AlfalfaGEDB | MsaG040368

M. sativa ssp. caerulea / MsaG040368

KEGG: -
GO: GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040368	KEH19401.1	70.787	178	46	3	7	182	1	174	3.28e-77	244

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040368	sp\|Q944S2\|GTS1_ARATH	53.416	161	67	4	20	176	25	181	4.76e-47	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040368	tr\|A0A072TQE2\|A0A072TQE2_MEDTR	70.787	178	46	3	7	182	1	174	1.57e-77	244

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040368	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040368	MtrunA17_Chr7g0269261	70.787	178	46	3	7	182	1	174	1.54e-79	244
MsaG040368	MtrunA17_Chr7g0269781	51.852	189	23	3	128	249	50	237	1.97e-54	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040368	AT2G47790.1	53.416	161	67	4	20	176	25	181	4.84e-48	163
MsaG040368	AT5G06420.1	52.564	156	24	1	146	251	129	284	5.02e-46	158
MsaG040368	AT5G06420.2	52.564	156	24	1	146	251	129	284	5.02e-46	158
MsaG040368	AT1G01350.1	51.923	156	25	1	146	251	94	249	5.55e-45	154

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Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAGTTGGGCTTCT+CGG	0.382812	7:+99532807	None:intergenic
AAACTGTATTCACCAGTGGT+GGG	0.659751	7:-99533414	MsaT040368.1:CDS
AACTCTATCCAAACTAATTT+CGG	0.290124	7:-99533647	MsaT040368.1:CDS
AAGGGATGATTGGAGTTCAA+TGG	0.555515	7:-99533463	MsaT040368.1:CDS
AATCGTCACCGAAATTAGTT+TGG	0.355363	7:+99533639	None:intergenic
AATGGAAGCAATTGCGGCCA+TGG	0.476431	7:-99533729	MsaT040368.1:CDS
AATGGAATGAAGCCGAGAAG+AGG	0.595307	7:-99532519	MsaT040368.1:CDS
AATTGCGGCCATGGATGTCG+AGG	0.639683	7:-99533720	MsaT040368.1:CDS
ACAATAAATGGAAGCAATTG+CGG	0.543794	7:-99533735	None:intergenic
ACCCGGACTTGTAGTCGCCT+CGG	0.548237	7:+99532557	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	99532507	99533750	99532507	ID=MsaG040368
Chr7	mRNA	99532507	99533750	99532507	ID=MsaT040368.1;Parent=MsaG040368
Chr7	exon	99532507	99532920	99532507	ID=MsaT040368.1.exon3;Parent=MsaT040368.1
Chr7	CDS	99532507	99532920	99532507	ID=cds.MsaT040368.1;Parent=MsaT040368.1
Chr7	exon	99533275	99533482	99533275	ID=MsaT040368.1.exon2;Parent=MsaT040368.1
Chr7	CDS	99533275	99533482	99533275	ID=cds.MsaT040368.1;Parent=MsaT040368.1
Chr7	exon	99533617	99533750	99533617	ID=MsaT040368.1.exon1;Parent=MsaT040368.1
Chr7	CDS	99533617	99533750	99533617	ID=cds.MsaT040368.1;Parent=MsaT040368.1

Gene Sequence

>MsaT040368.1

ATGGAAGCAATTGCGGCCATGGATGTCGAGGAACAACGACCTTTTCCCATACCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCTATCCAAACTAATTTCGGTGACGATTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTTCAATGGCGGTTTCACTTTCGACGAACGCAGTGAAACTGTATTCACCAGTGGTGGGTCAATATTATGGAGAGTGCAAGGGTCACACTGCAACTATCAATCAGATTTTGTTTTCGGGTCATTCTAATCCCAATATTCTAAGCTCTTGTTCTTCAGATGGTACTATCAGGACTTGGGACACAAGAACATTTCAACAGGTTTCTATTATCAATGCAAATAGGCCCATGATCTCTTTGATGATGAATGTTGAGAAAAAGAACATGAAGAAGGCTGACAGTAATGAAGAATCCGAGAAGCCCAACTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTCATTTTTCAAGTTCCATCCGTGGGTCATACTCACACGGTCCTCTCAGACCTTCGACTCATATTAGAGTTTCATCAAGAATCGATTATCAACCTGACATATGCAAAGACTTCAAGGAGACCGGGTATTGTGGCTACGGCGATTCATGCAAGTTTCTTCACGACCGAGGCGACTACAAGTCCGGGTGGCAGTTGGACAAAGAATGGAATGAAGCCGAGAAGAGGAGGGTGCGCTGA

Protein sequence

>MsaT040368.1

MEAIAAMDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPVVGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINANRPMISLMMNVEKKNMKKADSNEESEKPNFHFESSKEIQVQHDSKATATLETETHFSSSIRGSYSHGPLRPSTHIRVSSRIDYQPDICKDFKETGYCGYGDSCKFLHDRGDYKSGWQLDKEWNEAEKRRVR*