AlfalfaGEDB | MsaG040188

M. sativa ssp. caerulea / MsaG040188

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040188	XP_013450173.1	98.485	198	1	1	1	196	1	198	1.66e-141	402

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040188	sp\|Q3EAL1\|OFP6_ARATH	78.125	64	14	0	108	171	64	127	6.86e-32	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040188	tr\|G7ZUW3\|G7ZUW3_MEDTR	98.485	198	1	1	1	196	1	198	7.95e-142	402

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040188	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040188	MtrunA17_Chr7g0267111	98.485	198	1	1	1	196	1	198	1.53e-145	402
MsaG040188	MtrunA17_Chr1g0177881	56.771	192	68	3	1	188	1	181	1.55e-64	197
MsaG040188	MtrunA17_Chr4g0025901	37.234	188	98	5	1	180	1	176	5.85e-29	106
MsaG040188	MtrunA17_Chr5g0435131	36.782	174	83	5	4	174	6	155	8.31e-26	97.8
MsaG040188	MtrunA17_Chr4g0025911	35.227	176	89	3	1	172	1	155	1.35e-24	95.1
MsaG040188	MtrunA17_Chr8g0390531	47.297	74	39	0	101	174	249	322	1.88e-17	79.0
MsaG040188	MtrunA17_Chr5g0432531	47.826	69	36	0	110	178	186	254	4.29e-17	77.0
MsaG040188	MtrunA17_Chr4g0013081	42.029	69	40	0	103	171	307	375	2.49e-14	70.5
MsaG040188	MtrunA17_Chr7g0244571	40.000	70	42	0	102	171	273	342	6.87e-14	68.9
MsaG040188	MtrunA17_Chr8g0379681	42.647	68	39	0	108	175	256	323	1.72e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040188	AT2G36026.1	47.024	168	60	4	8	174	11	150	5.18e-35	122
MsaG040188	AT3G52525.1	78.125	64	14	0	108	171	64	127	6.98e-33	115
MsaG040188	AT2G18500.1	56.923	65	28	0	110	174	226	290	1.13e-20	87.8
MsaG040188	AT5G19650.1	52.381	63	30	0	109	171	153	215	4.66e-18	79.3
MsaG040188	AT5G58360.1	38.462	78	46	1	96	171	208	285	9.20e-14	68.6
MsaG040188	AT2G30400.1	48.387	62	32	0	110	171	252	313	1.43e-13	68.2
MsaG040188	AT1G06920.1	43.077	65	37	0	110	174	243	307	1.75e-13	68.2
MsaG040188	AT5G01840.1	44.118	68	38	0	114	181	202	269	1.36e-12	65.1
MsaG040188	AT4G18830.1	44.118	68	38	0	105	172	277	344	3.16e-12	64.7
MsaG040188	AT5G22240.1	43.077	65	37	0	110	174	96	160	6.98e-12	62.0

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGGTGGCAGTGTTTG+TGG	0.395839	7:+97615989	None:intergenic
AACACTGTGTCGGTGAAACT+AGG	0.582378	7:-97616176	MsaT040188.1:CDS
AACAGTTCAAAAGCTCTCTA+AGG	0.371057	7:+97615778	None:intergenic
AAGAGCTGGAGGAGAAGGTG+TGG	0.611252	7:-97615892	MsaT040188.1:CDS
AAGATCCTTATCTTGATTTC+AGG	0.232091	7:-97615851	MsaT040188.1:CDS
AAGGACCAAAGGAGAGTAGG+TGG	0.647195	7:-97615921	MsaT040188.1:CDS
AAGGACCAGATGAAGAGTAC+TGG	0.567259	7:+97616057	None:intergenic
AATAACCAGTACTCTTCATC+TGG	0.479074	7:-97616062	MsaT040188.1:CDS
ACAATAACACCATGATGATA+AGG	0.476139	7:+97615738	None:intergenic
AGCTGGAGGAGAAGGTGTGG+CGG	0.646351	7:-97615889	MsaT040188.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	97615635	97616228	97615635	ID=MsaG040188
Chr7	mRNA	97615635	97616228	97615635	ID=MsaT040188.1;Parent=MsaG040188
Chr7	exon	97615635	97616228	97615635	ID=MsaT040188.1.exon1;Parent=MsaT040188.1
Chr7	CDS	97615635	97616228	97615635	ID=cds.MsaT040188.1;Parent=MsaT040188.1

Gene Sequence

>MsaT040188.1

ATGTCTGGTTCAAGAAAGAAGCTTCTTCTGAACACTGTGTCGGTGAAACTAGGTTGTGGAAGCTGCAGAAGGCTAAAACTGAGTAACATATTCAGCCCAAAACCAAAATCCAAGAACCCCACTTACCAAAAACACAAACTTTACAATAACCAGTACTCTTCATCTGGTCCTTGGACTGAAGACAAATATGACAGTACAAGCACCCCAAACACTACAACCACAAACACTGCCACCACATTTTCACCATACTATTCCTCAAATTTTTCTGATTCAGATGCTTATGCAAAGGACCAAAGGAGAGTAGGTGGTTTAGGAAGAGCTGGAGGAGAAGGTGTGGCGGTGGAGAAAGATTCTGAAGATCCTTATCTTGATTTCAGGCATTCCATGCTTCAAATGATATTGGAGAATGAAATATACTCTAAAGATGACCTTAGAGAGCTTTTGAACTGTTTTCTTCAGCTGAATGCACCTTATCATCATGGTGTTATTGTTAGAGCTTTTACTGAGATTTGGAATGGAGTTTCAACTATGAGGCCTAGTTCACCCAGTTTGCATACATCTCGTACCCGTACCCGTAAGCCACGTCAACGTTAA

Protein sequence

>MsaT040188.1

MSGSRKKLLLNTVSVKLGCGSCRRLKLSNIFSPKPKSKNPTYQKHKLYNNQYSSSGPWTEDKYDSTSTPNTTTTNTATTFSPYYSSNFSDSDAYAKDQRRVGGLGRAGGEGVAVEKDSEDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNAPYHHGVIVRAFTEIWNGVSTMRPSSPSLHTSRTRTRKPRQR*