AlfalfaGEDB | MsaG040218

M. sativa ssp. caerulea / MsaG040218

KEGG: -
GO: GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040218	XP_013450217.1	97.001	667	13	1	1	667	1	660	0.0	1336

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040218	sp\|Q9SJ56\|BLH1_ARATH	48.797	748	234	33	1	667	1	680	8.05e-169	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040218	tr\|A0A072UEL8\|A0A072UEL8_MEDTR	97.001	667	13	1	1	667	1	660	0.0	1336

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040218	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040218	MtrunA17_Chr7g0267481	97.001	667	13	1	1	667	1	660	0.0	1336
MsaG040218	MtrunA17_Chr1g0177751	67.054	689	165	20	1	667	1	649	0.0	814
MsaG040218	MtrunA17_Chr4g0025521	45.455	759	274	24	1	667	1	711	9.34e-165	489
MsaG040218	MtrunA17_Chr1g0155681	56.146	301	97	8	153	433	146	431	4.22e-100	319
MsaG040218	MtrunA17_Chr3g0141941	54.676	278	94	6	172	435	163	422	2.16e-92	296
MsaG040218	MtrunA17_Chr8g0373801	53.929	280	122	2	172	447	389	665	1.35e-86	289
MsaG040218	MtrunA17_Chr5g0403251	46.061	330	156	4	172	490	339	657	3.36e-86	286
MsaG040218	MtrunA17_Chr8g0387321	52.416	269	115	4	160	421	170	432	9.81e-81	268
MsaG040218	MtrunA17_Chr3g0141931	46.622	296	129	7	169	451	163	442	1.63e-71	238
MsaG040218	MtrunA17_Chr4g0028701	42.724	323	142	7	174	458	248	565	5.89e-68	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040218	AT2G35940.3	48.797	748	234	33	1	667	1	680	8.18e-170	501
MsaG040218	AT2G35940.1	48.797	748	234	33	1	667	1	680	8.18e-170	501
MsaG040218	AT2G35940.2	48.797	748	234	33	1	667	1	680	8.18e-170	501
MsaG040218	AT2G16400.1	52.769	307	113	5	163	455	98	386	1.05e-96	306
MsaG040218	AT4G34610.2	52.308	325	129	7	132	446	94	402	1.50e-92	297
MsaG040218	AT4G34610.4	52.308	325	129	7	132	446	94	402	1.50e-92	297
MsaG040218	AT4G34610.3	52.308	325	129	7	132	446	94	402	1.50e-92	297
MsaG040218	AT4G34610.1	52.308	325	129	7	132	446	94	402	1.50e-92	297
MsaG040218	AT1G75410.1	53.608	291	114	7	172	458	168	441	3.21e-92	296
MsaG040218	AT1G75410.2	53.608	291	114	7	172	458	168	441	3.21e-92	296

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Find 173 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTACTTACGGGTGG+AGG	0.547866	7:-97922166	None:intergenic
AAACAATCTCAAAGCAGTTT+CGG	0.458580	7:+97921910	MsaT040218.1:CDS
AAACCACAACCTCCATTTGA+TGG	0.467737	7:-97921827	None:intergenic
AAAGCTACAAATAAGAGTTT+GGG	0.393739	7:+97921963	MsaT040218.1:CDS
AAATAAGAGTTTGGGTGAAG+AGG	0.522513	7:+97921971	MsaT040218.1:CDS
AAATGAACTAAATGGATCTG+AGG	0.605958	7:+97922685	MsaT040218.1:CDS
AACAAGTGTTTGAAGTCCGT+CGG	0.592444	7:-97919269	None:intergenic
AACAGGGCTTACTAGGAGTC+AGG	0.508298	7:+97922488	MsaT040218.1:CDS
AACCAAACAAACTTCATTGG+TGG	0.508445	7:+97923091	MsaT040218.1:CDS
AACCTACCAATATCACCAAT+TGG	0.390271	7:-97923127	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	97919211	97923396	97919211	ID=MsaG040218
Chr7	mRNA	97919211	97923396	97919211	ID=MsaT040218.1;Parent=MsaG040218
Chr7	exon	97919211	97919987	97919211	ID=MsaT040218.1.exon1;Parent=MsaT040218.1
Chr7	CDS	97919211	97919987	97919211	ID=cds.MsaT040218.1;Parent=MsaT040218.1
Chr7	exon	97921801	97922174	97921801	ID=MsaT040218.1.exon2;Parent=MsaT040218.1
Chr7	CDS	97921801	97922174	97921801	ID=cds.MsaT040218.1;Parent=MsaT040218.1
Chr7	exon	97922449	97922509	97922449	ID=MsaT040218.1.exon3;Parent=MsaT040218.1
Chr7	CDS	97922449	97922509	97922449	ID=cds.MsaT040218.1;Parent=MsaT040218.1
Chr7	exon	97922605	97923396	97922605	ID=MsaT040218.1.exon4;Parent=MsaT040218.1
Chr7	CDS	97922605	97923396	97922605	ID=cds.MsaT040218.1;Parent=MsaT040218.1

Gene Sequence

>MsaT040218.1

ATGGCAACGTACTATCATGGTGGTAATTCTGAAATCCAATCAAGTGGTGGCGGCGGCGCCGACGGACTTCAAACACTTGTTCTCATGAATCCAGGCTATATACAATATTCTGATGCTACACAGCAACAACAAGCTCAACAACCTTCTCATGCCGCTGCCGGTAACTATGTTTTCCTCAACTCTACAGCTGCTGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACACTCAACAATTCGTTGGCATACCTCTTAACCACCAACAACACCAAATCCACGCGCACCATGACGTTGTACCTTCTTTGCATGGCTTCCTTCCACACATGCAGTACAATCAATGGAACACAATTGACCCAAACACGGCGGCGCGTGATACACCACGCGCTCAACAAGGACTGTCTCTTAGTCTCTCTTCACAGCCGGCAAGATTCGTTTCTATGTCTGGTGGTTCGCCGTCTCCGGCTTCTGGTGTTACAACGAATAATAACAATGGGAATCCGGGGATTCAGATTCTGAGTTCAAAGTATTTAAGGGCAGCACATGAGCTTTTAGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAATTGGGAAAGAAGAGTGGTGGTGGAATGAGCAAGGTGAATATTGGAGAATCATCAGGAGTTGGTAGTGGAGGAGATGGATCAATAATTGGTGGTGGGGAGGGAAGTGGAAAACGTAGCTCTGAGCTATCAACAGCTGAAAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCACCATCAAATGGAGGTTGTGGTTTCCTCGTTCGAACAAGCCGCCGGAATCGGTTCAGCTAGGACATACACTGCCCTTGCACTACAAACAATCTCAAAGCAGTTTCGGTGTTTGAAAGATGCAATAACAGGACAAATTAAAGCTACAAATAAGAGTTTGGGTGAAGAGGATTGCTTTGGAGGTAAAATTGAAGGTTCAAGGCTCAAATATGTTGATCATCAACTACGTCAACAACGTGCTCTACAACAATTGGGAATGATCCAGCATAACGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTCCACCCCTATCCAAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTCAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACGTGGAAGAAATGAAGGAAAATGAACTAAATGGATCTGAGGATAAACAAAGTAAGAGCAATGAAGATTCTTCAATGAAAATAACATCCTCTCAAGAAAAAGCTCTCACCTCTGAAACAGAACCTAAAGGTTACAATTCCACACAAGACATTTCCAAAAGCCATGAAACTCCAATAATTTCTGTTTCTAGACCACAATCATCACCACTTGTTGGAAATGTTAGAAACAATTCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGGATACCACAAGGAAGTCCTAAAAAACCAAGGAACCATGAACTTATGCATAACCCTAATAGTTTCATTGATGTTAAGCACAATGAGGCAAATAATGAGGAACTATCAATGAAATTTGGTGATGAGAGACAAAATAGAGATGGTTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGATTTGGACAATACCCAATTGGTGATATTGGTAGGTTTGACTCAGAACAATTCACACCAAGGTTTTCAAGTAATAATGTTTCACTCACTCTTGGTCTTGATTCAATACAAGGAAATCATCAAACATTTCTACCAAACCAAAACATTCAACTAGGAAGAAGCATTGATATAAGTGAACCAAATGAGTTTGGTTCTATAAACACTTCCTCTCCTCAATATGAAAGTATCAACATGCAAAACCCAAAGAGGTTTGCTGCACAGTTGTTACCAGATTTTGTGTCCTAA

Protein sequence

>MsaT040218.1

MATYYHGGNSEIQSSGGGGADGLQTLVLMNPGYIQYSDATQQQQAQQPSHAAAGNYVFLNSTAAENNSFSPHAPPSNTQQFVGIPLNHQQHQIHAHHDVVPSLHGFLPHMQYNQWNTIDPNTAARDTPRAQQGLSLSLSSQPARFVSMSGGSPSPASGVTTNNNNGNPGIQILSSKYLRAAHELLEEVVNVNSGVELGKKSGGGMSKVNIGESSGVGSGGDGSIIGGGEGSGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENELNGSEDKQSKSNEDSSMKITSSQEKALTSETEPKGYNSTQDISKSHETPIISVSRPQSSPLVGNVRNNSGFSFIGSSELEGIPQGSPKKPRNHELMHNPNSFIDVKHNEANNEELSMKFGDERQNRDGYSFMGNQTNFIGGFGQYPIGDIGRFDSEQFTPRFSSNNVSLTLGLDSIQGNHQTFLPNQNIQLGRSIDISEPNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVS*