AlfalfaGEDB | MsaG040225

M. sativa ssp. caerulea / MsaG040225

KEGG: K08064
GO: GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040225	XP_013450229.1	96.707	334	10	1	1	334	1	333	0.0	672

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040225	sp\|Q8LFU0\|NFYAA_ARATH	45.724	304	112	12	33	332	13	267	1.11e-66	213

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040225	tr\|I3TAV2\|I3TAV2_MEDTR	96.707	334	10	1	1	334	1	333	0.0	672

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040225	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG040165	MsaG040225	0.869426	6.339307e-66	7.171642e-63

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040225	MtrunA17_Chr7g0267581	96.707	334	10	1	1	334	1	333	0.0	672
MsaG040225	MtrunA17_Chr1g0177091	70.393	331	89	6	1	327	1	326	4.08e-156	440
MsaG040225	MtrunA17_Chr8g0352251	47.682	151	58	7	99	231	72	219	8.82e-31	118
MsaG040225	MtrunA17_Chr2g0300261	49.296	142	51	7	115	236	10	150	3.77e-29	112
MsaG040225	MtrunA17_Chr2g0292411	51.923	104	48	1	135	236	80	183	3.27e-28	108
MsaG040225	MtrunA17_Chr3g0103391	48.031	127	51	5	106	221	104	226	3.46e-28	111
MsaG040225	MtrunA17_Chr8g0343451	47.458	118	47	4	122	226	110	225	1.73e-25	104
MsaG040225	MtrunA17_Chr2g0329811	51.000	100	40	3	136	226	147	246	7.72e-24	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040225	AT5G06510.1	45.724	304	112	12	33	332	13	267	1.13e-67	213
MsaG040225	AT5G06510.5	45.724	304	112	12	33	332	13	267	1.13e-67	213
MsaG040225	AT5G06510.2	45.724	304	112	12	33	332	13	267	1.13e-67	213
MsaG040225	AT5G06510.6	45.724	304	112	12	33	332	13	267	1.13e-67	213
MsaG040225	AT3G05690.1	44.410	322	112	18	34	333	18	294	8.74e-61	196
MsaG040225	AT5G06510.3	48.963	241	78	10	96	332	19	218	1.74e-60	193
MsaG040225	AT3G05690.2	44.340	318	118	18	34	333	55	331	5.10e-60	196
MsaG040225	AT5G06510.4	49.268	205	65	9	132	332	3	172	1.04e-49	164
MsaG040225	AT5G06510.7	49.268	205	65	9	132	332	3	172	1.04e-49	164
MsaG040225	AT2G34720.1	50.820	122	46	4	125	233	44	164	1.39e-32	120

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Find 92 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACACACTTGAATTTG+AGG	0.417906	7:+98044188	None:intergenic
AAACGACCACCACATCCTCT+CGG	0.633569	7:+98043286	None:intergenic
AAATTACAAACCTGGAAAGA+TGG	0.499330	7:+98045520	None:intergenic
AACACAAAGAAATCTGCCAA+TGG	0.628709	7:-98043259	MsaT040225.1:CDS
AACTCTTCAAAGGAAACTAA+TGG	0.364196	7:-98043133	MsaT040225.1:CDS
AAGAAATCTGCCAATGGAGA+TGG	0.548636	7:-98043253	MsaT040225.1:CDS
AAGTTCCAATATCAGATTCA+AGG	0.429838	7:+98043158	None:intergenic
AATCACTTTACCATCTTTCC+AGG	0.307723	7:-98045530	MsaT040225.1:intron
AATCCCAGCTCAAAGCGATT+CGG	0.417399	7:+98044420	None:intergenic
AATCGCTTTGAGCTGGGATT+TGG	0.348352	7:-98044417	MsaT040225.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	98042943	98045807	98042943	ID=MsaG040225
Chr7	mRNA	98042943	98045807	98042943	ID=MsaT040225.1;Parent=MsaG040225
Chr7	exon	98042943	98043350	98042943	ID=MsaT040225.1.exon5;Parent=MsaT040225.1
Chr7	CDS	98042943	98043350	98042943	ID=cds.MsaT040225.1;Parent=MsaT040225.1
Chr7	exon	98043923	98044063	98043923	ID=MsaT040225.1.exon4;Parent=MsaT040225.1
Chr7	CDS	98043923	98044063	98043923	ID=cds.MsaT040225.1;Parent=MsaT040225.1
Chr7	exon	98044199	98044267	98044199	ID=MsaT040225.1.exon3;Parent=MsaT040225.1
Chr7	CDS	98044199	98044267	98044199	ID=cds.MsaT040225.1;Parent=MsaT040225.1
Chr7	exon	98044407	98044516	98044407	ID=MsaT040225.1.exon2;Parent=MsaT040225.1
Chr7	CDS	98044407	98044516	98044407	ID=cds.MsaT040225.1;Parent=MsaT040225.1
Chr7	exon	98045531	98045807	98045531	ID=MsaT040225.1.exon1;Parent=MsaT040225.1
Chr7	CDS	98045531	98045807	98045531	ID=cds.MsaT040225.1;Parent=MsaT040225.1

Gene Sequence

>MsaT040225.1

ATGGCTATGCAAACTGTTTATCTGAAAGAACATGATGGAATTGCACACAATTTTGTGGGGCAATTATCATCTGGTACTAATAATTCAGCTGCTGCACCATGGTGGAGTAGTTTTGGATCTCAATCCCTTTATGGAGAGTCTGGTGGCCAAATCAAATCCTTTTCATTGGAGCCACCTATGTCTGCTGTTGACCAACTTGCTGCAACTAAGCAATCTGCTAGAGGAACTGAACATGTGTTTGGGAAAGGGCATACCAATCACTTTACCATCTTTCCAGATGATTTTAAAATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCATTGCAGTCGGCAGTCCCTGATACCCCGAATCGCTTTGAGCTGGGATTTGGTCAACCTATGATCTGTACAAAGTATCCTTATGCAGATCAATTTTATGGACTCATCTCAACCTATGGACCTCAAATTCAAGGACGTATAATGCTGCCCCTTAACATGACATCTGATGATGGACCTATTTATGTGAATGCTAAGCAGTACAATGGAATCATTAGACGTCGGCAGTCCCGCGCCAAAGCTGTACTTGGTCACAAATTGATTAAACGTAACAAGCCCTACATGCACGAGTCACGCCATCTCCATGCAATGCGGCGACCGAGAGGATGTGGTGGTCGTTTCTTAAACACAAAGAAATCTGCCAATGGAGATGGTAAAACTGGAAGTAAAGTGCATAAATTCGGCAGTCAACAATTGCAGTTCAGTGGTTCTCAGAGTTCTGAACTCCTTGAATCTGATATTGGAACTTTAAACTCTTCAAAGGAAACTAATGGAAGCAGCCCAAATATTTCTGGATCAGAGGTGACTAGTTTGTATTCGAGGGGAAATCTTGACAGCTTTACCGTCAATCACCTTGGATCTTCTGTCCACTCTATGGCAGACATGATCGATGGTGGGCGTGGTGTTATCATGCCGACCAAATGGGTAACAGCAGCTGGCAACTGCTGTAACCTTAAAGCTTGA

Protein sequence

>MsaT040225.1

MAMQTVYLKEHDGIAHNFVGQLSSGTNNSAAAPWWSSFGSQSLYGESGGQIKSFSLEPPMSAVDQLAATKQSARGTEHVFGKGHTNHFTIFPDDFKMSGDAQKPHTAISLQSAVPDTPNRFELGFGQPMICTKYPYADQFYGLISTYGPQIQGRIMLPLNMTSDDGPIYVNAKQYNGIIRRRQSRAKAVLGHKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKKSANGDGKTGSKVHKFGSQQLQFSGSQSSELLESDIGTLNSSKETNGSSPNISGSEVTSLYSRGNLDSFTVNHLGSSVHSMADMIDGGRGVIMPTKWVTAAGNCCNLKA*