AlfalfaGEDB | MsaG040256

M. sativa ssp. caerulea / MsaG040256

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040256	XP_039685924.1	46.296	108	33	3	1	85	1	106	3.30e-15	79.0

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040256	sp\|Q9SSW2\|AZF2_ARATH	65.854	41	14	0	46	86	90	130	2.01e-11	61.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040256	tr\|G7IEV2\|G7IEV2_MEDTR	46.296	108	33	3	1	85	1	106	1.58e-15	79.0

TFs/TRs:

Gene ID	Type	Classification
MsaG040256	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040256	MtrunA17_Chr1g0207451	46.296	108	33	3	1	85	1	106	3.04e-19	79.0
MsaG040256	MtrunA17_Chr3g0134711	50.000	70	22	2	20	89	57	113	7.09e-13	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040256	AT3G19580.1	65.854	41	14	0	46	86	90	130	2.04e-12	61.2
MsaG040256	AT3G19580.2	65.854	41	14	0	46	86	90	130	2.04e-12	61.2

Find 11 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTTTGAATTCTTCTCCAAC+AGG	0.423551	7:+98415266	MsaT040256.1:CDS
TGATGAAGATTTACGGTGGC+TGG	0.425019	7:-98415492	None:intergenic
CCACCAAGTGCTTGATAAGA+TGG	0.454419	7:-98415461	None:intergenic
GTGAAGATGATGATTCGATT+TGG	0.467194	7:-98415361	None:intergenic
CACTTGTGGTTCAACTTCAC+TGG	0.486792	7:-98415416	None:intergenic
CCATCTTATCAAGCACTTGG+TGG	0.494016	7:+98415461	MsaT040256.1:CDS
TGTCGCAAACACTGCACTTG+TGG	0.505114	7:-98415430	None:intergenic
TGGTTCAACTTCACTGGTGA+TGG	0.505953	7:-98415410	None:intergenic
TTTCCATCTTATCAAGCACT+TGG	0.542353	7:+98415458	MsaT040256.1:CDS
GGTGATGGCGGCGACTGCAA+CGG	0.597054	7:-98415395	None:intergenic
TTCAACTTCACTGGTGATGG+CGG	0.622785	7:-98415407	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	98415248	98416718	98415248	ID=MsaG040256
Chr7	mRNA	98415248	98416718	98415248	ID=MsaT040256.1;Parent=MsaG040256
Chr7	exon	98415248	98415500	98415248	ID=MsaT040256.1.exon1;Parent=MsaT040256.1
Chr7	CDS	98415248	98415500	98415248	ID=cds.MsaT040256.1;Parent=MsaT040256.1
Chr7	exon	98416678	98416718	98416678	ID=MsaT040256.1.exon2;Parent=MsaT040256.1
Chr7	CDS	98416678	98416718	98416678	ID=cds.MsaT040256.1;Parent=MsaT040256.1

Gene Sequence	>MsaT040256.1 ATGGCTTTAGAGTTGCAAGCTTTGAATTCTTCTCCAACAGGAGCTACTAACGAAAAAATCATGCTCTCACAAAGCAACACCAATGAAAAAATCAACATCTCTGAATCTCATCACCAAATCGAATCATCATCTTCACAGCAACAACAACCGTTGCAGTCGCCGCCATCACCAGTGAAGTTGAACCACAAGTGCAGTGTTTGCGACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCACAAAGCCAGCCACCAAATGATGGTTATAATTATCCGCAAAAAAGTTGTTGTCTAA
Protein sequence	>MsaT040256.1 MALELQALNSSPTGATNEKIMLSQSNTNEKINISESHHQIESSSSQQQQPLQSPPSPVKLNHKCSVCDKAFPSYQALGGHKASHQMMVIIIRKKVVV*