Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040225 | XP_013450229.1 | 96.707 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 0.0 | 672 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040225 | sp|Q8LFU0|NFYAA_ARATH | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.11e-66 | 213 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040225 | tr|I3TAV2|I3TAV2_MEDTR | 96.707 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 0.0 | 672 |
Gene ID | Type | Classification |
---|---|---|
MsaG040225 | TF | NF-YA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG040165 | MsaG040225 | 0.869426 | 6.339307e-66 | 7.171642e-63 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040225 | MtrunA17_Chr7g0267581 | 96.707 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 0.0 | 672 |
MsaG040225 | MtrunA17_Chr1g0177091 | 70.393 | 331 | 89 | 6 | 1 | 327 | 1 | 326 | 4.08e-156 | 440 |
MsaG040225 | MtrunA17_Chr8g0352251 | 47.682 | 151 | 58 | 7 | 99 | 231 | 72 | 219 | 8.82e-31 | 118 |
MsaG040225 | MtrunA17_Chr2g0300261 | 49.296 | 142 | 51 | 7 | 115 | 236 | 10 | 150 | 3.77e-29 | 112 |
MsaG040225 | MtrunA17_Chr2g0292411 | 51.923 | 104 | 48 | 1 | 135 | 236 | 80 | 183 | 3.27e-28 | 108 |
MsaG040225 | MtrunA17_Chr3g0103391 | 48.031 | 127 | 51 | 5 | 106 | 221 | 104 | 226 | 3.46e-28 | 111 |
MsaG040225 | MtrunA17_Chr8g0343451 | 47.458 | 118 | 47 | 4 | 122 | 226 | 110 | 225 | 1.73e-25 | 104 |
MsaG040225 | MtrunA17_Chr2g0329811 | 51.000 | 100 | 40 | 3 | 136 | 226 | 147 | 246 | 7.72e-24 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040225 | AT5G06510.1 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.13e-67 | 213 |
MsaG040225 | AT5G06510.5 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.13e-67 | 213 |
MsaG040225 | AT5G06510.2 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.13e-67 | 213 |
MsaG040225 | AT5G06510.6 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.13e-67 | 213 |
MsaG040225 | AT3G05690.1 | 44.410 | 322 | 112 | 18 | 34 | 333 | 18 | 294 | 8.74e-61 | 196 |
MsaG040225 | AT5G06510.3 | 48.963 | 241 | 78 | 10 | 96 | 332 | 19 | 218 | 1.74e-60 | 193 |
MsaG040225 | AT3G05690.2 | 44.340 | 318 | 118 | 18 | 34 | 333 | 55 | 331 | 5.10e-60 | 196 |
MsaG040225 | AT5G06510.4 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.04e-49 | 164 |
MsaG040225 | AT5G06510.7 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.04e-49 | 164 |
MsaG040225 | AT2G34720.1 | 50.820 | 122 | 46 | 4 | 125 | 233 | 44 | 164 | 1.39e-32 | 120 |
MsaG040225 | AT1G30500.1 | 53.846 | 104 | 42 | 1 | 129 | 226 | 53 | 156 | 5.05e-31 | 115 |
MsaG040225 | AT2G34720.2 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 8.10e-31 | 114 |
MsaG040225 | AT2G34720.3 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 8.10e-31 | 114 |
MsaG040225 | AT1G30500.2 | 51.852 | 108 | 42 | 2 | 129 | 226 | 53 | 160 | 2.54e-30 | 114 |
MsaG040225 | AT1G72830.1 | 54.717 | 106 | 34 | 3 | 134 | 226 | 135 | 239 | 4.33e-29 | 114 |
MsaG040225 | AT5G12840.5 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.26e-29 | 113 |
MsaG040225 | AT5G12840.3 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.26e-29 | 113 |
MsaG040225 | AT5G12840.1 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.26e-29 | 113 |
MsaG040225 | AT5G12840.4 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.31e-29 | 113 |
MsaG040225 | AT5G12840.2 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.31e-29 | 113 |
MsaG040225 | AT1G72830.2 | 54.206 | 107 | 34 | 4 | 134 | 226 | 135 | 240 | 1.56e-27 | 110 |
MsaG040225 | AT3G20910.1 | 43.571 | 140 | 66 | 3 | 135 | 263 | 126 | 263 | 9.51e-26 | 105 |
MsaG040225 | AT1G17590.3 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.05e-25 | 105 |
MsaG040225 | AT1G17590.2 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.05e-25 | 105 |
MsaG040225 | AT1G17590.4 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.05e-25 | 105 |
MsaG040225 | AT1G17590.1 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.05e-25 | 105 |
MsaG040225 | AT3G14020.2 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.20e-25 | 104 |
MsaG040225 | AT3G14020.1 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.20e-25 | 104 |
MsaG040225 | AT1G54160.1 | 59.211 | 76 | 30 | 1 | 151 | 226 | 164 | 238 | 1.66e-23 | 99.0 |
MsaG040225 | AT1G72830.3 | 49.474 | 95 | 31 | 2 | 134 | 226 | 135 | 214 | 8.70e-20 | 88.6 |
Find 92 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTACAGAATCAAGCTTTA+AGG | 0.131683 | 7:+98042933 | None:intergenic |
TTTGGATCTCAATCCCTTTA+TGG | 0.173015 | 7:-98045674 | MsaT040225.1:CDS |
ACCTCTGATCCAGAAATATT+TGG | 0.179271 | 7:+98043103 | None:intergenic |
GGAAGCAGCCCAAATATTTC+TGG | 0.235006 | 7:-98043112 | MsaT040225.1:CDS |
TCAAAGCGATTCGGGGTATC+AGG | 0.251958 | 7:+98044429 | None:intergenic |
GAACTCCTTGAATCTGATAT+TGG | 0.275281 | 7:-98043163 | MsaT040225.1:CDS |
AATCACTTTACCATCTTTCC+AGG | 0.307723 | 7:-98045530 | MsaT040225.1:intron |
GCACCATGGTGGAGTAGTTT+TGG | 0.325147 | 7:-98045692 | MsaT040225.1:CDS |
ATCCCAGCTCAAAGCGATTC+GGG | 0.326860 | 7:+98044421 | None:intergenic |
AATCGCTTTGAGCTGGGATT+TGG | 0.348352 | 7:-98044417 | MsaT040225.1:CDS |
CCAATGAAAAGGATTTGATT+TGG | 0.354007 | 7:+98045639 | None:intergenic |
GCCAATGGAGATGGTAAAAC+TGG | 0.357725 | 7:-98043244 | MsaT040225.1:CDS |
GCCAGCTGCTGTTACCCATT+TGG | 0.363280 | 7:+98042967 | None:intergenic |
AACTCTTCAAAGGAAACTAA+TGG | 0.364196 | 7:-98043133 | MsaT040225.1:CDS |
GGCCACCAGACTCTCCATAA+AGG | 0.392293 | 7:+98045660 | None:intergenic |
TGGATCTTCTGTCCACTCTA+TGG | 0.396364 | 7:-98043029 | MsaT040225.1:CDS |
GCCACCAGACTCTCCATAAA+GGG | 0.396734 | 7:+98045661 | None:intergenic |
GACTGCCGACTGCAATGATA+TGG | 0.407221 | 7:+98044452 | None:intergenic |
AATCCCAGCTCAAAGCGATT+CGG | 0.417399 | 7:+98044420 | None:intergenic |
CATCATCAGATGTCATGTTA+AGG | 0.417508 | 7:+98044024 | None:intergenic |
AAAAGACACACTTGAATTTG+AGG | 0.417906 | 7:+98044188 | None:intergenic |
CCTCTGATCCAGAAATATTT+GGG | 0.418372 | 7:+98043104 | None:intergenic |
AGAGGAACTGAACATGTGTT+TGG | 0.420524 | 7:-98045566 | MsaT040225.1:CDS |
CAATCCCTTTATGGAGAGTC+TGG | 0.421990 | 7:-98045665 | MsaT040225.1:CDS |
GTGTTATCATGCCGACCAAA+TGG | 0.422418 | 7:-98042982 | MsaT040225.1:CDS |
AAGTTCCAATATCAGATTCA+AGG | 0.429838 | 7:+98043158 | None:intergenic |
TATGGACTCATCTCAACCTA+TGG | 0.435805 | 7:-98044212 | MsaT040225.1:CDS |
GGAAGTAAAGTGCATAAATT+CGG | 0.437987 | 7:-98043223 | MsaT040225.1:CDS |
TTTGTGACCAAGTACAGCTT+TGG | 0.439346 | 7:+98043941 | None:intergenic |
CTCTCGGTCGCCGCATTGCA+TGG | 0.444185 | 7:+98043302 | None:intergenic |
TTTGTGGGGCAATTATCATC+TGG | 0.452637 | 7:-98045734 | MsaT040225.1:CDS |
ATCATCAGATGTCATGTTAA+GGG | 0.456801 | 7:+98044025 | None:intergenic |
TGGAAAGATGGTAAAGTGAT+TGG | 0.466352 | 7:+98045532 | None:intergenic |
TGCTTAGCATTCACATAAAT+AGG | 0.466962 | 7:+98043999 | None:intergenic |
GAGGAACTGAACATGTGTTT+GGG | 0.473124 | 7:-98045565 | MsaT040225.1:CDS |
CTGAACATGTGTTTGGGAAA+GGG | 0.489888 | 7:-98045559 | MsaT040225.1:CDS |
TCCCGCGCCAAAGCTGTACT+TGG | 0.491975 | 7:-98043948 | MsaT040225.1:CDS |
ACCCCGAATCGCTTTGAGCT+GGG | 0.493523 | 7:-98044423 | MsaT040225.1:CDS |
TACCCCGAATCGCTTTGAGC+TGG | 0.494554 | 7:-98044424 | MsaT040225.1:CDS |
CCATAAAATTGATCTGCATA+AGG | 0.496364 | 7:+98044230 | None:intergenic |
AAATTACAAACCTGGAAAGA+TGG | 0.499330 | 7:+98045520 | None:intergenic |
ACCAAATGGGTAACAGCAGC+TGG | 0.501310 | 7:-98042968 | MsaT040225.1:CDS |
CATAGGTGGCTCCAATGAAA+AGG | 0.504139 | 7:+98045628 | None:intergenic |
CACTTGAATTTGAGGTCCAT+AGG | 0.510920 | 7:+98044196 | None:intergenic |
TGGAACTTTAAACTCTTCAA+AGG | 0.511753 | 7:-98043143 | MsaT040225.1:CDS |
AGGTGACTAGTTTGTATTCG+AGG | 0.519014 | 7:-98043084 | MsaT040225.1:CDS |
TGGCGTGACTCGTGCATGTA+GGG | 0.520062 | 7:+98043328 | None:intergenic |
GCTGGGATTTGGTCAACCTA+TGG | 0.529602 | 7:-98044406 | MsaT040225.1:intron |
ATGGCGTGACTCGTGCATGT+AGG | 0.531463 | 7:+98043327 | None:intergenic |
TGTTATCATGCCGACCAAAT+GGG | 0.536297 | 7:-98042981 | MsaT040225.1:CDS |
TGCAATGATATGGCTGTATG+AGG | 0.536424 | 7:+98044462 | None:intergenic |
AGCTTTACCGTCAATCACCT+TGG | 0.539572 | 7:-98043049 | MsaT040225.1:CDS |
CTTAACATGACATCTGATGA+TGG | 0.543590 | 7:-98044023 | MsaT040225.1:CDS |
GGTGACTAGTTTGTATTCGA+GGG | 0.543743 | 7:-98043083 | MsaT040225.1:CDS |
ACTGAACATGTGTTTGGGAA+AGG | 0.545969 | 7:-98045560 | MsaT040225.1:CDS |
AAGAAATCTGCCAATGGAGA+TGG | 0.548636 | 7:-98043253 | MsaT040225.1:CDS |
ATGCGGCGACCGAGAGGATG+TGG | 0.549647 | 7:-98043295 | MsaT040225.1:CDS |
CCCAAATATTTCTGGATCAG+AGG | 0.555972 | 7:-98043104 | MsaT040225.1:CDS |
ATTGCTTAGTTGCAGCAAGT+TGG | 0.559108 | 7:+98045594 | None:intergenic |
GACATGATCGATGGTGGGCG+TGG | 0.559837 | 7:-98043004 | MsaT040225.1:CDS |
ACCAAGTACAGCTTTGGCGC+GGG | 0.561918 | 7:+98043947 | None:intergenic |
AGAAGATCCAAGGTGATTGA+CGG | 0.562013 | 7:+98043042 | None:intergenic |
GCTGCTGTTACCCATTTGGT+CGG | 0.574530 | 7:+98042971 | None:intergenic |
ATGGCAGACATGATCGATGG+TGG | 0.576851 | 7:-98043010 | MsaT040225.1:CDS |
GTCGCCGCATTGCATGGAGA+TGG | 0.577807 | 7:+98043308 | None:intergenic |
CAAAGCGATTCGGGGTATCA+GGG | 0.579590 | 7:+98044430 | None:intergenic |
GTTTATCTGAAAGAACATGA+TGG | 0.580817 | 7:-98045770 | MsaT040225.1:CDS |
CAAATTGATTAAACGTAACA+AGG | 0.583050 | 7:-98043922 | MsaT040225.1:intron |
CGATCATGTCTGCCATAGAG+TGG | 0.586528 | 7:+98043017 | None:intergenic |
TCATCAGATGTCATGTTAAG+GGG | 0.601001 | 7:+98044026 | None:intergenic |
AGTTGGTCAACAGCAGACAT+AGG | 0.601111 | 7:+98045611 | None:intergenic |
GACCAAGTACAGCTTTGGCG+CGG | 0.601436 | 7:+98043946 | None:intergenic |
TACAGCCATATCATTGCAGT+CGG | 0.605390 | 7:-98044457 | MsaT040225.1:CDS |
GTGAATGCTAAGCAGTACAA+TGG | 0.608645 | 7:-98043990 | MsaT040225.1:CDS |
AGTCAACAATTGCAGTTCAG+TGG | 0.610037 | 7:-98043199 | MsaT040225.1:CDS |
GCAACTAAGCAATCTGCTAG+AGG | 0.619360 | 7:-98045584 | MsaT040225.1:CDS |
TGGCAGACATGATCGATGGT+GGG | 0.625708 | 7:-98043009 | MsaT040225.1:CDS |
TAGAGTGGACAGAAGATCCA+AGG | 0.626448 | 7:+98043032 | None:intergenic |
CATGCAATGCGGCGACCGAG+AGG | 0.626832 | 7:-98043301 | MsaT040225.1:CDS |
AACACAAAGAAATCTGCCAA+TGG | 0.628709 | 7:-98043259 | MsaT040225.1:CDS |
AAACGACCACCACATCCTCT+CGG | 0.633569 | 7:+98043286 | None:intergenic |
GTGACTAGTTTGTATTCGAG+GGG | 0.634644 | 7:-98043082 | MsaT040225.1:CDS |
TCCCTTTATGGAGAGTCTGG+TGG | 0.654622 | 7:-98045662 | MsaT040225.1:CDS |
TCCCAGCTCAAAGCGATTCG+GGG | 0.658985 | 7:+98044422 | None:intergenic |
TCTATGGCAGACATGATCGA+TGG | 0.660420 | 7:-98043013 | MsaT040225.1:CDS |
CGGCGACCGAGAGGATGTGG+TGG | 0.666958 | 7:-98043292 | MsaT040225.1:CDS |
ATTCAGCTGCTGCACCATGG+TGG | 0.677437 | 7:-98045703 | MsaT040225.1:CDS |
TGGTCAACAGCAGACATAGG+TGG | 0.678879 | 7:+98045614 | None:intergenic |
CACGCCATCTCCATGCAATG+CGG | 0.685964 | 7:-98043312 | MsaT040225.1:CDS |
ATAATTCAGCTGCTGCACCA+TGG | 0.686059 | 7:-98045706 | MsaT040225.1:CDS |
ACAATGGAATCATTAGACGT+CGG | 0.715449 | 7:-98043974 | MsaT040225.1:CDS |
GATCCAAAACTACTCCACCA+TGG | 0.743317 | 7:+98045689 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 98042943 | 98045807 | 98042943 | ID=MsaG040225 |
Chr7 | mRNA | 98042943 | 98045807 | 98042943 | ID=MsaT040225.1;Parent=MsaG040225 |
Chr7 | exon | 98042943 | 98043350 | 98042943 | ID=MsaT040225.1.exon5;Parent=MsaT040225.1 |
Chr7 | CDS | 98042943 | 98043350 | 98042943 | ID=cds.MsaT040225.1;Parent=MsaT040225.1 |
Chr7 | exon | 98043923 | 98044063 | 98043923 | ID=MsaT040225.1.exon4;Parent=MsaT040225.1 |
Chr7 | CDS | 98043923 | 98044063 | 98043923 | ID=cds.MsaT040225.1;Parent=MsaT040225.1 |
Chr7 | exon | 98044199 | 98044267 | 98044199 | ID=MsaT040225.1.exon3;Parent=MsaT040225.1 |
Chr7 | CDS | 98044199 | 98044267 | 98044199 | ID=cds.MsaT040225.1;Parent=MsaT040225.1 |
Chr7 | exon | 98044407 | 98044516 | 98044407 | ID=MsaT040225.1.exon2;Parent=MsaT040225.1 |
Chr7 | CDS | 98044407 | 98044516 | 98044407 | ID=cds.MsaT040225.1;Parent=MsaT040225.1 |
Chr7 | exon | 98045531 | 98045807 | 98045531 | ID=MsaT040225.1.exon1;Parent=MsaT040225.1 |
Chr7 | CDS | 98045531 | 98045807 | 98045531 | ID=cds.MsaT040225.1;Parent=MsaT040225.1 |
Gene Sequence |
Protein sequence |