AlfalfaGEDB | MsaG040318

M. sativa ssp. caerulea / MsaG040318

KEGG: -
GO: -
PFAM: PF12171.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040318	RHN48923.1	97.859	467	9	1	1	466	24	490	0.0	957

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040318	sp\|Q9SCQ6\|IDD2_ARATH	54.180	323	118	6	9	310	44	357	4.42e-105	323

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040318	tr\|A0A396H847\|A0A396H847_MEDTR	97.859	467	9	1	1	466	24	490	0.0	957

TFs/TRs:

Gene ID	Type	Classification
MsaG040318	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001021	MsaG040318	0.824656	1.271237e-53	3.167789e-51
MsaG001022	MsaG040318	0.826859	3.836071e-54	1.016038e-51
MsaG001286	MsaG040318	0.827183	3.212781e-54	8.586517e-52
MsaG001434	MsaG040318	0.816467	9.459445e-52	1.897935e-49
MsaG001558	MsaG040318	0.837540	8.977199e-57	3.246461e-54
MsaG001726	MsaG040318	0.800315	2.552866e-48	3.476204e-46
MsaG003257	MsaG040318	0.805357	2.346898e-49	3.587697e-47
MsaG003865	MsaG040318	0.841554	8.220618e-58	3.370379e-55
MsaG003937	MsaG040318	0.831001	3.851451e-55	1.147065e-52
MsaG004163	MsaG040318	0.838806	4.252692e-57	1.599379e-54
MsaG004368	MsaG040318	0.805858	1.844605e-49	2.853000e-47
MsaG005055	MsaG040318	0.803276	6.338283e-49	9.232980e-47
MsaG005058	MsaG040318	0.845811	6.043653e-59	2.844560e-56
MsaG005137	MsaG040318	0.808557	4.975348e-50	8.206016e-48
MsaG005201	MsaG040318	0.808610	4.848042e-50	8.006178e-48
MsaG005623	MsaG040318	0.830327	5.622677e-55	1.642545e-52
MsaG005632	MsaG040318	0.815613	1.464409e-51	2.875148e-49
MsaG006004	MsaG040318	0.806591	1.295132e-49	2.038237e-47
MsaG007206	MsaG040318	0.832415	1.732461e-55	5.376225e-53
MsaG007254	MsaG040318	0.800498	2.343758e-48	3.204689e-46
MsaG007351	MsaG040318	0.829645	8.230294e-55	2.357902e-52
MsaG007912	MsaG040318	0.814077	3.194471e-51	6.033501e-49
MsaG008631	MsaG040318	0.801657	1.361422e-48	1.910982e-46
MsaG008650	MsaG040318	0.815016	1.984490e-51	3.837776e-49
MsaG010862	MsaG040318	0.815169	1.835555e-51	3.563467e-49
MsaG015448	MsaG040318	0.808093	6.242932e-50	1.018235e-47
MsaG017459	MsaG040318	0.802362	9.769193e-49	1.393505e-46
MsaG017532	MsaG040318	0.810642	1.782923e-50	3.092766e-48
MsaG018670	MsaG040318	0.802065	1.123798e-48	1.592136e-46
MsaG019571	MsaG040318	0.817766	4.842763e-52	1.004723e-49
MsaG020066	MsaG040318	0.810116	2.312688e-50	3.960530e-48
MsaG020424	MsaG040318	0.800498	2.343758e-48	3.204689e-46
MsaG020892	MsaG040318	0.802347	9.835042e-49	1.402455e-46
MsaG021667	MsaG040318	0.808816	4.383354e-50	7.274906e-48
MsaG022866	MsaG040318	0.808943	4.119249e-50	6.857518e-48
MsaG022979	MsaG040318	0.802223	1.042793e-48	1.482712e-46
MsaG023100	MsaG040318	0.809199	3.633171e-50	6.085373e-48
MsaG023704	MsaG040318	0.833977	7.105808e-56	2.308426e-53
MsaG027193	MsaG040318	0.800135	2.775358e-48	3.763883e-46
MsaG027359	MsaG040318	0.801837	1.251148e-48	1.763385e-46
MsaG027423	MsaG040318	0.816718	8.312740e-52	1.678699e-49
MsaG028461	MsaG040318	0.810562	1.854594e-50	3.210846e-48
MsaG031786	MsaG040318	0.819237	2.255847e-52	4.862668e-50
MsaG031787	MsaG040318	0.813922	3.455884e-51	6.501997e-49
MsaG033776	MsaG040318	0.821549	6.690250e-53	1.533010e-50
MsaG034308	MsaG040318	0.810504	1.908833e-50	3.300083e-48
MsaG034459	MsaG040318	0.805610	2.078393e-49	3.195994e-47
MsaG034709	MsaG040318	0.809501	3.131084e-50	5.283270e-48
MsaG034880	MsaG040318	0.800521	2.318402e-48	3.171702e-46
MsaG035118	MsaG040318	0.810550	1.865916e-50	3.229502e-48
MsaG035666	MsaG040318	0.800534	2.304463e-48	3.153599e-46
MsaG035700	MsaG040318	0.813439	4.407826e-51	8.193266e-49
MsaG036551	MsaG040318	0.801385	1.547193e-48	2.158367e-46
MsaG036577	MsaG040318	0.820944	9.213576e-53	2.077684e-50
MsaG040318	MsaG042767	0.808341	5.531834e-50	9.076209e-48
MsaG040318	MsaG045424	0.806588	1.296561e-49	2.040372e-47
MsaG040318	MsaG045558	0.800951	1.895879e-48	2.618951e-46
MsaG040318	MsaG045881	0.808109	6.194075e-50	1.010649e-47
MsaG040318	MsaG046006	0.834275	5.987358e-56	1.962503e-53
MsaG040318	MsaG046558	0.817209	6.459080e-52	1.320997e-49
MsaG040318	MsaG046798	0.801574	1.415885e-48	1.983636e-46
MsaG040318	MsaG047044	0.812940	5.666636e-51	1.040222e-48
MsaG040318	MsaG047188	0.837872	7.387876e-57	2.698794e-54
MsaG040318	MsaG010582	0.801037	1.821549e-48	2.521119e-46
MsaG040318	MsaG014414	0.805285	2.430049e-49	3.708429e-47
MsaG040318	MsaG013856	0.819040	2.500316e-52	5.361871e-50
MsaG040318	MsaG013409	0.802729	8.213742e-49	1.181481e-46
MsaG040318	MsaG034467	0.810617	1.805113e-50	3.129349e-48
MsaG040318	MsaG032292	0.809566	3.033556e-50	5.126560e-48
MsaG040318	MsaG034539	0.807500	8.334103e-50	1.340071e-47
MsaG040318	MsaG036522	0.822495	4.050039e-53	9.517901e-51
MsaG040318	MsaG041376	0.804326	3.844375e-49	5.738074e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040318	MtrunA17_Chr7g0268961	97.859	467	9	1	1	466	24	490	0.0	957
MsaG040318	MtrunA17_Chr1g0191991	62.893	318	88	7	9	314	73	372	6.38e-123	368
MsaG040318	MtrunA17_Chr2g0330171	55.667	300	83	5	9	293	56	320	1.55e-106	324
MsaG040318	MtrunA17_Chr8g0342421	53.988	326	120	7	9	321	72	380	4.94e-104	319
MsaG040318	MtrunA17_Chr7g0263941	51.541	357	124	10	9	351	44	365	1.07e-102	312
MsaG040318	MtrunA17_Chr4g0040571	49.722	360	109	8	9	297	49	407	1.17e-102	315
MsaG040318	MtrunA17_Chr8g0373541	85.621	153	22	0	9	161	43	195	6.62e-102	314
MsaG040318	MtrunA17_Chr1g0185121	55.518	299	117	4	9	302	50	337	3.13e-101	310
MsaG040318	MtrunA17_Chr1g0181381	82.822	163	27	1	9	170	48	210	8.23e-101	310
MsaG040318	MtrunA17_Chr1g0210821	82.353	153	27	0	9	161	54	206	2.14e-98	306
MsaG040318	MtrunA17_Chr1g0163001	82.895	152	26	0	10	161	54	205	7.19e-97	301
MsaG040318	MtrunA17_Chr1g0199101	82.000	150	27	0	9	158	57	206	9.20e-97	301
MsaG040318	MtrunA17_Chr4g0029521	81.935	155	27	1	9	162	48	202	1.26e-96	300
MsaG040318	MtrunA17_Chr1g0162971	79.085	153	32	0	9	161	51	203	2.77e-95	295
MsaG040318	MtrunA17_Chr1g0151351	78.846	156	32	1	9	163	51	206	2.23e-93	290
MsaG040318	MtrunA17_Chr2g0326381	77.419	155	34	1	9	162	42	196	2.50e-92	286
MsaG040318	MtrunA17_Chr3g0141431	49.045	314	111	7	9	297	32	321	2.97e-89	278
MsaG040318	MtrunA17_Chr2g0324991	84.733	131	20	0	10	140	3	133	2.87e-83	253
MsaG040318	MtrunA17_Chr8g0375521	67.123	146	46	2	9	152	37	182	8.06e-69	225
MsaG040318	MtrunA17_Chr6g0479921	65.068	146	50	1	9	153	39	184	1.36e-68	226
MsaG040318	MtrunA17_Chr1g0200421	33.333	177	97	6	13	173	236	407	5.92e-24	104
MsaG040318	MtrunA17_Chr2g0320341	34.000	150	85	3	13	148	229	378	7.46e-23	100
MsaG040318	MtrunA17_Chr3g0123941	35.762	151	89	3	9	151	118	268	9.37e-23	99.0
MsaG040318	MtrunA17_Chr7g0258011	34.132	167	86	6	10	159	177	336	3.10e-21	94.7
MsaG040318	MtrunA17_Chr8g0382121	34.459	148	86	4	12	148	109	256	1.28e-20	92.4
MsaG040318	MtrunA17_Chr8g0352011	34.524	168	84	8	10	159	167	326	1.29e-20	92.8
MsaG040318	MtrunA17_Chr5g0422571	36.806	144	78	6	22	154	108	249	1.57e-20	91.7
MsaG040318	MtrunA17_Chr1g0173841	35.099	151	82	5	10	151	216	359	6.82e-20	91.3
MsaG040318	MtrunA17_Chr1g0198651	33.537	164	86	7	22	164	109	270	1.31e-19	89.0
MsaG040318	MtrunA17_Chr2g0328921	35.526	152	80	7	10	151	139	282	1.84e-19	89.0
MsaG040318	MtrunA17_Chr4g0026521	35.971	139	79	4	22	151	125	262	4.58e-19	87.4
MsaG040318	MtrunA17_Chr2g0321291	35.252	139	80	4	22	151	140	277	3.72e-18	85.1
MsaG040318	MtrunA17_Chr4g0053341	33.553	152	83	6	10	151	75	218	3.77e-18	83.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040318	AT3G50700.1	54.180	323	118	6	9	310	44	357	4.50e-106	323
MsaG040318	AT1G03840.1	85.806	155	22	0	9	163	51	205	4.04e-100	309
MsaG040318	AT1G03840.2	85.161	155	23	0	9	163	49	203	2.09e-99	307
MsaG040318	AT5G44160.2	52.077	313	112	7	8	291	7	310	7.13e-99	303
MsaG040318	AT5G66730.1	84.314	153	24	0	9	161	42	194	1.40e-98	305
MsaG040318	AT5G44160.1	52.244	312	111	7	9	291	47	349	3.16e-98	303
MsaG040318	AT1G55110.3	83.871	155	24	1	9	162	73	227	2.24e-97	300
MsaG040318	AT1G55110.1	83.871	155	24	1	9	162	73	227	2.24e-97	300
MsaG040318	AT1G55110.2	83.871	155	24	1	9	162	73	227	2.24e-97	300
MsaG040318	AT1G14580.1	81.699	153	28	0	9	161	63	215	2.83e-97	301
MsaG040318	AT1G14580.2	81.699	153	28	0	9	161	63	215	2.83e-97	301
MsaG040318	AT2G02070.2	81.529	157	29	0	12	168	65	221	5.73e-97	304
MsaG040318	AT2G02070.1	81.529	157	29	0	12	168	65	221	5.73e-97	304
MsaG040318	AT1G14580.3	81.699	153	28	0	9	161	77	229	6.19e-97	300
MsaG040318	AT2G02080.1	81.046	153	29	0	9	161	64	216	1.28e-96	300
MsaG040318	AT2G02080.4	81.046	153	29	0	9	161	64	216	1.28e-96	300
MsaG040318	AT2G02080.5	81.046	153	29	0	9	161	64	216	1.28e-96	300
MsaG040318	AT2G02080.3	81.046	153	29	0	9	161	64	216	1.28e-96	300
MsaG040318	AT5G03150.1	83.871	155	24	1	9	162	63	217	2.19e-96	300
MsaG040318	AT3G45260.2	81.818	154	27	1	9	161	49	202	3.38e-95	295
MsaG040318	AT3G45260.1	81.818	154	27	1	9	161	49	202	3.38e-95	295
MsaG040318	AT3G13810.6	83.766	154	24	1	9	161	61	214	1.70e-94	294
MsaG040318	AT3G13810.5	83.766	154	24	1	9	161	75	228	2.59e-94	294
MsaG040318	AT3G13810.4	83.766	154	24	1	9	161	80	233	3.08e-94	294
MsaG040318	AT3G13810.1	83.766	154	24	1	9	161	80	233	3.08e-94	294
MsaG040318	AT3G13810.3	81.875	160	27	2	4	161	61	220	6.61e-94	293
MsaG040318	AT3G13810.2	81.875	160	27	2	4	161	75	234	1.04e-93	293
MsaG040318	AT4G02670.1	75.439	171	38	2	9	175	63	233	1.32e-93	289
MsaG040318	AT4G02670.2	75.439	171	38	2	9	175	65	235	1.38e-93	289
MsaG040318	AT5G60470.1	75.926	162	36	2	3	161	37	198	5.12e-92	286
MsaG040318	AT5G60470.3	78.571	154	32	1	9	161	50	203	1.15e-91	286
MsaG040318	AT5G60470.2	78.571	154	32	1	9	161	54	207	1.17e-91	286
MsaG040318	AT2G02080.6	81.295	139	26	0	23	161	1	139	6.09e-89	278
MsaG040318	AT2G02080.2	81.295	139	26	0	23	161	1	139	6.09e-89	278
MsaG040318	AT1G68130.1	67.123	146	46	2	9	152	51	196	4.61e-69	226
MsaG040318	AT2G01940.1	66.216	148	48	2	9	154	54	201	1.03e-68	226
MsaG040318	AT1G25250.1	65.306	147	48	2	9	152	20	166	6.41e-68	221
MsaG040318	AT1G25250.3	65.306	147	48	2	9	152	43	189	8.10e-68	222
MsaG040318	AT2G01940.3	65.101	149	49	3	9	154	54	202	9.55e-65	216
MsaG040318	AT1G68130.2	64.545	110	37	2	45	152	1	110	2.73e-46	164
MsaG040318	AT2G01940.2	64.286	112	38	2	45	154	1	112	3.91e-46	164
MsaG040318	AT1G25250.2	62.162	111	39	2	45	152	1	111	1.01e-44	159
MsaG040318	AT5G22890.1	36.000	150	82	4	13	148	202	351	1.62e-23	102
MsaG040318	AT1G34370.3	33.333	153	88	3	13	151	19	171	3.89e-23	99.4
MsaG040318	AT1G34370.2	33.333	153	88	3	13	151	229	381	1.16e-22	100
MsaG040318	AT1G34370.1	33.333	153	88	3	13	151	229	381	1.16e-22	100
MsaG040318	AT3G20880.1	37.143	140	76	6	22	151	250	387	7.90e-20	91.7
MsaG040318	AT1G51220.1	33.775	151	84	5	10	151	166	309	1.17e-19	90.5
MsaG040318	AT3G57670.1	34.437	151	83	5	10	151	205	348	3.63e-19	89.4
MsaG040318	AT1G13290.1	35.862	145	79	7	22	154	95	237	6.07e-19	87.8
MsaG040318	AT1G08290.1	33.540	161	88	7	8	151	154	312	1.36e-17	84.3
MsaG040318	AT1G34790.1	30.968	155	95	5	7	151	124	276	4.89e-17	82.0

Find 96 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTAGTCCTAATCATGTTTC+TGG	0.126378	7:-99104255	MsaT040318.1:CDS
ATTATCTCCAACAACATTAA+TGG	0.225501	7:-99105507	MsaT040318.1:CDS
TGCATTTGGCTTTGCAAGTT+TGG	0.264117	7:+99104675	None:intergenic
CAGCAATGGAGAAATCAATT+TGG	0.264385	7:-99103819	MsaT040318.1:CDS
ATTGCTGTACCTAGAAAATA+TGG	0.277676	7:+99105145	None:intergenic
GTCCATGATTTCTTGGGAAT+TGG	0.293303	7:-99103952	MsaT040318.1:CDS
GGCAACAGTCCATGATTTCT+TGG	0.325473	7:-99103959	MsaT040318.1:CDS
TTGGAGCATGTTCTTGAGTT+GGG	0.332417	7:+99104562	None:intergenic
GTAATTGAAGCTGTTGGAAT+TGG	0.337918	7:+99104425	None:intergenic
TCTACAATGAATAATGATAT+TGG	0.357969	7:-99104060	MsaT040318.1:CDS
TTTAGAGGCATGGTAGAGAT+AGG	0.380908	7:+99104648	None:intergenic
TTTGTTGCCATTAATGTTGT+TGG	0.382808	7:+99105500	None:intergenic
TCTGAGGAAGTGTTGGAAAC+AGG	0.383083	7:+99104624	None:intergenic
GCAAACATGGCGAGAAGAAA+TGG	0.383718	7:-99105265	MsaT040318.1:CDS
AGCAATGGAGAAATCAATTT+GGG	0.385884	7:-99103818	MsaT040318.1:CDS
GTTCATAAGAGGGTTGGTTT+TGG	0.388862	7:+99104211	None:intergenic
AAGTGCAGATGTGAAGAAAA+AGG	0.388942	7:-99105375	MsaT040318.1:CDS
CGTGCATTAGGTGACCTTAC+TGG	0.399967	7:-99105308	MsaT040318.1:CDS
CACAATCCAGCTCGTGCATT+AGG	0.407149	7:-99105320	MsaT040318.1:CDS
ATTTCTTCTCGCCATGTTTG+CGG	0.411811	7:+99105267	None:intergenic
GCATGCCACTGGTTAATCCT+TGG	0.413966	7:+99104700	None:intergenic
TAGAGATAGGATCATGCATT+TGG	0.417757	7:+99104661	None:intergenic
TGGATTAAAGTGTTCATAAG+AGG	0.422907	7:+99104200	None:intergenic
TGAACCACAGCAACAAAGAT+TGG	0.429733	7:-99103908	MsaT040318.1:CDS
TCTAACATGGCTGGTGTTAG+TGG	0.440032	7:-99104162	MsaT040318.1:CDS
ACCAGAAAACATGTGGTACT+AGG	0.442303	7:-99105190	MsaT040318.1:CDS
CATGATTTCTTGGGAATTGG+AGG	0.445123	7:-99103949	MsaT040318.1:CDS
TTCGGTGTAACTGAAGATTC+TGG	0.450568	7:+99105435	None:intergenic
ATGGAAGATTGTGACCTCTT+CGG	0.458250	7:+99105417	None:intergenic
GCAACAGTCCATGATTTCTT+GGG	0.459975	7:-99103958	MsaT040318.1:CDS
CATGCCACCACATGCATTGT+TGG	0.462483	7:+99104524	None:intergenic
CTCCAATTCCCAAGAAATCA+TGG	0.464360	7:+99103950	None:intergenic
AGTTGAAGGGTTGAAGAAGA+TGG	0.465582	7:+99104453	None:intergenic
ATAGAACCAGAAACATGATT+AGG	0.468762	7:+99104249	None:intergenic
GGTGCTACTGCAAGCAATAG+TGG	0.468938	7:-99104318	MsaT040318.1:CDS
GATACGCTGTTCAATCAGAT+TGG	0.476113	7:-99105220	MsaT040318.1:CDS
TGGAATTGGAACTAAGTTGA+AGG	0.481061	7:+99104439	None:intergenic
GTTGGAGCATGTTCTTGAGT+TGG	0.484302	7:+99104561	None:intergenic
GATATTGGAATGTTTAGTCA+TGG	0.486932	7:-99104045	MsaT040318.1:CDS
GCTTCCAATCTTTGTTGCTG+TGG	0.487682	7:+99103904	None:intergenic
AATTGTTCAAATTTGATACA+TGG	0.491018	7:-99103991	MsaT040318.1:CDS
AGCATTAAGTCAACAGAGGT+TGG	0.491230	7:-99103884	MsaT040318.1:CDS
GTTTAATTCTGAGGAAGTGT+TGG	0.503695	7:+99104617	None:intergenic
CAAGTTTGGTGGCATGCCAC+TGG	0.504812	7:+99104689	None:intergenic
ACAATCTTCCATGGAAACTT+AGG	0.513491	7:-99105406	MsaT040318.1:CDS
TAAAGTGTTCATAAGAGGGT+TGG	0.514305	7:+99104205	None:intergenic
GATGAAGAATGTTGCACAAG+AGG	0.514880	7:-99104019	MsaT040318.1:CDS
TGCTGGCATGGTTCAAATGT+CGG	0.518440	7:-99104373	MsaT040318.1:CDS
TTGGTTGATCTGAATGATGT+TGG	0.518626	7:+99104543	None:intergenic
CGCTGTTCAATCAGATTGGA+AGG	0.519515	7:-99105216	MsaT040318.1:CDS
GTTCTTTGCCTAAGTTTCCA+TGG	0.520812	7:+99105398	None:intergenic
ATTGAAGTAATTGAAGCTGT+TGG	0.522656	7:+99104419	None:intergenic
ATGGCTGGTGTTAGTGGCGG+AGG	0.525152	7:-99104156	MsaT040318.1:CDS
GAAAAGCTTTGTTAGTAGCA+TGG	0.526473	7:-99104277	MsaT040318.1:CDS
CCAGAAAACATGTGGTACTA+GGG	0.530598	7:-99105189	MsaT040318.1:CDS
ATTTGGCTTTGCAAGTTTGG+TGG	0.531585	7:+99104678	None:intergenic
TGGTGAACACATGATGGCTC+AGG	0.534078	7:+99105341	None:intergenic
ATAGTCATTGTTTAATTCTG+AGG	0.543313	7:+99104608	None:intergenic
TGGAGGACTAATTGCTGGCA+TGG	0.545369	7:-99104385	MsaT040318.1:CDS
GGTTGAAGAAGATGGAGGCA+AGG	0.548129	7:+99104461	None:intergenic
CACTTTAATCCACTGCAGCA+TGG	0.552350	7:-99104189	MsaT040318.1:CDS
AGGTCACCTAATGCACGAGC+TGG	0.556111	7:+99105314	None:intergenic
GGCATGTTCTCAACTAGTGC+AGG	0.558296	7:-99104507	MsaT040318.1:CDS
TCATCATCATCTTCCACATG+AGG	0.560330	7:-99103845	MsaT040318.1:CDS
TGGAGCATGTTCTTGAGTTG+GGG	0.560364	7:+99104563	None:intergenic
GGATTAAAGTGTTCATAAGA+GGG	0.569779	7:+99104201	None:intergenic
CATGGATTATCTAACATGGC+TGG	0.572533	7:-99104171	MsaT040318.1:CDS
GAAGAGGTCACAATCTTCCA+TGG	0.574717	7:-99105415	MsaT040318.1:CDS
TCCATTGCTGAATCCTCATG+TGG	0.577321	7:+99103832	None:intergenic
TGCATCACAGAATGCTCTGT+GGG	0.579430	7:+99104749	None:intergenic
AATAGATCCTACTGCTGAAG+TGG	0.580873	7:-99105534	MsaT040318.1:CDS
AGGGAATACAAATGTGATTG+TGG	0.590905	7:-99105170	MsaT040318.1:CDS
GTGCTACTGCAAGCAATAGT+GGG	0.592488	7:-99104317	MsaT040318.1:CDS
GGAATTGGAACTAAGTTGAA+GGG	0.596686	7:+99104440	None:intergenic
AATGCAACCACTTCAGCAGT+AGG	0.598028	7:+99105527	None:intergenic
TGAAGGGTTGAAGAAGATGG+AGG	0.598478	7:+99104456	None:intergenic
TCCACATGAGGATTCAGCAA+TGG	0.616123	7:-99103833	MsaT040318.1:CDS
CTAATGCACGAGCTGGATTG+TGG	0.622870	7:+99105321	None:intergenic
AACATGGCTGGTGTTAGTGG+CGG	0.638041	7:-99104159	MsaT040318.1:CDS
AATCTTCAGTTACACCGAAG+AGG	0.641075	7:-99105431	MsaT040318.1:CDS
ATGCAACAAGGGATTTCAGA+GGG	0.641353	7:-99105459	MsaT040318.1:CDS
TTAGATAATCCATGCTGCAG+TGG	0.655364	7:+99104180	None:intergenic
TCAACCAACAATGCATGTGG+TGG	0.656711	7:-99104528	MsaT040318.1:CDS
TATGCAACAAGGGATTTCAG+AGG	0.657445	7:-99105460	MsaT040318.1:CDS
GGATTGTGGTGAACACATGA+TGG	0.659836	7:+99105335	None:intergenic
GCAGCATGGATTATCTAACA+TGG	0.663974	7:-99104175	MsaT040318.1:CDS
AGATCAACCAACAATGCATG+TGG	0.667821	7:-99104531	MsaT040318.1:CDS
TGGAAGCATTAAGTCAACAG+AGG	0.675968	7:-99103888	MsaT040318.1:CDS
TTTGATACATGGAAGTGATG+TGG	0.683521	7:-99103980	MsaT040318.1:CDS
ATGCATCACAGAATGCTCTG+TGG	0.684328	7:+99104748	None:intergenic
GTGTGTGAGATATGCAACAA+GGG	0.694352	7:-99105470	MsaT040318.1:CDS
GAAAACAACAGAGTAAACCA+AGG	0.707069	7:-99104717	MsaT040318.1:CDS
AAGGCTCACCAGAAAACATG+TGG	0.716558	7:-99105197	MsaT040318.1:CDS
GTAAACCAAGGATTAACCAG+TGG	0.716826	7:-99104705	MsaT040318.1:CDS
GGTGAACACATGATGGCTCA+GGG	0.717782	7:+99105342	None:intergenic
TGTGTGTGAGATATGCAACA+AGG	0.725588	7:-99105471	MsaT040318.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	99103810	99105576	99103810	ID=MsaG040318
Chr7	mRNA	99103810	99105576	99103810	ID=MsaT040318.1;Parent=MsaG040318
Chr7	exon	99103810	99104788	99103810	ID=MsaT040318.1.exon2;Parent=MsaT040318.1
Chr7	CDS	99103810	99104788	99103810	ID=cds.MsaT040318.1;Parent=MsaT040318.1
Chr7	exon	99105155	99105576	99105155	ID=MsaT040318.1.exon1;Parent=MsaT040318.1
Chr7	CDS	99105155	99105576	99105155	ID=cds.MsaT040318.1;Parent=MsaT040318.1

Gene Sequence

>MsaT040318.1

ATGGATGATGTATTTTATGAAATAGATCCTACTGCTGAAGTGGTTGCATTATCTCCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAGGGATTTCAGAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGTGCAGATGTGAAGAAAAAGGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCACAATCCAGCTCGTGCATTAGGTGACCTTACTGGCATCAAAAAACATTTTAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCTGTTCAATCAGATTGGAAGGCTCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACCCACAGAGCATTCTGTGATGCATTAACTGAAGAAAACAACAGAGTAAACCAAGGATTAACCAGTGGCATGCCACCAAACTTGCAAAGCCAAATGCATGATCCTATCTCTACCATGCCTCTAAAACCTGTTTCCAACACTTCCTCAGAATTAAACAATGACTATGACCCTAAAAATTCACTAAGATCCCCAACTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGTGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTGCCTCCATCTTCTTCAACCCTTCAACTTAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAATAAAAATGGAGGACTAATTGCTGGCATGGTTCAAATGTCGGCAACCGCTTTACTACAAAAAGCAGCACAAATGGGTGCTACTGCAAGCAATAGTGGGAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTAGTCCTAATCATGTTTCTGGTTCTATCATGATGCATCATAACCAAAACCAACCCTCTTATGAACACTTTAATCCACTGCAGCATGGATTATCTAACATGGCTGGTGTTAGTGGCGGAGGAGCATTTACTAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTACTGTTTGATAACAATACTAATGTGTCTACAATGAATAATGATATTGGAATGTTTAGTCATGGATTGATGAAGAATGTTGCACAAGAGGTTAGTAATTGTTCAAATTTGATACATGGAAGTGATGTGGCAACAGTCCATGATTTCTTGGGAATTGGAGGTTCAAGCTCAAGTTTGCATGAACCACAGCAACAAAGATTGGAAGCATTAAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCTTCCACATGAGGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA

Protein sequence

>MsaT040318.1

MDDVFYEIDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSADVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMHDPISTMPLKPVSNTSSELNNDYDPKNSLRSPTQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPSSSTLQLSSNSNSFNYFNDNKNGGLIAGMVQMSATALLQKAAQMGATASNSGNSSMMQKSFVSSMVSPNHVSGSIMMHHNQNQPSYEHFNPLQHGLSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNTNVSTMNNDIGMFSHGLMKNVAQEVSNCSNLIHGSDVATVHDFLGIGGSSSSLHEPQQQRLEALSQQRLEIMNNFHHHLPHEDSAMEKSIWDV*