97401293	97399557	ID=MsaG040171
Chr7	mRNA	97399557	97401293	97399557	ID=MsaT040171.1;Parent=MsaG040171
Chr7	exon	97399557	97399828	97399557	ID=MsaT040171.1.exon2;Parent=MsaT040171.1
Chr7	CDS	97399557	97399828	97399557	ID=cds.MsaT040171.1;Parent=MsaT040171.1
Chr7	exon	97400657	97401293	97400657	ID=MsaT040171.1.exon1;Parent=MsaT040171.1
Chr7	CDS	97400657	97401293	97400657	ID=cds.MsaT040171.1;Parent=MsaT040171.1

Gene Sequence

>MsaT040171.1

ATGTCAATAAACCACACAATACAAGAAACAACATCACTATGGTGGAATCAACAACAACAACAAAGAACTCAACAAGATGCAGAAGAAGCTGAACTAGAAGATGATGTGGTTTTAGAATCAATAATGAAACTAAAAACAACAGAAGCATCATCAGAAGAAGAGAAAGAAGCTATGTTCGAGAAACCATTAACACCAAGCGACGTAGGGAAGTTGAACCGACTCGTTATTCCAAAACAACATGCTGAGAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGTTTGTTACTAAGTTTTGAGGATGAGTCAGGTAAGTGTTGGAGGTTCCGGTATTCATATTGGAACAGTAGTCAAAGCTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTGTACATCCTCAACGGTTGTTTATCTCGTGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCTCATGTTAGCAGATCCATCTGTAGTGATGGCAATGGGAATGGGAATAGCACTGTTCCTGTGGGGTGGTCCAGAGAACTCTATCCTGCGCATCCTTATCCTACTCATCATCATCCCTTGTCATACCATGCAGGTGAAGGGTCCCAAAGTCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTTCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCCCAAACTTTGTCACCAGATTGCTCTTATAATATGTCATCAACACAAGGCACAGCTATCCCACAATTCTACCACCACCTCCACCGTCAACCTCCTTCAAATCCTCACCATCACATGCTACGTCAACAACCATATTAG

Protein sequence

>MsaT040171.1

MSINHTIQETTSLWWNQQQQQRTQQDAEEAELEDDVVLESIMKLKTTEASSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVHPQRLFISWRRRHGSNSTPPAHVSRSICSDGNGNGNSTVPVGWSRELYPAHPYPTHHHPLSYHAGEGSQSQNTTTPCGNSSSTFRVLRLFGVNMECQPDNNININNINDSQTLSPDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY*