AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040398

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040398 MtrunA17_Chr7g0269831 86.933 375 22 6 1 368 1 355 0.0 608
MsaG040398 MtrunA17_Chr1g0194951 47.074 393 159 9 1 368 1 369 2.51e-101 304
MsaG040398 MtrunA17_Chr4g0068061 60.335 179 67 2 1 179 1 175 3.23e-71 226
MsaG040398 MtrunA17_Chr7g0275911 71.552 116 33 0 1 116 1 116 8.23e-61 196
MsaG040398 MtrunA17_Chr8g0346561 71.552 116 33 0 1 116 1 116 1.19e-59 194
MsaG040398 MtrunA17_Chr4g0070641 63.433 134 49 0 1 134 1 134 6.48e-59 188
MsaG040398 MtrunA17_Chr1g0167661 64.394 132 47 0 1 132 1 132 1.17e-58 191
MsaG040398 MtrunA17_Chr4g0070611 63.433 134 49 0 1 134 1 134 2.32e-58 191
MsaG040398 MtrunA17_Chr1g0167691 69.828 116 35 0 1 116 1 116 3.82e-57 186
MsaG040398 MtrunA17_Chr3g0131121 69.492 118 36 0 1 118 1 118 4.15e-57 188
MsaG040398 MtrunA17_Chr4g0037141 69.828 116 35 0 1 116 1 116 6.87e-57 187
MsaG040398 MtrunA17_Chr1g0203411 67.241 116 38 0 1 116 1 116 1.85e-56 186
MsaG040398 MtrunA17_Chr1g0187761 68.966 116 36 0 1 116 1 116 2.43e-56 184
MsaG040398 MtrunA17_Chr3g0121241 68.750 112 35 0 5 116 35 146 2.96e-55 183
MsaG040398 MtrunA17_Chr8g0385321 62.879 132 49 0 1 132 1 132 6.61e-55 182
MsaG040398 MtrunA17_Chr4g0039971 67.241 116 38 0 1 116 2 117 1.05e-54 183
MsaG040398 MtrunA17_Chr3g0110351 67.241 116 38 0 1 116 1 116 2.75e-54 181
MsaG040398 MtrunA17_Chr7g0217741 67.241 116 38 0 1 116 1 116 4.69e-54 180
MsaG040398 MtrunA17_Chr5g0434571 67.241 116 38 0 1 116 37 152 7.50e-54 181
MsaG040398 MtrunA17_Chr7g0261281 64.655 116 41 0 1 116 1 116 1.40e-53 178
MsaG040398 MtrunA17_Chr3g0115821 64.655 116 41 0 1 116 1 116 1.74e-53 180
MsaG040398 MtrunA17_Chr4g0042671 67.241 116 38 0 1 116 1 116 1.98e-53 181
MsaG040398 MtrunA17_Chr7g0274581 62.931 116 43 0 1 116 1 116 2.22e-53 175
MsaG040398 MtrunA17_Chr6g0453471 65.517 116 40 0 1 116 1 116 7.45e-53 179
MsaG040398 MtrunA17_Chr8g0349261 66.949 118 37 2 1 116 1 118 7.52e-53 177
MsaG040398 MtrunA17_Chr2g0281071 65.812 117 39 1 1 116 1 117 3.01e-52 177
MsaG040398 MtrunA17_Chr2g0323411 64.655 116 41 0 1 116 1 116 3.34e-52 176
MsaG040398 MtrunA17_Chr2g0294811 81.522 92 17 0 1 92 1 92 3.58e-52 169
MsaG040398 MtrunA17_Chr4g0060721 63.793 116 42 0 1 116 2 117 1.44e-51 174
MsaG040398 MtrunA17_Chr4g0048511 65.812 117 39 1 1 116 1 117 2.20e-51 175
MsaG040398 MtrunA17_Chr7g0228891 58.779 131 54 0 1 131 1 131 7.05e-51 171
MsaG040398 MtrunA17_Chr4g0057031 62.931 116 43 0 1 116 1 116 1.78e-50 170
MsaG040398 MtrunA17_Chr7g0254411 59.016 122 50 0 1 122 1 122 4.69e-50 171
MsaG040398 MtrunA17_Chr5g0435101 59.829 117 47 0 3 119 2 118 1.17e-49 166
MsaG040398 MtrunA17_Chr3g0092401 55.556 135 59 1 1 135 2 135 1.19e-49 169
MsaG040398 MtrunA17_Chr5g0410961 61.207 116 45 0 1 116 1 116 1.25e-49 170
MsaG040398 MtrunA17_Chr3g0103281 62.931 116 43 0 1 116 1 116 1.98e-49 169
MsaG040398 MtrunA17_Chr2g0330041 52.143 140 67 0 1 140 1 140 3.99e-48 167
MsaG040398 MtrunA17_Chr5g0395281 60.345 116 46 0 1 116 1 116 4.26e-48 165
MsaG040398 MtrunA17_Chr1g0193371 50.955 157 77 0 1 157 1 157 9.00e-48 166
MsaG040398 MtrunA17_Chr8g0342541 52.817 142 58 1 1 133 1 142 1.10e-47 165
MsaG040398 MtrunA17_Chr1g0193801 63.793 116 42 0 1 116 1 116 3.31e-47 164
MsaG040398 MtrunA17_Chr7g0217221 58.621 116 48 0 1 116 1 116 3.53e-47 161
MsaG040398 MtrunA17_Chr4g0022931 52.349 149 67 2 1 145 1 149 3.74e-47 161
MsaG040398 MtrunA17_Chr7g0270891 62.931 116 43 0 1 116 1 116 8.70e-47 163
MsaG040398 MtrunA17_Chr2g0311221 63.636 110 40 0 2 111 4 113 1.04e-46 162
MsaG040398 MtrunA17_Chr4g0022891 62.500 112 42 0 1 112 1 112 1.41e-46 159
MsaG040398 MtrunA17_Chr8g0342521 60.169 118 47 0 1 118 1 118 1.67e-46 162
MsaG040398 MtrunA17_Chr4g0058631 53.147 143 67 0 1 143 1 143 5.19e-46 160
MsaG040398 MtrunA17_Chr4g0044421 50.676 148 71 2 3 149 2 148 1.90e-45 154
MsaG040398 MtrunA17_Chr1g0151941 55.462 119 52 1 1 118 1 119 1.99e-45 156
MsaG040398 MtrunA17_Chr2g0323351 59.483 116 47 0 1 116 1 116 2.33e-45 156
MsaG040398 MtrunA17_Chr8g0387421 56.897 116 50 0 1 116 1 116 3.97e-45 157
MsaG040398 MtrunA17_Chr6g0453211 58.559 111 46 0 1 111 1 111 4.11e-45 157
MsaG040398 MtrunA17_Chr4g0022901 58.974 117 47 1 1 116 1 117 6.69e-45 155
MsaG040398 MtrunA17_Chr5g0397231 60.000 110 44 0 1 110 1 110 8.70e-45 157
MsaG040398 MtrunA17_Chr3g0117091 61.207 116 45 0 1 116 1 116 1.01e-44 157
MsaG040398 MtrunA17_Chr5g0400821 58.120 117 48 1 1 116 1 117 1.04e-44 156
MsaG040398 MtrunA17_Chr4g0022881 52.448 143 66 1 1 143 1 141 1.07e-44 154
MsaG040398 MtrunA17_Chr2g0309911 58.475 118 48 1 1 118 1 117 1.54e-44 155
MsaG040398 MtrunA17_Chr7g0271241 65.138 109 38 0 1 109 1 109 1.69e-44 157
MsaG040398 MtrunA17_Chr1g0152011 58.120 117 48 1 1 116 1 117 1.69e-44 156
MsaG040398 MtrunA17_Chr4g0022911 56.410 117 50 1 1 116 1 117 1.70e-44 155
MsaG040398 MtrunA17_Chr8g0342481 52.206 136 63 2 1 135 1 135 2.10e-44 157
MsaG040398 MtrunA17_Chr4g0028311 55.372 121 53 1 1 120 1 121 3.67e-44 155
MsaG040398 MtrunA17_Chr1g0211161 60.526 114 45 0 3 116 4 117 5.31e-44 152
MsaG040398 MtrunA17_Chr2g0327351 60.360 111 43 1 1 110 1 111 5.58e-44 154
MsaG040398 MtrunA17_Chr7g0264641 55.833 120 52 1 1 119 1 120 5.74e-44 153
MsaG040398 MtrunA17_Chr6g0452271 56.034 116 51 0 1 116 1 116 1.34e-43 154
MsaG040398 MtrunA17_Chr3g0135311 55.085 118 52 1 1 117 1 118 2.34e-43 153
MsaG040398 MtrunA17_Chr4g0055981 60.185 108 43 0 9 116 52 159 7.24e-43 149
MsaG040398 MtrunA17_Chr8g0343831 62.136 103 39 0 14 116 10 112 9.94e-43 149
MsaG040398 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 1.06e-42 152
MsaG040398 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 1.18e-42 150
MsaG040398 MtrunA17_Chr7g0228231 60.952 105 41 0 12 116 14 118 2.32e-42 147
MsaG040398 MtrunA17_Chr1g0186061 64.078 103 37 0 13 115 21 123 3.10e-42 148
MsaG040398 MtrunA17_Chr6g0450101 55.932 118 50 1 1 116 1 118 5.58e-42 145
MsaG040398 MtrunA17_Chr8g0354661 61.321 106 41 0 10 115 35 140 8.17e-42 153
MsaG040398 MtrunA17_Chr1g0168661 63.462 104 38 0 13 116 22 125 8.78e-42 147
MsaG040398 MtrunA17_Chr6g0487491 47.586 145 56 3 1 125 1 145 1.19e-41 146
MsaG040398 MtrunA17_Chr2g0328771 56.637 113 49 0 12 124 20 132 2.54e-41 147
MsaG040398 MtrunA17_Chr3g0088461 60.185 108 43 0 9 116 19 126 6.48e-41 147
MsaG040398 MtrunA17_Chr1g0194291 55.357 112 50 0 9 120 18 129 1.57e-40 144
MsaG040398 MtrunA17_Chr4g0032401 60.000 105 42 0 12 116 17 121 1.04e-39 143
MsaG040398 MtrunA17_Chr1g0209661 56.190 105 46 0 12 116 27 131 1.48e-39 142
MsaG040398 MtrunA17_Chr7g0240821 49.254 134 66 1 17 148 6 139 2.39e-39 139
MsaG040398 MtrunA17_Chr3g0099131 60.377 106 42 0 10 115 39 144 2.48e-39 146
MsaG040398 MtrunA17_Chr3g0080861 57.009 107 46 0 10 116 35 141 2.63e-39 146
MsaG040398 MtrunA17_Chr1g0203441 56.410 117 50 1 1 116 1 117 9.46e-39 139
MsaG040398 MtrunA17_Chr2g0322521 59.813 107 43 0 9 115 26 132 8.31e-38 140
MsaG040398 MtrunA17_Chr5g0417821 57.944 107 45 0 10 116 5 111 1.23e-37 137
MsaG040398 MtrunA17_Chr1g0194301 43.421 152 76 2 12 153 33 184 4.24e-37 135
MsaG040398 MtrunA17_Chr7g0220341 54.955 111 48 1 10 118 23 133 5.39e-37 134
MsaG040398 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 7.28e-37 128
MsaG040398 MtrunA17_Chr6g0470971 55.357 112 50 0 4 115 6 117 1.06e-36 134
MsaG040398 MtrunA17_Chr5g0434831 42.424 165 92 2 11 175 6 167 1.19e-36 131
MsaG040398 MtrunA17_Chr1g0154031 57.692 104 44 0 12 115 76 179 1.36e-36 137
MsaG040398 MtrunA17_Chr5g0434911 50.893 112 55 0 7 118 16 127 5.50e-36 132
MsaG040398 MtrunA17_Chr1g0180391 59.048 105 43 0 12 116 19 123 6.25e-36 130
MsaG040398 MtrunA17_Chr5g0434931 50.926 108 53 0 11 118 34 141 1.20e-35 131
MsaG040398 MtrunA17_Chr1g0192411 58.000 100 42 0 10 109 10 109 1.40e-35 134
MsaG040398 MtrunA17_Chr7g0228991 51.852 108 52 0 11 118 28 135 1.08e-34 129
MsaG040398 MtrunA17_Chr4g0068921 56.311 103 45 0 12 114 24 126 2.71e-34 125
MsaG040398 MtrunA17_Chr5g0434841 40.606 165 95 2 11 175 19 180 4.86e-34 128
MsaG040398 MtrunA17_Chr2g0293911 53.211 109 51 0 8 116 20 128 8.04e-34 127
MsaG040398 MtrunA17_Chr8g0360111 52.427 103 49 0 11 113 24 126 8.95e-34 125
MsaG040398 MtrunA17_Chr5g0440781 53.535 99 45 1 13 110 13 111 9.93e-33 120
MsaG040398 MtrunA17_Chr8g0342531 39.241 158 87 2 1 149 1 158 1.26e-32 120
MsaG040398 MtrunA17_Chr5g0440761 53.535 99 45 1 13 110 13 111 3.60e-32 121
MsaG040398 MtrunA17_Chr5g0441141 53.535 99 45 1 13 110 13 111 4.85e-32 121
MsaG040398 MtrunA17_Chr2g0327821 50.476 105 52 0 12 116 6 110 1.33e-31 119
MsaG040398 MtrunA17_Chr7g0247131 64.474 76 27 0 44 119 10 85 1.92e-31 120
MsaG040398 MtrunA17_Chr4g0030881 50.000 110 48 1 13 115 8 117 2.00e-31 119
MsaG040398 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.84e-30 112
MsaG040398 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 2.55e-30 112
MsaG040398 MtrunA17_Chr3g0099141 57.471 87 37 0 8 94 36 122 1.17e-29 111
MsaG040398 MtrunA17_Chr5g0441131 50.980 102 49 1 10 110 7 108 1.82e-29 112
MsaG040398 MtrunA17_Chr8g0334881 50.000 104 51 1 12 114 10 113 4.44e-29 114
MsaG040398 MtrunA17_Chr4g0013361 48.148 108 55 1 8 114 6 113 5.48e-29 114
MsaG040398 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 1.36e-28 108
MsaG040398 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 2.08e-28 108
MsaG040398 MtrunA17_Chr5g0395221 53.409 88 41 0 1 88 1 88 9.10e-28 104
MsaG040398 MtrunA17_Chr4g0053431 52.294 109 51 1 14 122 5 112 1.89e-27 109
MsaG040398 MtrunA17_Chr3g0133601 50.485 103 50 1 14 116 37 138 1.00e-25 103
MsaG040398 MtrunA17_Chr3g0117511 38.816 152 90 3 8 158 177 326 1.70e-24 103
MsaG040398 MtrunA17_Chr4g0008551 51.456 103 47 2 14 115 38 138 3.53e-24 102
MsaG040398 MtrunA17_Chr5g0429661 48.333 120 58 3 12 130 120 236 3.63e-24 102
MsaG040398 MtrunA17_Chr5g0401731 47.170 106 55 1 14 119 15 119 4.85e-24 100
MsaG040398 MtrunA17_Chr6g0454921 44.167 120 57 2 14 124 15 133 6.42e-24 98.2
MsaG040398 MtrunA17_Chr4g0058991 43.333 120 64 3 8 126 203 319 2.85e-23 100
MsaG040398 MtrunA17_Chr5g0425591 50.588 85 41 1 10 93 7 91 2.96e-23 92.8
MsaG040398 MtrunA17_Chr5g0437321 49.495 99 49 1 14 112 19 116 7.82e-23 97.1
MsaG040398 MtrunA17_Chr7g0229101 59.420 69 28 0 44 112 4 72 8.42e-23 95.1
MsaG040398 MtrunA17_Chr7g0229131 52.055 73 35 0 44 116 4 76 9.09e-22 91.3
MsaG040398 MtrunA17_Chr6g0480581 42.574 101 57 1 14 114 4 103 1.50e-21 92.4
MsaG040398 MtrunA17_Chr5g0434901 55.385 65 29 0 48 112 9 73 8.13e-21 87.0
MsaG040398 MtrunA17_Chr6g0453751 47.826 92 39 2 11 93 19 110 2.09e-20 86.3
MsaG040398 MtrunA17_Chr3g0139671 36.154 130 80 2 12 139 83 211 2.33e-20 92.8
MsaG040398 MtrunA17_Chr1g0157731 34.091 132 84 2 12 141 89 219 3.12e-20 92.4
MsaG040398 MtrunA17_Chr3g0093811 48.810 84 40 1 36 116 3 86 5.18e-20 88.6
MsaG040398 MtrunA17_Chr7g0238631 43.478 115 56 2 12 122 111 220 5.33e-20 91.7
MsaG040398 MtrunA17_Chr7g0238631 38.000 100 60 2 14 112 61 159 4.19e-11 64.3
MsaG040398 MtrunA17_Chr6g0460661 38.542 96 58 1 14 109 16 110 1.97e-19 84.3
MsaG040398 MtrunA17_Chr7g0247141 70.833 48 13 1 1 47 1 48 3.08e-18 78.2
MsaG040398 MtrunA17_Chr4g0042501 40.351 114 62 3 14 126 105 213 3.34e-18 85.5
MsaG040398 MtrunA17_Chr7g0228531 41.509 106 60 2 10 115 216 319 6.23e-18 84.7
MsaG040398 MtrunA17_Chr5g0397841 45.918 98 52 1 12 109 108 204 8.44e-18 84.7
MsaG040398 MtrunA17_Chr7g0238651 39.175 97 57 1 14 108 7 103 1.15e-17 83.2
MsaG040398 MtrunA17_Chr3g0125801 44.660 103 54 2 14 115 16 116 1.54e-17 82.0
MsaG040398 MtrunA17_Chr5g0417621 40.385 104 59 2 14 116 134 235 2.01e-17 83.2
MsaG040398 MtrunA17_Chr7g0228481 41.584 101 57 2 10 110 216 314 2.05e-16 80.1
MsaG040398 MtrunA17_Chr7g0228401 45.349 86 46 1 25 110 290 374 2.28e-16 80.5
MsaG040398 MtrunA17_Chr7g0233061 38.835 103 48 3 14 110 180 273 2.60e-16 79.3
MsaG040398 MtrunA17_Chr6g0460671 39.216 102 61 1 14 115 99 199 4.10e-16 78.6
MsaG040398 MtrunA17_Chr1g0193901 50.000 84 40 2 12 93 11 94 4.32e-16 73.6
MsaG040398 MtrunA17_Chr1g0193891 50.000 84 40 2 12 93 11 94 4.32e-16 73.6
MsaG040398 MtrunA17_Chr1g0193871 50.000 84 40 2 12 93 11 94 4.32e-16 73.6
MsaG040398 MtrunA17_Chr1g0193881 50.000 84 40 2 12 93 11 94 4.32e-16 73.6
MsaG040398 MtrunA17_Chr7g0254261 36.364 132 76 3 9 136 80 207 1.14e-15 77.4
MsaG040398 MtrunA17_Chr1g0177901 43.678 87 48 1 24 110 4 89 2.13e-15 74.3
MsaG040398 MtrunA17_Chr5g0416341 37.234 94 58 1 17 110 29 121 9.04e-14 72.4
MsaG040398 MtrunA17_Chr5g0434871 55.556 45 20 0 74 118 2 46 6.68e-13 63.5
MsaG040398 MtrunA17_Chr8g0362231 34.043 94 61 1 17 110 25 117 8.37e-13 69.3
MsaG040398 MtrunA17_Chr2g0294821 87.097 31 4 0 89 119 5 35 3.91e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040398 AT5G49330.1 67.052 173 49 1 1 165 1 173 1.72e-76 239
MsaG040398 AT2G47460.1 41.162 396 178 17 1 368 1 369 3.26e-74 235
MsaG040398 AT3G62610.1 39.900 401 148 16 1 368 1 341 7.16e-67 215
MsaG040398 AT4G38620.1 65.649 131 45 0 1 131 1 131 3.35e-58 191
MsaG040398 AT4G09460.1 60.284 141 56 0 1 141 1 141 4.27e-58 189
MsaG040398 AT2G16720.1 53.846 169 73 1 1 164 1 169 4.46e-58 190
MsaG040398 AT1G35515.1 71.552 116 33 0 1 116 1 116 5.79e-58 187
MsaG040398 AT3G61250.1 52.903 155 68 1 1 155 1 150 1.13e-56 187
MsaG040398 AT1G22640.1 62.791 129 47 1 1 129 1 128 4.44e-56 184
MsaG040398 AT2G31180.1 57.823 147 58 2 1 143 1 147 2.05e-55 182
MsaG040398 AT4G34990.1 68.966 116 36 0 1 116 1 116 4.69e-55 182
MsaG040398 AT3G23250.1 54.730 148 66 1 1 147 1 148 1.42e-54 181
MsaG040398 AT5G15310.4 56.835 139 60 0 1 139 1 139 2.98e-54 179
MsaG040398 AT3G02940.2 64.655 116 41 0 1 116 1 116 4.48e-54 181
MsaG040398 AT5G15310.1 65.517 116 40 0 1 116 1 116 8.35e-54 181
MsaG040398 AT3G02940.1 64.655 116 41 0 1 116 1 116 9.34e-54 180
MsaG040398 AT3G02940.3 64.655 116 41 0 1 116 1 116 9.34e-54 180
MsaG040398 AT3G13540.1 67.257 113 37 0 4 116 15 127 9.71e-54 178
MsaG040398 AT5G15310.2 65.517 116 40 0 1 116 1 116 1.13e-53 180
MsaG040398 AT4G28110.1 63.793 116 42 0 1 116 1 116 1.23e-53 179
MsaG040398 AT3G01140.2 65.517 116 40 0 1 116 1 116 2.10e-53 180
MsaG040398 AT4G21440.1 64.655 116 41 0 1 116 1 116 2.22e-53 180
MsaG040398 AT1G06180.1 64.957 117 41 0 1 117 1 117 2.65e-53 177
MsaG040398 AT5G16600.1 67.241 116 38 0 1 116 1 116 4.91e-53 179
MsaG040398 AT1G66230.1 65.517 116 40 0 1 116 1 116 4.97e-53 177
MsaG040398 AT1G16490.1 64.957 117 41 0 2 118 4 120 1.43e-52 176
MsaG040398 AT5G16770.4 64.655 116 41 0 1 116 1 116 1.50e-52 177
MsaG040398 AT5G16770.3 64.655 116 41 0 1 116 1 116 1.50e-52 177
MsaG040398 AT5G16770.1 64.655 116 41 0 1 116 1 116 2.61e-52 177
MsaG040398 AT5G16770.2 64.655 116 41 0 1 116 1 116 2.61e-52 177
MsaG040398 AT4G05100.1 64.957 117 40 1 1 116 1 117 1.00e-51 175
MsaG040398 AT1G79180.1 61.475 122 47 0 2 123 4 125 1.64e-51 174
MsaG040398 AT5G07690.1 65.789 114 39 0 1 114 1 114 5.97e-51 173
MsaG040398 AT1G34670.1 63.793 116 42 0 1 116 1 116 6.72e-51 174
MsaG040398 AT4G17785.2 65.812 117 39 1 1 116 1 117 6.78e-51 174
MsaG040398 AT4G17785.1 65.812 117 39 1 1 116 1 117 8.26e-51 174
MsaG040398 AT4G22680.1 62.931 116 43 0 1 116 1 116 1.11e-50 171
MsaG040398 AT5G61420.2 63.793 116 42 0 1 116 1 116 1.38e-50 173
MsaG040398 AT3G01140.1 64.602 113 40 0 4 116 47 159 2.43e-50 173
MsaG040398 AT1G74650.1 60.000 120 48 0 1 120 1 120 2.65e-50 171
MsaG040398 AT1G08810.1 61.207 116 45 0 1 116 1 116 3.14e-50 170
MsaG040398 AT5G65230.1 62.931 116 43 0 1 116 1 116 3.28e-50 171
MsaG040398 AT4G12350.1 62.931 116 43 0 1 116 1 116 1.68e-49 168
MsaG040398 AT5G62470.2 62.069 116 44 0 1 116 1 116 2.81e-49 169
MsaG040398 AT5G56110.1 63.793 116 42 0 1 116 1 116 7.08e-49 167
MsaG040398 AT3G47600.1 60.345 116 46 0 1 116 1 116 7.47e-49 168
MsaG040398 AT5G26660.1 64.655 116 41 0 1 116 1 116 2.00e-48 167
MsaG040398 AT5G10280.1 62.069 116 44 0 1 116 1 116 2.03e-48 167
MsaG040398 AT1G56160.1 61.739 115 44 0 2 116 4 118 2.35e-48 166
MsaG040398 AT5G07700.1 61.207 116 45 0 1 116 1 116 3.76e-48 166
MsaG040398 AT5G07700.2 61.207 116 45 0 1 116 1 116 3.76e-48 166
MsaG040398 AT4G01680.3 57.246 138 57 2 1 137 1 137 5.63e-48 163
MsaG040398 AT5G62470.1 62.069 116 43 1 1 116 1 115 6.65e-48 166
MsaG040398 AT5G14340.1 62.069 116 44 0 1 116 13 128 6.84e-48 164
MsaG040398 AT3G28910.1 61.207 116 45 0 1 116 1 116 7.85e-48 165
MsaG040398 AT1G09540.1 60.448 134 51 2 1 133 1 133 1.75e-47 165
MsaG040398 AT3G13890.2 58.475 118 49 0 1 118 1 118 2.03e-47 165
MsaG040398 AT5G60890.1 60.345 116 46 0 1 116 1 116 2.59e-47 162
MsaG040398 AT3G12820.1 61.404 114 44 0 3 116 5 118 3.22e-47 160
MsaG040398 AT4G01680.1 63.793 116 42 0 1 116 1 116 3.62e-47 163
MsaG040398 AT1G57560.2 63.793 116 42 0 1 116 1 116 9.23e-47 160
MsaG040398 AT1G57560.1 63.793 116 42 0 1 116 1 116 9.78e-47 162
MsaG040398 AT4G37780.1 55.645 124 54 1 1 123 1 124 2.29e-46 160
MsaG040398 AT1G18570.1 60.684 117 45 1 1 116 1 117 2.37e-46 162
MsaG040398 AT5G54230.1 61.207 116 45 0 1 116 1 116 3.51e-46 160
MsaG040398 AT1G74080.1 61.404 114 44 0 1 114 1 114 7.56e-46 160
MsaG040398 AT5G62320.1 49.342 152 70 1 2 146 3 154 9.99e-46 157
MsaG040398 AT1G63910.1 58.621 116 48 0 1 116 1 116 1.10e-45 160
MsaG040398 AT1G79180.2 49.032 155 46 1 2 123 4 158 4.04e-45 158
MsaG040398 AT3G12720.1 59.292 113 46 0 6 118 16 128 1.65e-44 155
MsaG040398 AT3G13890.1 54.331 127 49 1 1 118 1 127 2.84e-44 157
MsaG040398 AT5G14750.1 61.538 104 40 0 13 116 17 120 3.91e-44 151
MsaG040398 AT5G23000.1 58.120 117 48 1 1 116 1 117 4.35e-44 155
MsaG040398 AT3G49690.1 57.265 117 49 1 1 116 1 117 8.27e-44 154
MsaG040398 AT4G01680.2 57.812 128 42 1 1 116 1 128 9.70e-44 155
MsaG040398 AT2G36890.1 55.462 119 52 1 1 118 1 119 2.31e-43 152
MsaG040398 AT2G36890.2 55.462 119 52 1 1 118 42 160 2.63e-43 153
MsaG040398 AT5G65790.1 56.410 117 50 1 1 116 1 117 4.92e-43 154
MsaG040398 AT4G13480.1 61.017 118 43 1 13 130 7 121 5.01e-43 150
MsaG040398 AT5G57620.1 57.265 117 49 1 1 116 1 117 5.08e-43 152
MsaG040398 AT2G32460.1 61.111 108 42 0 8 115 14 121 1.58e-42 155
MsaG040398 AT2G32460.2 61.905 105 40 0 11 115 5 109 1.98e-42 154
MsaG040398 AT5G40330.1 58.654 104 43 0 13 116 13 116 2.20e-42 147
MsaG040398 AT5G35550.1 62.857 105 39 0 12 116 14 118 2.41e-42 149
MsaG040398 AT5G12870.1 61.905 105 40 0 12 116 18 122 2.99e-42 149
MsaG040398 AT3G24310.1 62.963 108 40 0 11 118 17 124 3.12e-42 149
MsaG040398 AT3G08500.1 61.111 108 42 0 9 116 27 134 8.00e-42 149
MsaG040398 AT3G28470.1 58.182 110 46 0 1 110 1 110 8.47e-42 149
MsaG040398 AT5G55020.1 61.905 105 40 0 10 114 24 128 2.57e-41 152
MsaG040398 AT5G40350.1 57.522 113 48 0 12 124 17 129 3.34e-41 144
MsaG040398 AT3G27810.1 60.000 105 42 0 12 116 20 124 3.75e-41 144
MsaG040398 AT1G74430.1 56.897 116 50 0 1 116 1 116 1.26e-40 144
MsaG040398 AT3G01530.1 59.048 105 43 0 12 116 25 129 1.36e-40 142
MsaG040398 AT5G06100.1 59.048 105 43 0 11 115 31 135 3.31e-40 148
MsaG040398 AT3G27920.1 48.485 132 68 0 13 144 15 146 3.57e-40 142
MsaG040398 AT3G11440.2 61.538 104 40 0 12 115 41 144 4.54e-40 147
MsaG040398 AT5G52600.1 57.143 112 48 0 9 120 9 120 4.58e-40 141
MsaG040398 AT3G30210.1 59.615 104 42 0 11 114 26 129 1.01e-39 142
MsaG040398 AT5G06100.5 59.048 105 43 0 11 115 31 135 1.20e-39 147
MsaG040398 AT5G06100.2 59.048 105 43 0 11 115 31 135 1.20e-39 147
MsaG040398 AT5G06100.3 59.048 105 43 0 11 115 31 135 1.20e-39 147
MsaG040398 AT5G06100.4 59.048 105 43 0 11 115 31 135 1.20e-39 147
MsaG040398 AT3G11440.3 61.538 104 40 0 12 115 41 144 2.25e-39 147
MsaG040398 AT3G11440.4 61.538 104 40 0 12 115 41 144 2.25e-39 147
MsaG040398 AT3G11440.1 61.538 104 40 0 12 115 41 144 2.25e-39 147
MsaG040398 AT1G48000.1 56.075 107 47 0 10 116 30 136 2.31e-38 137
MsaG040398 AT1G66370.1 53.913 115 49 1 1 115 1 111 2.37e-38 138
MsaG040398 AT1G25340.1 50.820 122 57 1 13 134 19 137 3.53e-38 138
MsaG040398 AT1G68320.1 55.238 105 47 0 12 116 19 123 5.04e-38 138
MsaG040398 AT4G26930.1 46.809 141 69 1 10 144 17 157 5.46e-38 140
MsaG040398 AT1G18710.1 52.586 116 55 0 1 116 1 116 6.24e-38 137
MsaG040398 AT2G47190.1 50.806 124 60 1 8 131 16 138 1.03e-37 137
MsaG040398 AT1G66380.1 59.048 105 43 0 11 115 7 111 7.03e-37 130
MsaG040398 AT4G25560.1 60.194 103 41 0 13 115 11 113 1.14e-36 134
MsaG040398 AT1G56650.1 58.095 105 44 0 11 115 7 111 4.22e-36 132
MsaG040398 AT3G06490.1 57.798 109 46 0 8 116 15 123 1.18e-35 132
MsaG040398 AT2G26960.1 52.830 106 50 0 9 114 17 122 8.32e-35 132
MsaG040398 AT1G66390.1 57.143 105 45 0 11 115 7 111 1.14e-34 128
MsaG040398 AT5G52260.1 57.282 103 44 0 13 115 13 115 2.64e-34 127
MsaG040398 AT3G48920.1 53.846 104 48 0 13 116 19 122 4.54e-34 127
MsaG040398 AT1G25340.2 48.361 122 55 2 13 134 19 132 6.36e-34 127
MsaG040398 AT1G25340.3 48.361 122 55 2 13 134 19 132 1.03e-33 127
MsaG040398 AT5G59780.3 52.381 105 50 0 12 116 8 112 1.18e-33 125
MsaG040398 AT3G46130.1 52.830 106 50 0 11 116 8 113 1.34e-33 125
MsaG040398 AT3G53200.1 49.624 133 57 2 12 134 9 141 2.42e-33 124
MsaG040398 AT5G49620.1 52.212 113 54 0 8 120 22 134 5.95e-33 125
MsaG040398 AT5G26660.2 72.222 72 20 0 45 116 14 85 1.14e-30 119
MsaG040398 AT5G14750.3 62.338 77 26 1 40 116 13 86 5.99e-30 113
MsaG040398 AT3G60460.1 48.624 109 55 1 7 114 6 114 1.52e-29 115
MsaG040398 AT5G49620.2 46.457 127 54 1 8 120 22 148 2.68e-29 115
MsaG040398 AT3G12820.2 65.714 70 24 0 47 116 1 70 9.09e-29 110
MsaG040398 AT5G35550.2 69.444 72 22 0 45 116 50 121 9.13e-29 112
MsaG040398 AT3G27810.2 63.889 72 26 0 45 116 4 75 1.58e-28 109
MsaG040398 AT5G40350.2 58.537 82 34 0 43 124 3 84 2.72e-28 108
MsaG040398 AT2G26950.1 46.226 106 57 0 9 114 13 118 4.84e-28 113
MsaG040398 AT3G47600.2 62.500 72 27 0 45 116 39 110 6.69e-26 106
MsaG040398 AT5G59780.2 61.111 72 28 0 45 116 20 91 7.04e-26 103
MsaG040398 AT3G46130.3 60.274 73 29 0 44 116 9 81 7.90e-26 103
MsaG040398 AT3G53200.2 66.197 71 24 0 45 115 9 79 8.72e-26 103
MsaG040398 AT3G46130.4 61.111 72 28 0 45 116 20 91 1.86e-25 103
MsaG040398 AT2G39880.1 52.830 106 41 2 14 115 50 150 2.10e-24 103
MsaG040398 AT4G18770.1 43.802 121 62 3 8 126 211 327 2.27e-24 103
MsaG040398 AT3G09230.1 47.273 110 49 2 14 119 55 159 3.88e-24 102
MsaG040398 AT3G27785.1 45.217 115 57 3 8 120 183 293 9.69e-24 102
MsaG040398 AT3G55730.1 51.961 102 48 1 14 115 56 156 1.17e-23 101
MsaG040398 AT1G66380.3 61.111 72 28 0 44 115 7 78 1.89e-23 94.0
MsaG040398 AT5G40360.1 43.119 109 60 2 12 120 156 262 3.29e-23 99.8
MsaG040398 AT4G37260.1 46.018 113 59 2 14 126 13 123 5.31e-23 98.6
MsaG040398 AT1G22640.3 59.722 72 28 1 58 129 1 71 7.96e-23 95.1
MsaG040398 AT1G18960.1 44.660 103 54 2 14 116 10 109 9.51e-23 97.4
MsaG040398 AT2G23290.1 48.039 102 52 1 14 115 13 113 1.80e-22 96.7
MsaG040398 AT5G67300.1 47.273 110 55 2 14 121 6 114 2.34e-22 96.3
MsaG040398 AT5G58850.1 47.619 105 52 2 12 115 103 205 3.77e-22 97.4
MsaG040398 AT3G50060.1 48.039 102 52 1 14 115 6 106 5.92e-22 95.1
MsaG040398 AT1G66380.2 52.381 84 40 0 11 94 7 90 6.79e-22 90.1
MsaG040398 AT5G02320.3 43.478 115 56 2 12 122 65 174 3.17e-21 95.1
MsaG040398 AT5G02320.1 43.478 115 56 2 12 122 125 234 3.33e-21 95.5
MsaG040398 AT5G02320.2 43.478 115 56 2 12 122 125 234 3.33e-21 95.5
MsaG040398 AT3G09370.1 46.296 108 49 2 12 115 128 230 3.90e-21 95.1
MsaG040398 AT3G09370.2 46.296 108 49 2 12 115 133 235 3.97e-21 95.1
MsaG040398 AT3G09370.3 46.296 108 49 2 12 115 141 243 5.71e-21 94.7
MsaG040398 AT1G69560.1 36.301 146 81 4 9 147 102 242 7.18e-21 92.4
MsaG040398 AT1G69560.2 36.301 146 81 4 9 147 118 258 9.54e-21 92.4
MsaG040398 AT5G14750.4 57.627 59 25 0 58 116 1 59 2.44e-20 86.7
MsaG040398 AT5G14750.2 57.627 59 25 0 58 116 1 59 2.44e-20 86.7
MsaG040398 AT5G11050.1 45.631 103 53 2 14 115 105 205 2.49e-20 92.0
MsaG040398 AT5G11510.3 40.000 110 61 2 12 119 79 185 5.12e-20 92.4
MsaG040398 AT5G11510.1 40.000 110 61 2 12 119 79 185 5.12e-20 92.4
MsaG040398 AT5G11510.4 40.000 110 61 2 12 119 79 185 5.12e-20 92.4
MsaG040398 AT5G11510.2 40.000 110 61 2 12 119 79 185 8.51e-20 91.7
MsaG040398 AT5G11510.5 40.000 110 61 2 12 119 79 185 8.92e-20 91.7
MsaG040398 AT3G23250.2 45.055 91 49 1 58 147 1 91 1.18e-19 87.0
MsaG040398 AT1G17950.1 41.176 102 59 1 14 115 5 105 1.39e-19 87.4
MsaG040398 AT1G71030.2 50.000 76 38 0 51 126 5 80 4.55e-19 84.3
MsaG040398 AT1G71030.1 50.000 76 38 0 51 126 19 94 5.19e-19 84.7
MsaG040398 AT1G26780.2 39.655 116 64 3 12 126 96 206 2.20e-18 85.9
MsaG040398 AT1G26780.1 39.655 116 64 3 12 126 96 206 2.61e-18 84.3
MsaG040398 AT5G17800.1 39.806 103 61 1 14 116 93 194 3.25e-18 84.7
MsaG040398 AT4G32730.1 36.036 111 70 1 12 122 85 194 3.40e-18 86.7
MsaG040398 AT4G32730.5 36.036 111 70 1 12 122 85 194 3.50e-18 86.7
MsaG040398 AT4G32730.4 36.036 111 70 1 12 122 85 194 3.50e-18 86.7
MsaG040398 AT4G32730.3 36.036 111 70 1 12 122 85 194 3.50e-18 86.7
MsaG040398 AT4G32730.2 36.036 111 70 1 12 122 85 194 3.50e-18 86.7
MsaG040398 AT3G29020.1 38.053 113 66 2 14 126 65 173 3.79e-18 83.2
MsaG040398 AT3G29020.2 38.053 113 66 2 14 126 67 175 4.85e-18 84.0
MsaG040398 AT2G25230.1 37.288 118 72 2 8 125 20 135 8.57e-18 82.0
MsaG040398 AT4G33450.1 34.286 140 83 3 3 139 13 146 1.65e-17 81.6
MsaG040398 AT4G00540.2 40.179 112 63 2 11 119 100 210 4.07e-17 82.4
MsaG040398 AT4G00540.1 40.179 112 63 2 11 119 98 208 5.04e-17 82.4
MsaG040398 AT1G73410.2 42.308 104 57 2 14 116 6 107 6.35e-17 79.0
MsaG040398 AT1G73410.1 42.308 104 57 2 14 116 6 107 6.43e-17 79.7
MsaG040398 AT2G37630.1 36.082 97 60 1 14 108 4 100 4.22e-16 79.3
MsaG040398 AT5G40430.1 36.296 135 81 4 7 139 47 178 1.14e-14 73.6
MsaG040398 AT2G02820.3 37.234 94 58 1 17 110 33 125 2.33e-14 73.9
MsaG040398 AT5G39700.1 35.294 102 65 1 15 116 57 157 2.78e-14 71.2
MsaG040398 AT2G02820.1 37.234 94 58 1 17 110 33 125 2.84e-14 74.3
MsaG040398 AT2G02820.2 37.234 94 58 1 17 110 33 125 2.99e-14 74.3
MsaG040398 AT4G25560.2 67.391 46 15 0 70 115 2 47 4.39e-14 71.2
MsaG040398 AT1G14350.2 32.759 116 77 1 17 132 28 142 5.09e-14 73.6
MsaG040398 AT1G14350.1 32.759 116 77 1 17 132 28 142 5.09e-14 73.6
MsaG040398 AT5G59780.1 55.319 47 21 0 70 116 1 47 6.18e-13 67.0
MsaG040398 AT3G46130.2 55.319 47 21 0 70 116 1 47 2.13e-12 65.9
MsaG040398 AT5G61420.1 69.444 36 11 0 81 116 2 37 4.37e-11 63.5
MsaG040398 AT1G74650.3 54.545 44 20 0 77 120 1 44 5.57e-11 62.8
MsaG040398 AT3G28910.2 62.500 40 15 0 77 116 1 40 5.82e-11 62.8

Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGGTAATTGCAACCTATT+TGG 0.105295 7:+99775430 None:intergenic
AGCAAAATGCTTTGGTTTCT+TGG 0.128450 7:-99774958 MsaT040398.1:CDS
TTGCAGCAGGTTCACTTCTT+TGG 0.173439 7:+99775542 None:intergenic
CCCCATTTGCCTTAACATAT+TGG 0.262757 7:+99777025 None:intergenic
CCCATTTGCCTTAACATATT+GGG 0.269618 7:+99777026 None:intergenic
ATGGTTATGGGCTCAGTAAA+TGG 0.270999 7:-99775478 MsaT040398.1:CDS
AGGCAAATGGGGAAGGTTCT+TGG 0.278979 7:-99777014 MsaT040398.1:CDS
GTCAAGATGCATGCTTCTTT+TGG 0.280452 7:-99776763 MsaT040398.1:CDS
AACTTCAAAGACTTCGGGTT+TGG 0.304668 7:-99775134 MsaT040398.1:CDS
TGCAGCAGGTTCACTTCTTT+GGG 0.310563 7:+99775543 None:intergenic
TGATATTATCATGGATACTT+TGG 0.310884 7:-99775308 MsaT040398.1:CDS
TCTTCAACTTCAAAGACTTC+GGG 0.340198 7:-99775139 MsaT040398.1:CDS
ACCCAATATGTTAAGGCAAA+TGG 0.344139 7:-99777027 MsaT040398.1:CDS
TGCACTAGAGAACGAGAAAA+TGG 0.352444 7:-99775497 MsaT040398.1:CDS
CCCAATATGTTAAGGCAAAT+GGG 0.355791 7:-99777026 MsaT040398.1:CDS
AGTTCTACCACCTTTACGTT+TGG 0.362051 7:+99775603 None:intergenic
AGAGAACGAGAAAATGGTTA+TGG 0.377024 7:-99775491 MsaT040398.1:CDS
ACGGTAATTGCAACCTATTT+GGG 0.383543 7:+99775431 None:intergenic
TCCTCAGAAGCAAAATGCTT+TGG 0.387350 7:-99774966 MsaT040398.1:CDS
GTTCTACCACCTTTACGTTT+GGG 0.399753 7:+99775604 None:intergenic
GACAAAGGCACCAACACAAA+TGG 0.402236 7:-99775223 MsaT040398.1:CDS
TTCTTCAACTTCAAAGACTT+CGG 0.422667 7:-99775140 MsaT040398.1:CDS
ATCTCGTTGTCTGTTCTGCC+TGG 0.428368 7:+99775748 None:intergenic
ATTTGAGAGCTGATCTCAAA+AGG 0.432934 7:-99776819 MsaT040398.1:CDS
TTTGGATGATAACTTGGATT+GGG 0.437238 7:-99775116 MsaT040398.1:CDS
CTCGTTCTCTAGTGCAGGGG+TGG 0.446834 7:+99775504 None:intergenic
GTAAAAGTTGTAGATTAAGA+TGG 0.447825 7:-99776849 MsaT040398.1:CDS
TTCGGGTTTGGATGATAACT+TGG 0.452649 7:-99775122 MsaT040398.1:CDS
TATAATTTGTTGATGTTCCT+CGG 0.454287 7:+99775680 None:intergenic
AAACATGCTAACTTGGTTGT+TGG 0.455589 7:-99775035 MsaT040398.1:CDS
TGAGAAAGTGGGTTTGAAGA+AGG 0.456681 7:-99777082 MsaT040398.1:CDS
TTTGAGAGCTGATCTCAAAA+GGG 0.462390 7:-99776818 MsaT040398.1:CDS
GAGAAAGTGGGTTTGAAGAA+GGG 0.470856 7:-99777081 MsaT040398.1:CDS
AGCTCCTTGTTGTGAGAAAG+TGG 0.474506 7:-99777094 MsaT040398.1:CDS
ACCAACACAAATGGAACAAA+GGG 0.476941 7:-99775214 MsaT040398.1:CDS
GAGAACGAGAAAATGGTTAT+GGG 0.478560 7:-99775490 MsaT040398.1:CDS
GCCCTTTGTTCCATTTGTGT+TGG 0.479392 7:+99775213 None:intergenic
TGGTTATGGGCTCAGTAAAT+GGG 0.483957 7:-99775477 MsaT040398.1:CDS
GGGAAATATTTCTTCTGAAG+AGG 0.485325 7:-99776797 MsaT040398.1:CDS
TGGCAAGTGACTTGCAATCA+AGG 0.485450 7:+99775768 None:intergenic
CCTTGTTCTAGTGGTGAAGA+TGG 0.485510 7:-99775454 MsaT040398.1:CDS
TTCTCTAGTGCAGGGGTGGG+TGG 0.491074 7:+99775508 None:intergenic
TCATTAATGACCTTCAGATC+TGG 0.498872 7:+99775352 None:intergenic
AAGATGAAAACATGCTAACT+TGG 0.500426 7:-99775042 MsaT040398.1:CDS
GTTGATTGTGACCGTATGTT+GGG 0.500866 7:-99775376 MsaT040398.1:CDS
TTGCAATTACCGTGCATTGA+CGG 0.501154 7:-99775421 MsaT040398.1:CDS
GTTTGGATGATAACTTGGAT+TGG 0.503745 7:-99775117 MsaT040398.1:CDS
TTGATTGCAAGTCACTTGCC+AGG 0.505909 7:-99775766 MsaT040398.1:CDS
GTGGTGAAGATGGCCCAAAT+AGG 0.508419 7:-99775444 MsaT040398.1:CDS
TATTATCATGGATACTTTGG+AGG 0.511480 7:-99775305 MsaT040398.1:CDS
GGTTGTTGGATGATGATCAA+TGG 0.513716 7:-99775021 MsaT040398.1:CDS
GAAAGGTCAATCGTTGTTGT+GGG 0.516251 7:-99775068 MsaT040398.1:CDS
TATCATGGATACTTTGGAGG+TGG 0.519349 7:-99775302 MsaT040398.1:CDS
GTTGTTGGATGATGATCAAT+GGG 0.519759 7:-99775020 MsaT040398.1:CDS
GGATGATGATCAATGGGAAA+AGG 0.520555 7:-99775014 MsaT040398.1:CDS
ATGCCATTGTTGAATCAGAA+AGG 0.524551 7:-99775085 MsaT040398.1:CDS
TCAACTATGATTCCTTCTGA+TGG 0.529241 7:+99775634 None:intergenic
AGAAAGGTCAATCGTTGTTG+TGG 0.533000 7:-99775069 MsaT040398.1:CDS
GATCTGAAGGTCATTAATGA+TGG 0.535184 7:-99775349 MsaT040398.1:CDS
GTAAATGGGCCTTGTTCTAG+TGG 0.541272 7:-99775463 MsaT040398.1:CDS
TGGGTTTGAAGAAGGGAAGA+TGG 0.549753 7:-99777074 MsaT040398.1:CDS
TCGTTCTCTAGTGCAGGGGT+GGG 0.551326 7:+99775505 None:intergenic
TTTGAAGGTTTGCTTAGATG+TGG 0.554593 7:-99776871 MsaT040398.1:intron
CACCAACACAAATGGAACAA+AGG 0.555866 7:-99775215 MsaT040398.1:CDS
ACTGGAACTCACACTTGAGT+AGG 0.564912 7:-99775717 MsaT040398.1:CDS
GAGATAGAGATTCCATCAGA+AGG 0.565117 7:-99775646 MsaT040398.1:CDS
TCAGATCTGGTCCCAACATA+CGG 0.570710 7:+99775365 None:intergenic
GGGAAGATGGACCGCAGAGG+AGG 0.573236 7:-99777061 MsaT040398.1:CDS
GATACACCTCCCAAACGTAA+AGG 0.576000 7:-99775613 MsaT040398.1:CDS
TATGTTAAGGCAAATGGGGA+AGG 0.579281 7:-99777021 MsaT040398.1:CDS
GGAAGTGTAACAATTGCAGC+AGG 0.585780 7:+99775529 None:intergenic
CAAATGGGGAAGGTTCTTGG+AGG 0.590009 7:-99777011 MsaT040398.1:CDS
AGTTGATTGTGACCGTATGT+TGG 0.594858 7:-99775377 MsaT040398.1:CDS
TGACCTTTCTGATTCAACAA+TGG 0.599595 7:+99775082 None:intergenic
CCATCTTCACCACTAGAACA+AGG 0.602002 7:+99775454 None:intergenic
AGAAAGTAATGATGAAAATG+TGG 0.603870 7:-99775269 MsaT040398.1:CDS
CCAATATGTTAAGGCAAATG+GGG 0.604912 7:-99777025 MsaT040398.1:CDS
AAGGTGGTAGAACTAGTCGA+TGG 0.608334 7:-99775594 MsaT040398.1:CDS
GACGAATCAATGTTCGAATG+AGG 0.609950 7:-99775170 MsaT040398.1:CDS
GCTCCTTGTTGTGAGAAAGT+GGG 0.610413 7:-99777093 MsaT040398.1:CDS
AGGAAAGTTTACAGCTTCCG+AGG 0.615687 7:-99775697 MsaT040398.1:CDS
TTGAGAGCTGATCTCAAAAG+GGG 0.619723 7:-99776817 MsaT040398.1:CDS
CTACCACCTTTACGTTTGGG+AGG 0.625375 7:+99775607 None:intergenic
GGTTGTGATTAATGAAAGAG+TGG 0.625942 7:-99775248 MsaT040398.1:CDS
AGGTGGTAGAACTAGTCGAT+GGG 0.631157 7:-99775593 MsaT040398.1:CDS
AAACCCACTTTCTCACAACA+AGG 0.632503 7:+99777090 None:intergenic
CAAAATTTCATCCTCCTCTG+CGG 0.639762 7:+99777050 None:intergenic
TTTCTCGTTCTCTAGTGCAG+GGG 0.641292 7:+99775501 None:intergenic
TATGTTGGGACCAGATCTGA+AGG 0.647079 7:-99775362 MsaT040398.1:CDS
TTGTGATTAATGAAAGAGTG+GGG 0.673933 7:-99775246 MsaT040398.1:CDS
GTTGTGATTAATGAAAGAGT+GGG 0.684483 7:-99775247 MsaT040398.1:CDS
ACACCTCCCAAACGTAAAGG+TGG 0.689755 7:-99775610 MsaT040398.1:CDS
GAAGGGAAGATGGACCGCAG+AGG 0.690611 7:-99777064 MsaT040398.1:CDS
TGTGATTAATGAAAGAGTGG+GGG 0.736683 7:-99775245 MsaT040398.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 99774952 99777124 99774952 ID=MsaG040398
Chr7 mRNA 99774952 99777124 99774952 ID=MsaT040398.1;Parent=MsaG040398
Chr7 exon 99774952 99775795 99774952 ID=MsaT040398.1.exon3;Parent=MsaT040398.1
Chr7 CDS 99774952 99775795 99774952 ID=cds.MsaT040398.1;Parent=MsaT040398.1
Chr7 exon 99776757 99776886 99776757 ID=MsaT040398.1.exon2;Parent=MsaT040398.1
Chr7 CDS 99776757 99776886 99776757 ID=cds.MsaT040398.1;Parent=MsaT040398.1
Chr7 exon 99776992 99777124 99776992 ID=MsaT040398.1.exon1;Parent=MsaT040398.1
Chr7 CDS 99776992 99777124 99776992 ID=cds.MsaT040398.1;Parent=MsaT040398.1
Gene Sequence

>MsaT040398.1

ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAGGGAAGATGGACCGCAGAGGAGGATGAAATTTTGACCCAATATGTTAAGGCAAATGGGGAAGGTTCTTGGAGGTCATTGCCCAAAAATGCAGGTTTGCTTAGATGTGGTAAAAGTTGTAGATTAAGATGGATTAACTATTTGAGAGCTGATCTCAAAAGGGGAAATATTTCTTCTGAAGAGGAAAGTATCATTGTCAAGATGCATGCTTCTTTTGGCAACAGGTGGTCCTTGATTGCAAGTCACTTGCCAGGCAGAACAGACAACGAGATTAAAAATTACTGGAACTCACACTTGAGTAGGAAAGTTTACAGCTTCCGAGGAACATCAACAAATTATAATAATATCAAAGAGATAGAGATTCCATCAGAAGGAATCATAGTTGATACACCTCCCAAACGTAAAGGTGGTAGAACTAGTCGATGGGCTATGAAGAAGAACAAACGATATATATCCCAAAGAAGTGAACCTGCTGCAATTGTTACACTTCCACCCACCCCTGCACTAGAGAACGAGAAAATGGTTATGGGCTCAGTAAATGGGCCTTGTTCTAGTGGTGAAGATGGCCCAAATAGGTTGCAATTACCGTGCATTGACGGTGAAAATAATAGTAGTATTGAAGTTGATTGTGACCGTATGTTGGGACCAGATCTGAAGGTCATTAATGATGGTGAGTTGTTAGATTTTAATGATATTATCATGGATACTTTGGAGGTGGAAGAAGAAAAAGAAAGTAATGATGAAAATGTGGTTGTGATTAATGAAAGAGTGGGGGACAAAGGCACCAACACAAATGGAACAAAGGGCATAGAGAGAAATAACAATGTGACGAATCAATGTTCGAATGAGGAGTTCAATTCTTCAACTTCAAAGACTTCGGGTTTGGATGATAACTTGGATTGGGAGAGTGTTATGCCATTGTTGAATCAGAAAGGTCAATCGTTGTTGTGGGAGCAAGATGAAAACATGCTAACTTGGTTGTTGGATGATGATCAATGGGAAAAGGATTTTCAGAGATTTCGAGATATTGATCCTCAGAAGCAAAATGCTTTGGTTTCTTGGTTTTAA
Protein sequence

>MsaT040398.1

MGRAPCCEKVGLKKGRWTAEEDEILTQYVKANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISSEEESIIVKMHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFRGTSTNYNNIKEIEIPSEGIIVDTPPKRKGGRTSRWAMKKNKRYISQRSEPAAIVTLPPTPALENEKMVMGSVNGPCSSGEDGPNRLQLPCIDGENNSSIEVDCDRMLGPDLKVINDGELLDFNDIIMDTLEVEEEKESNDENVVVINERVGDKGTNTNGTKGIERNNNVTNQCSNEEFNSSTSKTSGLDDNLDWESVMPLLNQKGQSLLWEQDENMLTWLLDDDQWEKDFQRFRDIDPQKQNALVSWF*