AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040326

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040326 MtrunA17_Chr7g0269001 97.959 490 7 1 1 487 1 490 0.0 999
MsaG040326 MtrunA17_Chr8g0369451 26.690 281 168 6 235 478 4 283 1.75e-21 97.1
MsaG040326 MtrunA17_Chr5g0409421 26.042 288 171 7 228 478 1 283 1.91e-21 96.7
MsaG040326 MtrunA17_Chr2g0286501 31.373 255 151 10 235 472 49 296 3.37e-20 94.4
MsaG040326 MtrunA17_Chr1g0173921 29.730 259 161 12 234 476 3 256 4.24e-20 94.0
MsaG040326 MtrunA17_Chr4g0051191 28.682 258 169 10 241 485 169 424 1.40e-19 90.9
MsaG040326 MtrunA17_Chr8g0386981 32.950 261 148 14 241 481 414 667 1.49e-19 92.4
MsaG040326 MtrunA17_Chr1g0157131 27.757 263 155 9 239 476 78 330 2.23e-19 90.9
MsaG040326 MtrunA17_Chr8g0374701 29.021 286 154 12 227 476 116 388 2.32e-19 91.3
MsaG040326 MtrunA17_Chr4g0059951 26.648 349 211 12 161 485 11 338 3.79e-19 90.5
MsaG040326 MtrunA17_Chr4g0045261 29.304 273 142 10 239 476 141 397 4.56e-19 90.1
MsaG040326 MtrunA17_Chr7g0260191 30.859 256 160 10 235 476 4 256 6.31e-19 89.7
MsaG040326 MtrunA17_Chr5g0402551 29.930 284 151 13 227 476 125 394 1.37e-18 89.0
MsaG040326 MtrunA17_Chr1g0202831 32.061 262 149 13 241 481 417 670 1.93e-18 89.0
MsaG040326 MtrunA17_Chr7g0258051 30.075 266 161 12 229 476 10 268 4.79e-18 87.0
MsaG040326 MtrunA17_Chr5g0419441 27.376 263 172 9 233 480 237 495 2.02e-17 85.5
MsaG040326 MtrunA17_Chr1g0190831 30.859 256 160 11 235 476 4 256 2.22e-17 85.1
MsaG040326 MtrunA17_Chr6g0479211 28.464 267 166 11 234 478 55 318 2.62e-17 82.8
MsaG040326 MtrunA17_Chr7g0256001 29.066 289 147 14 227 476 132 401 3.84e-17 84.3
MsaG040326 MtrunA17_Chr3g0130151 29.167 264 166 11 232 478 241 500 3.96e-17 84.3
MsaG040326 MtrunA17_Chr5g0402601 26.894 264 171 9 232 475 369 630 1.48e-16 82.8
MsaG040326 MtrunA17_Chr4g0074811 26.255 259 164 9 239 476 95 347 2.00e-16 82.0
MsaG040326 MtrunA17_Chr8g0339221 23.611 288 181 5 238 487 7 293 2.50e-16 81.3
MsaG040326 MtrunA17_Chr7g0274941 31.179 263 160 13 232 476 13 272 2.68e-16 79.3
MsaG040326 MtrunA17_Chr8g0345801 27.488 211 134 7 228 425 8 212 4.81e-16 78.2
MsaG040326 MtrunA17_Chr1g0185221 28.516 256 166 10 235 476 4 256 1.04e-15 79.7
MsaG040326 MtrunA17_Chr1g0173541 26.568 271 167 10 240 487 57 318 1.18e-15 79.3
MsaG040326 MtrunA17_Chr1g0205421 27.652 264 162 11 239 482 16 270 1.36e-15 79.0
MsaG040326 MtrunA17_Chr1g0170551 28.346 254 165 10 235 476 7 255 1.48e-15 80.1
MsaG040326 MtrunA17_Chr2g0321841 29.278 263 158 12 234 476 2 256 4.31e-15 78.2
MsaG040326 MtrunA17_Chr3g0114511 27.509 269 162 9 239 486 36 292 1.40e-14 75.9
MsaG040326 MtrunA17_Chr3g0140631 25.442 283 199 6 204 476 6 286 2.81e-14 73.6
MsaG040326 MtrunA17_Chr1g0190131 28.185 259 170 9 232 476 6 262 6.07e-14 72.0
MsaG040326 MtrunA17_Chr4g0059121 31.126 151 95 5 332 474 161 310 7.79e-14 72.8
MsaG040326 MtrunA17_Chr2g0310761 24.627 268 170 11 233 473 937 1199 8.27e-14 74.3
MsaG040326 MtrunA17_Chr3g0132591 29.344 259 156 9 234 476 111 358 9.57e-14 73.2
MsaG040326 MtrunA17_Chr8g0346081 27.106 273 176 12 230 485 11 277 1.09e-13 72.8
MsaG040326 MtrunA17_Chr2g0310781 23.881 268 170 11 234 473 844 1105 1.33e-13 73.6
MsaG040326 MtrunA17_Chr8g0357611 24.719 267 169 11 234 473 1369 1630 1.65e-13 73.6
MsaG040326 MtrunA17_Chr3g0133541 29.297 256 161 12 241 477 313 567 1.71e-13 73.2
MsaG040326 MtrunA17_Chr3g0102451 27.737 274 173 10 184 436 269 538 2.54e-13 72.4
MsaG040326 MtrunA17_Chr6g0453711 26.721 247 146 11 205 426 74 310 3.89e-13 71.6
MsaG040326 MtrunA17_Chr7g0218071 24.695 328 182 14 211 481 89 408 5.88e-13 71.2
MsaG040326 MtrunA17_Chr4g0061141 27.907 215 141 8 224 426 93 305 6.07e-13 71.2
MsaG040326 MtrunA17_Chr4g0066691 26.908 249 163 9 190 426 63 304 8.59e-13 70.5
MsaG040326 MtrunA17_Chr5g0441691 24.776 335 199 14 170 476 15 324 9.34e-13 70.5
MsaG040326 MtrunA17_Chr7g0267771 24.254 268 169 9 234 476 86 344 1.02e-12 70.1
MsaG040326 MtrunA17_Chr2g0286421 28.112 249 160 10 190 426 61 302 1.09e-12 70.1
MsaG040326 MtrunA17_Chr1g0211611 32.484 157 87 8 332 475 399 549 1.16e-12 70.1
MsaG040326 MtrunA17_Chr1g0196631 25.940 266 165 11 234 472 899 1159 1.46e-12 70.5
MsaG040326 MtrunA17_Chr8g0384001 26.829 287 161 14 220 476 16 283 1.60e-12 69.7
MsaG040326 MtrunA17_Chr2g0305141 25.275 273 166 11 233 475 1081 1345 1.65e-12 70.1
MsaG040326 MtrunA17_Chr6g0461841 25.746 268 165 11 234 473 966 1227 1.68e-12 70.1
MsaG040326 MtrunA17_Chr3g0131861 28.169 213 138 8 226 426 88 297 2.01e-12 69.3
MsaG040326 MtrunA17_Chr5g0396361 29.767 215 137 9 224 426 128 340 2.26e-12 69.3
MsaG040326 MtrunA17_Chr1g0205471 25.784 287 165 13 221 478 13 280 2.79e-12 69.3
MsaG040326 MtrunA17_Chr8g0355131 26.699 206 125 6 291 476 105 304 2.99e-12 68.9
MsaG040326 MtrunA17_Chr1g0197721 25.943 212 125 7 234 421 50 253 4.04e-12 68.2
MsaG040326 MtrunA17_Chr8g0385971 27.358 212 141 7 226 426 81 290 5.25e-12 68.2
MsaG040326 MtrunA17_Chr7g0273851 25.862 290 157 13 222 485 14 271 7.58e-12 67.8
MsaG040326 MtrunA17_Chr7g0276111 26.545 275 147 13 239 476 148 404 7.70e-12 67.8
MsaG040326 MtrunA17_Chr1g0176421 26.259 278 151 14 234 476 159 417 1.71e-11 66.6
MsaG040326 MtrunA17_Chr5g0432541 24.419 258 170 11 241 478 33 285 2.60e-11 65.9
MsaG040326 MtrunA17_Chr3g0129771 28.293 205 110 8 239 420 37 227 2.85e-11 65.9
MsaG040326 MtrunA17_Chr4g0000431 26.471 272 160 11 239 481 28 288 3.24e-11 65.9
MsaG040326 MtrunA17_Chr6g0455931 26.255 259 164 13 241 478 35 287 4.32e-11 65.1
MsaG040326 MtrunA17_Chr3g0141871 24.088 274 177 10 222 484 19 272 5.11e-11 64.3
MsaG040326 MtrunA17_Chr5g0397101 25.670 261 159 9 240 475 72 322 5.20e-11 64.7
MsaG040326 MtrunA17_Chr6g0450571 25.442 283 165 11 234 484 15 283 6.87e-11 64.7
MsaG040326 MtrunA17_Chr4g0074791 25.292 257 168 9 239 475 99 351 7.07e-11 64.3
MsaG040326 MtrunA17_Chr3g0107011 29.279 222 130 10 284 487 64 276 7.47e-11 64.3
MsaG040326 MtrunA17_Chr8g0383451 27.723 202 123 8 241 426 4 198 7.83e-11 64.3
MsaG040326 MtrunA17_Chr3g0099951 24.752 202 142 5 239 431 18 218 8.58e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040326 AT1G02970.1 59.138 487 187 6 2 480 15 497 0.0 589
MsaG040326 AT4G19110.1 26.978 278 165 6 238 478 7 283 5.81e-23 102
MsaG040326 AT4G19110.2 26.978 278 165 6 238 478 7 283 6.76e-23 101
MsaG040326 AT5G45430.2 26.619 278 166 6 238 478 7 283 1.10e-20 95.1
MsaG040326 AT5G45430.1 26.619 278 166 6 238 478 7 283 1.13e-20 95.1
MsaG040326 AT3G20860.1 29.851 268 170 11 234 487 3 266 3.55e-20 93.2
MsaG040326 AT1G49580.1 30.961 281 148 12 239 487 154 420 8.74e-20 92.8
MsaG040326 AT3G19100.1 30.000 270 144 11 239 476 148 404 1.45e-19 92.4
MsaG040326 AT1G76040.2 29.434 265 156 11 234 476 113 368 1.88e-19 91.7
MsaG040326 AT1G76040.3 29.434 265 156 11 234 476 113 368 1.88e-19 91.7
MsaG040326 AT1G08650.1 29.278 263 167 7 239 484 19 279 1.39e-18 86.3
MsaG040326 AT3G12200.1 27.612 268 177 9 234 487 18 282 5.22e-18 87.4
MsaG040326 AT4G19110.3 28.000 225 125 5 291 478 3 227 1.10e-17 85.5
MsaG040326 AT3G50530.1 29.371 286 150 13 227 476 139 408 2.52e-17 85.5
MsaG040326 AT3G63280.2 30.078 256 162 11 235 476 4 256 2.55e-17 85.1
MsaG040326 AT3G63280.3 30.078 256 162 11 235 476 4 256 2.55e-17 85.1
MsaG040326 AT3G63280.1 30.078 256 162 11 235 476 4 256 2.55e-17 85.1
MsaG040326 AT3G63280.4 30.078 256 162 11 235 476 58 310 4.31e-17 84.7
MsaG040326 AT4G12020.3 27.675 271 162 11 225 482 1616 1865 8.63e-17 84.3
MsaG040326 AT4G12020.10 27.675 271 162 11 225 482 1608 1857 8.85e-17 84.3
MsaG040326 AT1G08650.2 29.200 250 158 7 239 471 19 266 1.56e-16 80.1
MsaG040326 AT4G13020.1 25.424 295 178 8 228 485 1 290 2.06e-16 81.6
MsaG040326 AT4G13020.4 25.424 295 178 8 228 485 1 290 2.06e-16 81.6
MsaG040326 AT4G13020.7 25.424 295 178 8 228 485 1 290 2.26e-16 81.3
MsaG040326 AT4G13020.6 25.424 295 178 8 228 485 1 290 2.33e-16 81.3
MsaG040326 AT4G04700.1 26.996 263 161 10 239 476 32 288 2.81e-16 81.6
MsaG040326 AT4G08470.1 27.799 259 170 10 233 477 301 556 2.92e-16 82.0
MsaG040326 AT4G13020.2 25.424 295 178 8 228 485 9 298 3.49e-16 81.3
MsaG040326 AT4G13020.3 25.424 295 178 8 228 485 9 298 3.50e-16 81.3
MsaG040326 AT1G18890.1 28.571 266 157 10 240 481 68 324 3.76e-16 81.6
MsaG040326 AT5G28290.1 28.405 257 169 9 235 478 4 258 4.13e-16 81.3
MsaG040326 AT5G28290.2 28.405 257 169 9 235 478 4 258 4.13e-16 81.3
MsaG040326 AT5G28290.3 28.405 257 169 9 235 478 4 258 4.45e-16 81.3
MsaG040326 AT1G69220.1 27.376 263 172 9 233 480 247 505 4.74e-16 81.6
MsaG040326 AT3G12200.2 26.619 278 177 10 234 487 18 292 5.72e-16 80.9
MsaG040326 AT4G04710.2 25.391 256 168 7 239 476 40 290 5.89e-16 80.5
MsaG040326 AT3G10540.1 25.095 263 162 9 234 469 44 298 6.58e-16 80.5
MsaG040326 AT1G50240.3 30.040 253 164 10 234 476 5 254 8.34e-16 81.3
MsaG040326 AT1G50240.2 30.040 253 164 10 234 476 5 254 8.34e-16 81.3
MsaG040326 AT4G04710.4 25.188 266 169 7 239 476 40 303 1.06e-15 80.1
MsaG040326 AT4G04710.1 25.188 266 169 7 239 476 40 303 1.09e-15 79.7
MsaG040326 AT1G54510.4 29.545 264 166 11 238 483 7 268 1.35e-15 80.1
MsaG040326 AT1G54510.2 29.545 264 166 11 238 483 7 268 1.35e-15 80.1
MsaG040326 AT1G54510.1 29.545 264 166 11 238 483 7 268 1.35e-15 80.1
MsaG040326 AT1G54510.3 29.545 264 166 11 238 483 7 268 1.35e-15 80.1
MsaG040326 AT4G21940.3 26.054 261 162 10 239 476 106 358 1.42e-15 79.3
MsaG040326 AT4G21940.2 26.054 261 162 10 239 476 106 358 1.73e-15 79.3
MsaG040326 AT3G21220.2 24.345 267 178 9 233 481 68 328 1.73e-15 78.2
MsaG040326 AT3G21220.1 24.345 267 178 9 233 481 68 328 1.73e-15 78.2
MsaG040326 AT4G29810.2 26.119 268 175 11 233 480 77 341 1.90e-15 78.2
MsaG040326 AT4G29810.1 26.119 268 175 11 233 480 68 332 2.00e-15 78.2
MsaG040326 AT4G21940.1 26.054 261 162 10 239 476 106 358 2.02e-15 79.3
MsaG040326 AT1G12680.1 28.679 265 156 11 241 484 113 365 2.03e-15 79.0
MsaG040326 AT5G12480.1 24.308 325 200 12 178 475 9 314 2.73e-15 79.0
MsaG040326 AT5G04510.1 24.715 263 163 9 234 469 43 297 3.30e-15 78.6
MsaG040326 AT5G04510.2 24.715 263 163 9 234 469 43 297 3.32e-15 77.8
MsaG040326 AT3G15220.1 26.236 263 181 7 235 486 15 275 6.10e-15 78.2
MsaG040326 AT5G66850.2 26.616 263 171 9 241 483 352 612 7.48e-15 77.8
MsaG040326 AT5G66850.1 26.616 263 171 9 241 483 352 612 8.52e-15 77.4
MsaG040326 AT1G12580.1 26.568 271 156 10 239 480 48 304 1.01e-14 77.0
MsaG040326 AT5G19450.2 26.415 265 164 9 240 481 62 318 1.10e-14 77.0
MsaG040326 AT5G19450.1 26.415 265 164 9 240 481 62 318 1.10e-14 77.0
MsaG040326 AT4G04695.1 25.843 267 159 10 239 476 32 288 1.42e-14 76.3
MsaG040326 AT4G13020.5 23.607 305 180 10 228 485 1 299 1.83e-14 75.9
MsaG040326 AT4G13020.8 23.607 305 180 10 228 485 1 299 2.32e-14 75.1
MsaG040326 AT2G45490.1 25.000 256 176 6 233 476 20 271 2.66e-14 73.9
MsaG040326 AT1G69220.2 27.626 257 167 9 239 480 226 478 3.19e-14 75.9
MsaG040326 AT1G30270.1 27.885 208 137 7 291 486 88 294 5.48e-14 74.7
MsaG040326 AT1G30270.2 27.885 208 137 7 291 486 88 294 5.83e-14 74.3
MsaG040326 AT2G25880.1 26.070 257 172 7 233 476 23 274 1.40e-13 71.6
MsaG040326 AT3G49370.1 29.885 174 93 6 264 421 180 340 1.55e-13 73.6
MsaG040326 AT1G30270.3 30.588 170 107 6 327 486 29 197 1.60e-13 72.4
MsaG040326 AT2G25880.4 26.070 257 172 7 233 476 36 287 1.61e-13 71.6
MsaG040326 AT3G57530.2 25.455 275 165 12 240 487 68 329 1.91e-13 72.8
MsaG040326 AT4G29810.3 26.054 261 170 11 233 473 77 334 2.98e-13 71.2
MsaG040326 AT3G57530.1 25.455 275 165 12 240 487 68 329 4.07e-13 72.0
MsaG040326 AT1G79570.2 25.180 278 173 13 225 473 953 1224 4.36e-13 72.4
MsaG040326 AT1G79570.1 25.180 278 173 13 225 473 953 1224 4.36e-13 72.4
MsaG040326 AT5G50860.1 28.365 208 136 7 230 426 109 314 4.52e-13 72.0
MsaG040326 AT1G01140.1 25.275 273 181 9 229 483 12 279 4.54e-13 71.6
MsaG040326 AT1G01140.3 25.275 273 181 9 229 483 12 279 4.85e-13 71.6
MsaG040326 AT1G23700.2 28.889 270 164 13 234 484 15 275 5.25e-13 70.9
MsaG040326 AT5G50860.2 28.365 208 136 7 230 426 109 314 5.82e-13 71.2
MsaG040326 AT4G36070.1 28.000 200 116 6 241 421 77 267 5.90e-13 71.6
MsaG040326 AT1G23700.1 28.889 270 164 13 234 484 15 275 6.76e-13 71.2
MsaG040326 AT1G23700.3 28.889 270 164 13 234 484 15 275 7.26e-13 70.9
MsaG040326 AT5G58350.1 27.586 261 162 14 239 478 23 277 7.30e-13 71.2
MsaG040326 AT4G36070.2 28.000 200 116 6 241 421 77 267 7.58e-13 71.2
MsaG040326 AT1G49160.2 28.155 206 111 8 239 421 32 223 9.22e-13 70.9
MsaG040326 AT3G50730.1 25.856 263 170 9 232 472 33 292 1.24e-12 69.7
MsaG040326 AT1G54610.1 26.693 251 165 9 188 426 75 318 1.34e-12 70.5
MsaG040326 AT1G54610.3 26.693 251 165 9 188 426 75 318 1.34e-12 70.5
MsaG040326 AT1G54610.2 26.693 251 165 9 188 426 75 318 1.34e-12 70.5
MsaG040326 AT2G38910.1 25.228 329 182 14 188 476 86 390 1.42e-12 70.5
MsaG040326 AT5G04510.3 25.943 212 125 7 234 421 43 246 1.76e-12 68.6
MsaG040326 AT3G23000.1 25.893 224 148 7 277 486 69 288 1.95e-12 69.3
MsaG040326 AT1G16270.1 24.719 267 169 11 234 473 862 1123 2.28e-12 70.1
MsaG040326 AT1G16270.2 24.719 267 169 11 234 473 862 1123 2.28e-12 70.1
MsaG040326 AT1G16270.3 24.719 267 169 11 234 473 862 1123 2.28e-12 70.1
MsaG040326 AT4G04740.4 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT4G04740.6 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT4G04740.5 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT4G04740.3 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT4G04740.1 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT4G04740.7 25.620 242 149 10 258 476 92 325 2.29e-12 69.7
MsaG040326 AT2G26980.5 26.540 211 138 6 284 480 64 271 2.38e-12 69.3
MsaG040326 AT2G26980.1 26.540 211 138 6 284 480 64 271 2.61e-12 68.9
MsaG040326 AT5G24360.1 28.044 271 140 11 257 478 480 744 2.82e-12 69.7
MsaG040326 AT4G04740.2 25.620 242 149 10 258 476 92 325 2.95e-12 69.3
MsaG040326 AT5G24360.2 28.044 271 140 11 257 478 486 750 3.49e-12 69.3
MsaG040326 AT5G24360.3 28.044 271 140 11 257 478 466 730 3.54e-12 69.3
MsaG040326 AT2G26980.3 26.540 211 138 6 284 480 64 271 3.86e-12 68.6
MsaG040326 AT3G07980.1 27.068 266 170 11 239 485 24 284 3.89e-12 69.7
MsaG040326 AT2G26980.4 26.540 211 138 6 284 480 74 281 4.31e-12 68.6
MsaG040326 AT3G07980.2 27.068 266 170 11 239 485 24 284 4.34e-12 69.3
MsaG040326 AT2G35050.1 24.286 280 169 12 234 484 973 1238 5.08e-12 68.9
MsaG040326 AT2G35050.2 24.286 280 169 12 234 484 973 1238 5.08e-12 68.9
MsaG040326 AT1G59580.2 24.272 309 170 12 222 476 19 317 6.06e-12 67.8
MsaG040326 AT1G59580.1 24.272 309 170 12 222 476 19 317 6.06e-12 67.8
MsaG040326 AT5G12180.1 26.692 266 154 12 239 476 77 329 6.35e-12 68.2
MsaG040326 AT4G26890.1 29.070 172 109 8 316 479 88 254 6.46e-12 67.8
MsaG040326 AT5G19360.1 24.419 258 170 9 239 476 72 324 1.05e-11 67.4
MsaG040326 AT3G10660.2 25.180 278 169 11 228 476 175 442 1.15e-11 67.8
MsaG040326 AT3G10660.1 25.180 278 169 11 228 476 175 442 1.15e-11 67.8
MsaG040326 AT3G53930.2 24.345 267 180 8 230 478 15 277 1.39e-11 67.4
MsaG040326 AT4G10010.2 26.522 230 148 9 215 426 130 356 1.40e-11 67.4
MsaG040326 AT3G53930.1 25.000 268 177 10 230 478 15 277 1.40e-11 67.4
MsaG040326 AT1G04700.1 24.535 269 171 11 233 474 764 1027 1.45e-11 67.8
MsaG040326 AT1G04700.2 24.535 269 171 11 233 474 764 1027 1.45e-11 67.8
MsaG040326 AT5G23580.1 24.809 262 160 10 241 476 28 278 1.49e-11 67.0
MsaG040326 AT3G45640.1 28.251 223 139 9 221 426 20 238 1.65e-11 66.2
MsaG040326 AT3G22420.4 25.573 262 140 11 239 474 99 331 1.71e-11 67.0
MsaG040326 AT3G22420.1 25.573 262 140 11 239 474 28 260 1.78e-11 67.0
MsaG040326 AT3G12200.4 26.570 207 137 7 294 487 12 216 1.88e-11 66.6
MsaG040326 AT3G22420.3 25.573 262 140 11 239 474 99 331 1.93e-11 67.0
MsaG040326 AT3G22420.5 25.573 262 140 11 239 474 28 260 2.10e-11 66.6
MsaG040326 AT1G71530.2 27.273 209 137 8 230 426 142 347 2.46e-11 66.2
MsaG040326 AT2G35890.2 24.138 261 165 9 240 476 137 388 2.65e-11 66.2
MsaG040326 AT2G35890.1 24.138 261 165 9 240 476 137 388 2.65e-11 66.2
MsaG040326 AT1G53570.5 25.097 259 153 10 241 485 220 451 2.81e-11 66.2
MsaG040326 AT5G14720.1 25.000 276 169 10 234 481 15 280 3.47e-11 66.2
MsaG040326 AT5G14720.2 25.000 276 169 10 234 481 15 280 3.47e-11 66.2
MsaG040326 AT1G71530.1 27.586 203 134 7 235 426 147 347 3.79e-11 65.9
MsaG040326 AT1G71530.4 26.606 218 145 8 230 435 142 356 4.23e-11 65.1
MsaG040326 AT5G10930.1 25.581 258 160 9 241 476 18 265 4.31e-11 65.5
MsaG040326 AT1G54960.1 27.692 260 161 10 241 477 74 329 4.37e-11 65.9
MsaG040326 AT1G54960.2 27.692 260 161 10 241 477 74 329 4.37e-11 65.9
MsaG040326 AT4G24100.1 24.911 281 171 10 227 478 25 294 4.44e-11 65.9
MsaG040326 AT1G53050.2 27.092 251 147 11 215 448 108 339 4.58e-11 65.9
MsaG040326 AT1G53050.1 27.092 251 147 11 215 448 108 339 4.58e-11 65.9
MsaG040326 AT4G30960.1 26.389 216 131 9 291 487 81 287 4.79e-11 65.1
MsaG040326 AT5G39420.1 29.064 203 131 8 235 426 105 305 4.87e-11 65.5
MsaG040326 AT4G24100.2 24.911 281 171 10 227 478 25 294 4.98e-11 65.5
MsaG040326 AT4G24100.3 24.911 281 171 10 227 478 41 310 5.27e-11 65.5
MsaG040326 AT4G24100.4 24.911 281 171 10 227 478 41 310 5.39e-11 65.5
MsaG040326 AT1G35670.1 24.345 267 177 9 230 476 21 282 5.53e-11 65.1
MsaG040326 AT1G71530.3 27.273 209 137 8 230 426 142 347 5.75e-11 65.1
MsaG040326 AT4G23650.1 27.203 261 157 11 240 476 83 334 5.83e-11 65.1
MsaG040326 AT4G08470.2 31.333 150 95 5 233 376 301 448 5.83e-11 65.1
MsaG040326 AT3G59790.1 28.141 199 132 7 238 426 63 260 7.00e-11 64.3
MsaG040326 AT1G48260.1 29.208 202 125 9 281 468 59 256 8.15e-11 64.3
MsaG040326 AT5G55090.1 26.012 173 117 7 316 480 89 258 9.30e-11 64.3

Find 124 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCTTCCCCTTGATTT+TGG 0.064851 7:+99159986 None:intergenic
GTCTATAAGCTTGGTGATTT+TGG 0.139018 7:-99157039 MsaT040326.1:CDS
TTCAATTTCTCCGGGGATTT+AGG 0.142730 7:+99159465 None:intergenic
CCATCATAAGCTGTAAATTT+AGG 0.146319 7:+99157961 None:intergenic
CTTAAGGCCCTGTCGAAAAT+TGG 0.161314 7:+99156019 None:intergenic
CATAGGGATCTGTCTCCTTT+TGG 0.182775 7:+99158154 None:intergenic
CTTTAGTAACCCCTATTTAA+AGG 0.192157 7:-99158184 MsaT040326.1:CDS
TTGGGAAAGGTCCTTTAAAT+AGG 0.227358 7:+99158173 None:intergenic
TACCTGCACATTTGGATCTT+TGG 0.232933 7:+99158127 None:intergenic
CTGCAGCTACATTGCGTTGC+AGG 0.263739 7:-99158224 MsaT040326.1:CDS
GGTGGTCATAATTCTCATTA+AGG 0.271396 7:+99156947 None:intergenic
TCAATTTCTCCGGGGATTTA+GGG 0.297218 7:+99159466 None:intergenic
TACTTCTCTTATCAGCAAAT+TGG 0.305098 7:-99157808 MsaT040326.1:intron
TTCAAAATCCGCTGATTATC+CGG 0.313101 7:+99159627 None:intergenic
CAAATCAAAATCCTTCCATT+AGG 0.314586 7:-99159832 MsaT040326.1:CDS
AATTCTCATTAAGGATTTCC+TGG 0.316106 7:+99156956 None:intergenic
TGGGAAAGGTCCTTTAAATA+GGG 0.319625 7:+99158174 None:intergenic
TTCTTAGTCAAGATTTCTTC+TGG 0.320527 7:-99159769 MsaT040326.1:intron
GAACGGTATCGATTTCAATA+AGG 0.332586 7:-99159607 MsaT040326.1:intron
TTGTGGGCTATTATACTTCA+TGG 0.333207 7:-99157451 MsaT040326.1:CDS
CATCATAAGCTGTAAATTTA+GGG 0.350243 7:+99157962 None:intergenic
TTCGTAGTATTCAATTTCTC+CGG 0.354380 7:+99159456 None:intergenic
TAGAGTGATACCTGCACATT+TGG 0.356447 7:+99158119 None:intergenic
CAGAATGTGACACATAGTTC+TGG 0.366945 7:+99158244 None:intergenic
CAAGTTCCACAACTTGTTGA+TGG 0.375134 7:+99158331 None:intergenic
TCTCTGAATCGAGAAGGTTC+TGG 0.376382 7:+99159855 None:intergenic
AAATCAAAATCCTTCCATTA+GGG 0.376468 7:-99159831 MsaT040326.1:CDS
TTGAAGGAGAAAAGCTTTGA+TGG 0.378377 7:-99157618 MsaT040326.1:intron
AAAGTATTAAAGCGAATAGA+TGG 0.379092 7:-99157760 MsaT040326.1:CDS
GGTTCAAGCTCTGGCAGCAT+TGG 0.388551 7:-99157594 MsaT040326.1:CDS
CCTAAATTTACAGCTTATGA+TGG 0.388769 7:-99157961 MsaT040326.1:CDS
GTTCAAGCTCTGGCAGCATT+GGG 0.395220 7:-99157593 MsaT040326.1:intron
GACACATAGTTCTGGGCCTT+CGG 0.398281 7:+99158252 None:intergenic
TTAAGGCCCTGTCGAAAATT+GGG 0.408531 7:+99156020 None:intergenic
AAATCACCTATGCCAGAATC+AGG 0.426205 7:-99156871 MsaT040326.1:CDS
CTGGCAGAAGGCCTCTTAAC+CGG 0.429177 7:+99156058 None:intergenic
ATCAGCATCGGTAGCATCAT+TGG 0.430519 7:+99159805 None:intergenic
TTATCCGGAGTTATGTAATC+TGG 0.433913 7:+99159642 None:intergenic
TTTAAAGGACCTTTCCCAAA+AGG 0.437149 7:-99158169 MsaT040326.1:CDS
CATCAACAAGTTGTGGAACT+TGG 0.439973 7:-99158330 MsaT040326.1:CDS
GAAGGCCTCTTAACCGGATC+AGG 0.440181 7:+99156064 None:intergenic
AGCATCATTGGTAACCCTAA+TGG 0.442002 7:+99159817 None:intergenic
CGTGCATCTCCTTCCTCAAT+CGG 0.457649 7:+99156988 None:intergenic
GAAGAAGTTATAGTCGTTGT+TGG 0.463269 7:+99159884 None:intergenic
TTTGATGGAGGTTCAAGCTC+TGG 0.468681 7:-99157603 MsaT040326.1:CDS
GGCAAGTTGCCACTCCTGCC+TGG 0.472331 7:-99156823 MsaT040326.1:CDS
TGATAGTAGCCTTCCGATTG+AGG 0.477068 7:-99157001 MsaT040326.1:CDS
AAAATCAAGGGGAAGGAAGA+AGG 0.477940 7:-99159984 MsaT040326.1:CDS
TTGGATCTTTGGTTTGCATA+GGG 0.480814 7:+99158138 None:intergenic
GGCCATGATTGATCCTGATC+CGG 0.484321 7:-99156077 MsaT040326.1:CDS
TCGTAGTATTCAATTTCTCC+GGG 0.487268 7:+99159457 None:intergenic
ATTCTCATTAAGGATTTCCT+GGG 0.493473 7:+99156957 None:intergenic
CACTGACTTTCATGAGATTG+AGG 0.501967 7:-99157923 MsaT040326.1:intron
TTGTTGATGGTCACCAGAAA+AGG 0.502504 7:+99158344 None:intergenic
TTCTCCGGGGATTTAGGGCA+AGG 0.506459 7:+99159471 None:intergenic
AGAATGTGACACATAGTTCT+GGG 0.510819 7:+99158245 None:intergenic
TCTTATCAGCAAATTGGTCG+AGG 0.512410 7:-99157802 MsaT040326.1:intron
GAAAAGCAAAAGATGTCGAC+TGG 0.512432 7:-99159436 MsaT040326.1:CDS
TTGATCCTGATCCGGTTAAG+AGG 0.512884 7:-99156069 MsaT040326.1:CDS
ACAAGTTGTGGAACTTGGTA+AGG 0.513324 7:-99158325 MsaT040326.1:CDS
CTAAATTTACAGCTTATGAT+GGG 0.515148 7:-99157960 MsaT040326.1:CDS
TGCAGCTACATTGCGTTGCA+GGG 0.517169 7:-99158223 MsaT040326.1:CDS
TGGGTTCTCTACCAACTCTC+TGG 0.519512 7:+99156039 None:intergenic
CCAGAAAAGGTAGGGCTAAG+AGG 0.520423 7:+99158357 None:intergenic
CAGAAAAGGTAGGGCTAAGA+GGG 0.522352 7:+99158358 None:intergenic
GTTATAGTCGTTGTTGGTAA+CGG 0.526884 7:+99159890 None:intergenic
GGAAGTAGCTGTTGATATAA+CGG 0.528442 7:-99158289 MsaT040326.1:CDS
TGACATCCTGATTCTGGCAT+AGG 0.528630 7:+99156865 None:intergenic
TTTGGATCTTTGGTTTGCAT+AGG 0.529211 7:+99158137 None:intergenic
AACCAAAGATCCAAATGTGC+AGG 0.530641 7:-99158129 MsaT040326.1:intron
GCAATTTCAAAACTTGCTCA+AGG 0.530918 7:-99156791 MsaT040326.1:intron
CGAACAACTGTACATTCAGA+TGG 0.538277 7:-99157420 MsaT040326.1:CDS
GAGGCCTTCTGCCAGAGAGT+TGG 0.541203 7:-99156050 MsaT040326.1:CDS
GGTTACCATGAGAACATTGT+GGG 0.544802 7:-99157467 MsaT040326.1:CDS
TGGTGACCATCAACAAGTTG+TGG 0.545627 7:-99158337 MsaT040326.1:CDS
GGGAAAGGTCCTTTAAATAG+GGG 0.547532 7:+99158175 None:intergenic
AACCGGATCAGGATCAATCA+TGG 0.556561 7:+99156075 None:intergenic
ACCGATGCTGATTCAAGAGA+TGG 0.558070 7:-99159794 MsaT040326.1:CDS
GTTGATATAACGGTAGCTGC+TGG 0.559132 7:-99158279 MsaT040326.1:CDS
AAACCCCAAAATCAAGGGGA+AGG 0.559167 7:-99159991 MsaT040326.1:CDS
ACGCAGTACACAGTTACAGC+TGG 0.560665 7:-99157719 MsaT040326.1:CDS
AAATAGGGGTTACTAAAGCA+AGG 0.563788 7:+99158189 None:intergenic
TAGCCCTTGCCCTAAATCCC+CGG 0.565880 7:-99159475 MsaT040326.1:CDS
AATAGCCCACAATGTTCTCA+TGG 0.571060 7:+99157462 None:intergenic
AGAAAATATCAACCTTGTCA+AGG 0.580681 7:+99156926 None:intergenic
TGAAATTGCAATGAATGACC+AGG 0.582007 7:+99156805 None:intergenic
AGTAGCCTTCCGATTGAGGA+AGG 0.582590 7:-99156997 MsaT040326.1:CDS
AATGAATGACCAGGCAGGAG+TGG 0.584677 7:+99156814 None:intergenic
AGATGCACGTTATATGCCCC+AGG 0.587833 7:-99156974 MsaT040326.1:CDS
GATTTGTCTCTGAATCGAGA+AGG 0.588616 7:+99159849 None:intergenic
CTTATCAGCAAATTGGTCGA+GGG 0.596939 7:-99157801 MsaT040326.1:intron
AGGTTACCATGAGAACATTG+TGG 0.597160 7:-99157468 MsaT040326.1:CDS
ACTTGTCATAGATGGTGTCT+CGG 0.597463 7:-99158385 MsaT040326.1:intron
GATGGTCACCAGAAAAGGTA+GGG 0.598031 7:+99158349 None:intergenic
TCTACCAACTCTCTGGCAGA+AGG 0.598894 7:+99156046 None:intergenic
TACTCCAGATTACATAACTC+CGG 0.599238 7:-99159646 MsaT040326.1:CDS
TGATGGTCACCAGAAAAGGT+AGG 0.601997 7:+99158348 None:intergenic
ATCGAGAAGGTTCTGGAAGG+CGG 0.606702 7:+99159862 None:intergenic
CATCTCCTTCCTCAATCGGA+AGG 0.611201 7:+99156992 None:intergenic
TCTCCGGGGATTTAGGGCAA+GGG 0.611486 7:+99159472 None:intergenic
GCCATCTCTTGAATCAGCAT+CGG 0.612326 7:+99159793 None:intergenic
GGGTTACTAAAGCAAGGAGG+AGG 0.617439 7:+99158195 None:intergenic
AAGGAGAAAAGCTTTGATGG+AGG 0.617943 7:-99157615 MsaT040326.1:CDS
AGTTACAGCTGGATACAGAA+AGG 0.621788 7:-99157708 MsaT040326.1:intron
TTGTCCTTCTGCTAATAACT+CGG 0.621799 7:+99157361 None:intergenic
CATAGCTTATCTGTAAACAA+AGG 0.622293 7:-99157386 MsaT040326.1:CDS
ATTGCAATGAATGACCAGGC+AGG 0.623023 7:+99156809 None:intergenic
AAATATCAACCTTGTCAAGG+TGG 0.623552 7:+99156929 None:intergenic
TGGTAAGGACTCTGTTGCAG+AGG 0.626891 7:-99158310 MsaT040326.1:CDS
GGCTCCGAGTTATTAGCAGA+AGG 0.627136 7:-99157365 MsaT040326.1:CDS
GGAAGGAAGAAGGCACCACT+CGG 0.629021 7:-99159974 MsaT040326.1:CDS
TTGATAAATAGAAACTCCCA+AGG 0.632014 7:+99156903 None:intergenic
GAATTATGACCACCTTGACA+AGG 0.636957 7:-99156938 MsaT040326.1:CDS
TCATTGGTAACCCTAATGGA+AGG 0.639494 7:+99159821 None:intergenic
TTCTCATTAAGGATTTCCTG+GGG 0.641683 7:+99156958 None:intergenic
TGAATCGAGAAGGTTCTGGA+AGG 0.655355 7:+99159859 None:intergenic
AAAAGCAAAAGATGTCGACT+GGG 0.667703 7:-99159435 MsaT040326.1:intron
GGTAGCTGCTGGTAAGCCGA+AGG 0.673285 7:-99158268 MsaT040326.1:CDS
ACATAACTCCGGATAATCAG+CGG 0.676793 7:-99159635 MsaT040326.1:CDS
CGTAGTATTCAATTTCTCCG+GGG 0.678931 7:+99159458 None:intergenic
ACTGCGATTTATACACGACA+AGG 0.681658 7:-99157112 MsaT040326.1:CDS
CTTGTGTTACTCGCACCGAG+TGG 0.719837 7:+99159959 None:intergenic
CTGCGATTTATACACGACAA+GGG 0.720865 7:-99157111 MsaT040326.1:CDS
TAGGGGTTACTAAAGCAAGG+AGG 0.776403 7:+99158192 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 99156003 99160023 99156003 ID=MsaG040326
Chr7 mRNA 99156003 99160023 99156003 ID=MsaT040326.1;Parent=MsaG040326
Chr7 exon 99156003 99156098 99156003 ID=MsaT040326.1.exon10;Parent=MsaT040326.1
Chr7 CDS 99156003 99156098 99156003 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99156792 99157145 99156792 ID=MsaT040326.1.exon9;Parent=MsaT040326.1
Chr7 CDS 99156792 99157145 99156792 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99157340 99157488 99157340 ID=MsaT040326.1.exon8;Parent=MsaT040326.1
Chr7 CDS 99157340 99157488 99157340 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99157594 99157634 99157594 ID=MsaT040326.1.exon7;Parent=MsaT040326.1
Chr7 CDS 99157594 99157634 99157594 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99157709 99157815 99157709 ID=MsaT040326.1.exon6;Parent=MsaT040326.1
Chr7 CDS 99157709 99157815 99157709 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99157924 99157991 99157924 ID=MsaT040326.1.exon5;Parent=MsaT040326.1
Chr7 CDS 99157924 99157991 99157924 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99158130 99158396 99158130 ID=MsaT040326.1.exon4;Parent=MsaT040326.1
Chr7 CDS 99158130 99158396 99158130 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99159436 99159502 99159436 ID=MsaT040326.1.exon3;Parent=MsaT040326.1
Chr7 CDS 99159436 99159502 99159436 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99159608 99159668 99159608 ID=MsaT040326.1.exon2;Parent=MsaT040326.1
Chr7 CDS 99159608 99159668 99159608 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Chr7 exon 99159770 99160023 99159770 ID=MsaT040326.1.exon1;Parent=MsaT040326.1
Chr7 CDS 99159770 99160023 99159770 ID=cds.MsaT040326.1;Parent=MsaT040326.1
Gene Sequence

>MsaT040326.1

ATGACGAGAAAAACCCCAAAATCAAGGGGAAGGAAGAAGGCACCACTCGGTGCGAGTAACACAAGACAGTTACAGCTTCAGCTCAGCAATTTCTCTCTCAAACAATACAAACCGTTACCAACAACGACTATAACTTCTTCCGCCTTCCAGAACCTTCTCGATTCAGAGACAAATCAAAATCCTTCCATTAGGGTTACCAATGATGCTACCGATGCTGATTCAAGAGATGGCATTCTTAGTCAAGATTTCTTCTGTACTCCAGATTACATAACTCCGGATAATCAGCGGATTTTGAACGGTATCGATTTCAATAAGGATAATAGCCCTTGCCCTAAATCCCCGGAGAAATTGAATACTACGAAAAGCAAAAGATGTCGACTGGATGGTGTCTCGGCAAACCCTCTTAGCCCTACCTTTTCTGGTGACCATCAACAAGTTGTGGAACTTGGTAAGGACTCTGTTGCAGAGGAAGTAGCTGTTGATATAACGGTAGCTGCTGGTAAGCCGAAGGCCCAGAACTATGTGTCACATTCTGCAGCTACATTGCGTTGCAGGGCTATACCTCCTCCTTGCTTTAGTAACCCCTATTTAAAGGACCTTTCCCAAAAGGAGACAGATCCCTATGCAAACCAAAGATCCAAATGTGCAGGTTTCTTCCCTAAATTTACAGCTTATGATGGGCTCTCACGCTATCGCACTGACTTTCATGAGATTGAGCAAATTGGTCGAGGGTACTTTAGTTGTGTTTTTAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGTACACAGTTACAGCTGGATACAGAAAGGAGAAAAGCTTTGATGGAGGTTCAAGCTCTGGCAGCATTGGGTTACCATGAGAACATTGTGGGCTATTATACTTCATGGTTTGAAAACGAACAACTGTACATTCAGATGGAGATATGTGATCATAGCTTATCTGTAAACAAAGGCTCCGAGTTATTAGCAGAAGGACAAGTGTTAGAAGTTTTATATCAAGTTGCTAATGCACTGCGATTTATACACGACAAGGGAATAGCTCATCTTGATCTTAAACCTGATAATATTTATGTAAAAAATGGTGTCTATAAGCTTGGTGATTTTGGATGTGCAACTCTTACTGATAGTAGCCTTCCGATTGAGGAAGGAGATGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGACCACCTTGACAAGGTTGATATTTTCTCCTTGGGAGTTTCTATTTATCAACTCATCCGAAAATCACCTATGCCAGAATCAGGATGTCATTTTTTGAATCTTAAAGAAGGCAAGTTGCCACTCCTGCCTGGTCATTCATTGCAATTTCAAAACTTGCTCAAGGCCATGATTGATCCTGATCCGGTTAAGAGGCCTTCTGCCAGAGAGTTGGTAGAGAACCCAATTTTCGACAGGGCCTTAAGAACAGCGAAAAATTGA
Protein sequence

>MsaT040326.1

MTRKTPKSRGRKKAPLGASNTRQLQLQLSNFSLKQYKPLPTTTITSSAFQNLLDSETNQNPSIRVTNDATDADSRDGILSQDFFCTPDYITPDNQRILNGIDFNKDNSPCPKSPEKLNTTKSKRCRLDGVSANPLSPTFSGDHQQVVELGKDSVAEEVAVDITVAAGKPKAQNYVSHSAATLRCRAIPPPCFSNPYLKDLSQKETDPYANQRSKCAGFFPKFTAYDGLSRYRTDFHEIEQIGRGYFSCVFKVLKRIDGCLYAVKRSTQLQLDTERRKALMEVQALAALGYHENIVGYYTSWFENEQLYIQMEICDHSLSVNKGSELLAEGQVLEVLYQVANALRFIHDKGIAHLDLKPDNIYVKNGVYKLGDFGCATLTDSSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGVSIYQLIRKSPMPESGCHFLNLKEGKLPLLPGHSLQFQNLLKAMIDPDPVKRPSARELVENPIFDRALRTAKN*