AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040418

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040418 MtrunA17_Chr7g0270051 96.241 266 8 2 1 265 1 265 0.0 519
MsaG040418 MtrunA17_Chr2g0293481 47.500 160 74 4 1 155 213 367 4.00e-36 134
MsaG040418 MtrunA17_Chr8g0379461 57.273 110 42 3 25 131 45 152 1.09e-35 127
MsaG040418 MtrunA17_Chr7g0248691 51.493 134 50 3 24 151 134 258 4.60e-35 128
MsaG040418 MtrunA17_Chr8g0348311 48.462 130 55 2 8 137 122 239 2.38e-34 126
MsaG040418 MtrunA17_Chr2g0284321 51.200 125 55 4 24 146 9 129 3.10e-33 120
MsaG040418 MtrunA17_Chr2g0319961 54.472 123 48 5 2 120 31 149 1.33e-31 117
MsaG040418 MtrunA17_Chr1g0202461 48.276 116 49 2 8 120 224 331 5.74e-30 115
MsaG040418 MtrunA17_Chr5g0401821 54.945 91 37 1 20 110 170 256 4.58e-28 108
MsaG040418 MtrunA17_Chr8g0387501 61.333 75 26 1 49 120 125 199 9.39e-28 107
MsaG040418 MtrunA17_Chr4g0053281 55.814 86 34 1 25 110 242 323 1.40e-26 105
MsaG040418 MtrunA17_Chr1g0147881 51.136 88 38 1 23 110 237 319 4.45e-26 104
MsaG040418 MtrunA17_Chr4g0071521 55.056 89 36 2 22 110 218 302 9.06e-26 103
MsaG040418 MtrunA17_Chr2g0289181 47.619 84 44 0 43 126 4 87 2.77e-23 94.7
MsaG040418 MtrunA17_Chr1g0184691 60.000 60 24 0 51 110 291 350 2.91e-22 94.4
MsaG040418 MtrunA17_Chr7g0228941 40.404 99 49 2 13 110 20 109 1.28e-21 87.4
MsaG040418 MtrunA17_Chr3g0139021 43.023 86 40 1 25 110 295 371 3.62e-20 89.0
MsaG040418 MtrunA17_Chr3g0099641 39.200 125 61 4 3 124 213 325 4.90e-20 89.0
MsaG040418 MtrunA17_Chr4g0051881 60.317 63 24 1 54 116 179 240 1.53e-19 86.7
MsaG040418 MtrunA17_Chr7g0270831 50.649 77 35 1 51 124 214 290 1.78e-19 87.0
MsaG040418 MtrunA17_Chr2g0288871 46.429 84 39 1 30 113 288 365 2.21e-19 87.4
MsaG040418 MtrunA17_Chr1g0194481 52.000 75 34 2 54 128 159 231 4.11e-19 85.1
MsaG040418 MtrunA17_Chr4g0051181 55.556 63 28 0 53 115 243 305 4.62e-19 86.3
MsaG040418 MtrunA17_Chr4g0075201 55.556 63 28 0 53 115 267 329 9.95e-19 85.5
MsaG040418 MtrunA17_Chr5g0418191 54.412 68 30 1 54 121 321 387 1.01e-18 85.1
MsaG040418 MtrunA17_Chr5g0418191 47.826 69 32 3 54 120 152 218 9.30e-12 64.7
MsaG040418 MtrunA17_Chr4g0042831 46.067 89 46 2 51 139 276 362 1.31e-18 84.3
MsaG040418 MtrunA17_Chr4g0042831 38.372 86 45 3 42 125 139 218 9.31e-12 64.3
MsaG040418 MtrunA17_Chr7g0270191 40.777 103 56 3 54 152 146 247 1.96e-18 82.8
MsaG040418 MtrunA17_Chr2g0294231 50.000 74 35 2 54 127 204 275 2.10e-18 84.0
MsaG040418 MtrunA17_Chr7g0218081 40.594 101 57 2 54 152 411 510 2.60e-18 84.3
MsaG040418 MtrunA17_Chr7g0218081 51.667 60 27 2 54 113 229 286 4.10e-12 65.9
MsaG040418 MtrunA17_Chr7g0216891 55.932 59 26 0 53 111 219 277 3.10e-18 84.0
MsaG040418 MtrunA17_Chr8g0347251 46.296 108 51 4 3 108 91 193 4.73e-18 82.4
MsaG040418 MtrunA17_Chr2g0322391 38.384 99 55 1 17 115 319 411 8.69e-18 82.8
MsaG040418 MtrunA17_Chr4g0068541 33.898 118 59 2 54 171 209 307 9.85e-18 82.0
MsaG040418 MtrunA17_Chr7g0238921 57.576 66 27 1 45 110 116 180 3.81e-17 79.7
MsaG040418 MtrunA17_Chr3g0079691 53.623 69 31 1 54 122 496 563 4.24e-17 80.9
MsaG040418 MtrunA17_Chr3g0079691 53.846 65 27 3 50 113 276 338 5.40e-14 71.6
MsaG040418 MtrunA17_Chr4g0025061 47.761 67 35 0 49 115 356 422 6.01e-17 80.1
MsaG040418 MtrunA17_Chr5g0443131 55.556 63 27 1 54 116 158 219 6.67e-17 79.0
MsaG040418 MtrunA17_Chr4g0060271 54.098 61 28 0 53 113 255 315 1.36e-16 79.3
MsaG040418 MtrunA17_Chr4g0025051 49.231 65 33 0 49 113 331 395 1.88e-16 79.0
MsaG040418 MtrunA17_Chr1g0150801 54.237 59 26 1 54 112 103 160 1.96e-16 74.7
MsaG040418 MtrunA17_Chr4g0001361 46.269 67 36 0 54 120 163 229 1.96e-16 77.4
MsaG040418 MtrunA17_Chr3g0101131 39.130 115 65 3 9 119 367 480 2.48e-16 78.6
MsaG040418 MtrunA17_Chr3g0101131 50.000 60 28 2 54 113 244 301 1.06e-11 64.7
MsaG040418 MtrunA17_Chr5g0445311 53.030 66 30 1 54 119 365 429 2.65e-16 78.2
MsaG040418 MtrunA17_Chr5g0445311 50.820 61 28 2 53 113 200 258 1.69e-12 67.0
MsaG040418 MtrunA17_Chr7g0275531 32.121 165 97 4 3 165 71 222 2.99e-16 77.0
MsaG040418 MtrunA17_Chr5g0447701 39.130 115 57 3 13 115 200 313 3.21e-16 77.4
MsaG040418 MtrunA17_Chr2g0302391 53.226 62 29 0 54 115 212 273 4.19e-16 77.4
MsaG040418 MtrunA17_Chr7g0243891 48.571 70 35 1 54 123 375 443 7.24e-16 77.0
MsaG040418 MtrunA17_Chr7g0243891 55.000 60 25 2 54 113 217 274 1.64e-13 70.1
MsaG040418 MtrunA17_Chr7g0224801 50.000 58 28 1 54 111 94 150 8.90e-16 73.2
MsaG040418 MtrunA17_Chr2g0333851 47.541 61 32 0 54 114 170 230 1.18e-15 75.5
MsaG040418 MtrunA17_Chr5g0418781 42.574 101 55 3 10 110 83 180 1.53e-15 74.7
MsaG040418 MtrunA17_Chr4g0074001 45.070 71 38 1 43 113 349 418 1.90e-15 75.9
MsaG040418 MtrunA17_Chr4g0024391 43.023 86 43 1 30 115 212 291 2.47e-15 75.5
MsaG040418 MtrunA17_Chr7g0249301 50.000 62 30 1 54 115 293 353 2.83e-15 74.7
MsaG040418 MtrunA17_Chr7g0249301 48.387 62 30 2 54 115 63 122 2.56e-13 68.9
MsaG040418 MtrunA17_Chr7g0263531 47.887 71 33 2 53 123 361 427 2.84e-15 75.1
MsaG040418 MtrunA17_Chr7g0263531 53.333 60 26 2 54 113 190 247 3.64e-13 68.9
MsaG040418 MtrunA17_Chr3g0136961 45.570 79 36 2 39 110 117 195 3.39e-15 73.9
MsaG040418 MtrunA17_Chr8g0387981 35.526 152 84 4 24 172 106 246 4.44e-15 73.9
MsaG040418 MtrunA17_Chr7g0249311 46.053 76 35 2 54 124 393 467 5.20e-15 74.7
MsaG040418 MtrunA17_Chr7g0249311 53.333 60 26 2 54 113 180 237 4.96e-13 68.6
MsaG040418 MtrunA17_Chr4g0004911 48.387 62 31 1 54 115 337 397 6.97e-15 73.9
MsaG040418 MtrunA17_Chr4g0004911 53.333 60 27 1 54 113 185 243 8.38e-14 70.9
MsaG040418 MtrunA17_Chr3g0126391 53.226 62 27 1 49 108 129 190 9.69e-15 72.8
MsaG040418 MtrunA17_Chr5g0432161 49.254 67 33 1 54 120 422 487 1.51e-14 73.2
MsaG040418 MtrunA17_Chr5g0432161 53.333 60 26 2 54 113 245 302 9.68e-13 67.8
MsaG040418 MtrunA17_Chr3g0129321 50.000 60 29 1 54 113 119 177 1.80e-14 70.5
MsaG040418 MtrunA17_Chr8g0383251 47.619 63 32 1 51 113 106 167 1.87e-14 69.7
MsaG040418 MtrunA17_Chr6g0485431 46.250 80 35 3 35 113 142 214 2.26e-14 72.0
MsaG040418 MtrunA17_Chr7g0248721 55.172 58 24 2 54 111 142 197 3.03e-14 70.1
MsaG040418 MtrunA17_Chr3g0106491 47.761 67 34 1 54 120 366 431 4.16e-14 71.6
MsaG040418 MtrunA17_Chr3g0106491 51.613 62 28 2 54 115 199 258 2.19e-13 69.7
MsaG040418 MtrunA17_Chr1g0150281 47.368 57 30 0 54 110 141 197 1.01e-13 69.7
MsaG040418 MtrunA17_Chr1g0150271 46.667 60 32 0 54 113 102 161 1.42e-13 68.6
MsaG040418 MtrunA17_Chr8g0335811 54.386 57 25 1 54 110 155 210 2.12e-13 67.8
MsaG040418 MtrunA17_Chr1g0188941 46.032 63 33 1 54 116 52 113 4.72e-13 64.3
MsaG040418 MtrunA17_Chr1g0189391 53.448 58 25 2 54 110 98 154 1.10e-12 67.0
MsaG040418 MtrunA17_Chr8g0386241 44.828 58 31 1 54 111 104 160 3.17e-12 63.5
MsaG040418 MtrunA17_Chr3g0129361 45.588 68 36 1 54 121 145 211 5.55e-12 63.5
MsaG040418 MtrunA17_Chr8g0383351 45.588 68 36 1 54 121 161 227 9.43e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040418 AT2G34830.1 54.783 115 51 1 1 114 162 276 1.14e-35 132
MsaG040418 AT2G34830.2 54.783 115 51 1 1 114 171 285 1.25e-35 132
MsaG040418 AT4G01250.1 50.000 130 48 2 24 145 108 228 4.21e-35 128
MsaG040418 AT1G29280.1 60.396 101 34 3 25 122 44 141 8.82e-34 123
MsaG040418 AT3G58710.2 54.198 131 43 4 10 126 14 141 1.14e-33 123
MsaG040418 AT1G30650.1 60.417 96 37 1 19 113 182 277 2.14e-33 126
MsaG040418 AT3G58710.1 60.000 105 36 3 25 126 41 142 6.89e-33 121
MsaG040418 AT5G52830.1 50.400 125 51 2 24 145 144 260 2.84e-31 119
MsaG040418 AT4G23550.1 52.336 107 48 1 43 146 130 236 6.18e-28 109
MsaG040418 AT2G23320.1 53.333 90 36 2 22 110 213 297 3.30e-27 107
MsaG040418 AT5G45050.2 56.044 91 32 1 24 114 1131 1213 2.02e-26 108
MsaG040418 AT5G45050.1 56.044 91 32 1 24 114 1159 1241 2.05e-26 108
MsaG040418 AT5G45050.4 56.044 91 32 1 24 114 1020 1102 2.48e-26 108
MsaG040418 AT4G24240.1 56.180 89 35 2 22 110 254 338 2.67e-26 105
MsaG040418 AT2G30590.1 52.222 90 39 2 22 111 286 371 1.14e-25 104
MsaG040418 AT4G31550.2 54.651 86 35 2 25 110 221 302 1.46e-24 100
MsaG040418 AT5G28650.1 51.613 93 41 1 18 110 231 319 1.62e-24 100
MsaG040418 AT2G24570.1 56.000 75 31 1 36 110 228 300 2.70e-24 99.8
MsaG040418 AT4G31550.1 56.000 75 31 1 36 110 231 303 3.14e-24 99.8
MsaG040418 AT3G04670.1 50.538 93 42 1 18 110 231 319 3.90e-24 99.4
MsaG040418 AT5G45260.1 60.274 73 24 2 53 120 1208 1280 1.61e-22 97.4
MsaG040418 AT4G04450.2 39.655 116 64 3 28 137 170 285 4.22e-20 89.4
MsaG040418 AT4G04450.1 39.655 116 64 3 28 137 264 379 5.24e-20 89.4
MsaG040418 AT1G29860.1 55.882 68 29 1 54 121 137 203 5.25e-20 87.4
MsaG040418 AT5G46350.1 54.321 81 32 2 54 130 184 263 5.29e-20 88.2
MsaG040418 AT4G18170.1 48.485 99 48 2 20 116 137 234 8.10e-20 87.4
MsaG040418 AT1G68150.1 48.000 75 39 0 53 127 235 309 1.52e-19 87.4
MsaG040418 AT4G22070.4 46.429 84 39 1 30 113 280 357 1.66e-19 88.2
MsaG040418 AT4G22070.3 46.429 84 39 1 30 113 280 357 1.66e-19 88.2
MsaG040418 AT4G22070.2 46.429 84 39 1 30 113 280 357 1.66e-19 88.2
MsaG040418 AT4G22070.1 46.429 84 39 1 30 113 280 357 1.66e-19 88.2
MsaG040418 AT2G04880.2 54.930 71 31 1 53 123 283 352 2.45e-19 87.4
MsaG040418 AT2G04880.2 48.387 62 30 2 54 115 112 171 3.66e-12 66.2
MsaG040418 AT2G04880.1 53.425 73 33 1 51 123 305 376 2.79e-19 87.4
MsaG040418 AT2G04880.1 48.387 62 30 2 54 115 112 171 3.73e-12 66.2
MsaG040418 AT1G62300.1 57.377 61 26 0 53 113 312 372 4.22e-19 87.0
MsaG040418 AT5G49520.1 60.000 60 23 1 54 113 222 280 6.37e-19 85.9
MsaG040418 AT1G18860.1 48.276 87 39 2 27 113 219 299 6.85e-19 86.3
MsaG040418 AT4G26640.5 34.228 149 76 3 12 151 176 311 1.76e-18 84.3
MsaG040418 AT4G26640.5 44.595 74 39 2 51 124 33 104 5.11e-13 68.6
MsaG040418 AT4G26640.6 34.228 149 76 3 12 151 176 311 1.76e-18 84.3
MsaG040418 AT4G26640.6 44.595 74 39 2 51 124 33 104 5.11e-13 68.6
MsaG040418 AT4G26640.4 34.228 149 76 3 12 151 176 311 1.76e-18 84.3
MsaG040418 AT4G26640.4 44.595 74 39 2 51 124 33 104 5.11e-13 68.6
MsaG040418 AT4G26640.3 34.228 149 76 3 12 151 176 311 1.76e-18 84.3
MsaG040418 AT4G26640.3 44.595 74 39 2 51 124 33 104 5.11e-13 68.6
MsaG040418 AT4G26640.1 34.228 149 76 3 12 151 280 415 2.80e-18 84.3
MsaG040418 AT4G26640.1 44.595 74 39 2 51 124 137 208 7.46e-13 68.6
MsaG040418 AT4G26640.7 34.228 149 76 3 12 151 312 447 3.06e-18 84.3
MsaG040418 AT4G26640.7 44.595 74 39 2 51 124 169 240 9.48e-13 68.2
MsaG040418 AT4G26640.2 34.228 149 76 3 12 151 352 487 3.35e-18 84.3
MsaG040418 AT4G26640.2 44.595 74 39 2 51 124 209 280 9.47e-13 68.2
MsaG040418 AT2G25000.2 50.000 70 35 0 54 123 104 173 7.96e-18 80.5
MsaG040418 AT2G25000.4 50.000 70 35 0 54 123 104 173 7.96e-18 80.5
MsaG040418 AT4G01720.1 45.122 82 39 1 32 113 224 299 1.15e-17 82.4
MsaG040418 AT2G25000.3 50.000 70 35 0 54 123 126 195 1.39e-17 80.1
MsaG040418 AT5G15130.1 49.333 75 35 1 53 124 227 301 1.43e-17 82.4
MsaG040418 AT2G25000.1 50.000 70 35 0 54 123 147 216 1.65e-17 80.5
MsaG040418 AT2G21900.1 33.019 106 68 2 11 116 69 171 2.05e-17 78.6
MsaG040418 AT5G15130.2 49.333 75 35 1 53 124 185 259 2.05e-17 82.0
MsaG040418 AT4G31800.2 53.226 62 29 0 54 115 112 173 2.07e-17 79.7
MsaG040418 AT4G31800.1 53.226 62 29 0 54 115 177 238 2.38e-17 80.5
MsaG040418 AT1G13960.2 54.386 57 25 1 54 110 257 312 2.73e-17 80.9
MsaG040418 AT1G13960.2 53.333 60 26 2 54 113 77 134 4.01e-13 68.9
MsaG040418 AT3G62340.1 55.556 63 27 1 54 116 119 180 2.80e-17 79.7
MsaG040418 AT2G03340.1 51.515 66 31 1 54 119 416 480 2.80e-17 81.6
MsaG040418 AT2G03340.1 45.333 75 38 3 37 110 233 305 1.41e-12 67.8
MsaG040418 AT1G13960.1 54.386 57 25 1 54 110 410 465 4.76e-17 80.9
MsaG040418 AT1G13960.1 53.333 60 26 2 54 113 230 287 5.31e-13 68.9
MsaG040418 AT1G80840.1 42.000 100 47 3 27 119 117 212 8.80e-17 79.0
MsaG040418 AT2G30250.1 54.545 66 29 1 54 119 329 393 1.47e-16 79.0
MsaG040418 AT1G55600.1 48.438 64 32 1 52 115 306 368 1.67e-16 79.3
MsaG040418 AT4G23810.1 48.276 87 40 2 24 108 132 215 1.86e-16 78.2
MsaG040418 AT1G69310.4 44.565 92 47 4 19 110 116 203 2.89e-16 77.0
MsaG040418 AT1G69310.2 44.565 92 47 4 19 110 116 203 2.89e-16 77.0
MsaG040418 AT1G69310.1 44.565 92 47 4 19 110 116 203 2.89e-16 77.0
MsaG040418 AT2G38470.1 51.389 72 33 2 54 124 363 433 4.46e-16 78.2
MsaG040418 AT2G38470.1 51.667 60 27 2 54 113 185 242 3.86e-12 66.2
MsaG040418 AT3G01080.1 53.968 63 28 1 51 113 304 365 4.74e-16 77.8
MsaG040418 AT3G01080.1 53.333 60 26 2 54 113 168 225 7.36e-13 68.2
MsaG040418 AT3G01080.2 55.000 60 26 1 54 113 345 403 5.60e-16 77.4
MsaG040418 AT3G01080.2 53.333 60 26 2 54 113 206 263 8.23e-13 68.2
MsaG040418 AT4G30935.1 48.438 64 32 1 50 113 328 390 6.89e-16 77.4
MsaG040418 AT2G46400.1 36.806 144 77 4 14 145 65 206 8.38e-16 75.9
MsaG040418 AT5G13080.1 50.000 58 28 1 54 111 68 124 1.07e-15 72.8
MsaG040418 AT4G11070.2 41.509 106 57 2 5 108 64 166 1.29e-15 75.1
MsaG040418 AT4G11070.1 41.509 106 57 2 5 108 96 198 1.54e-15 75.5
MsaG040418 AT5G56270.1 53.226 62 28 1 54 115 488 548 1.55e-15 76.6
MsaG040418 AT5G56270.1 50.769 65 29 3 50 113 269 331 5.56e-12 65.9
MsaG040418 AT5G26170.1 54.386 57 25 1 54 110 114 169 1.99e-15 72.8
MsaG040418 AT2G46130.1 48.611 72 36 1 54 125 31 101 2.58e-15 70.5
MsaG040418 AT2G47260.1 53.333 60 27 1 54 113 175 233 2.69e-15 75.1
MsaG040418 AT5G43290.1 36.296 135 80 5 29 159 89 221 4.68e-15 73.6
MsaG040418 AT1G64000.1 50.000 58 28 1 54 111 115 171 1.14e-14 71.2
MsaG040418 AT5G41570.1 50.000 58 28 1 54 111 99 155 1.25e-14 70.5
MsaG040418 AT4G26440.1 50.000 66 32 1 54 119 373 437 1.30e-14 73.6
MsaG040418 AT4G26440.1 53.333 60 26 2 54 113 179 236 3.51e-12 66.6
MsaG040418 AT5G24110.1 42.222 90 43 3 23 108 86 170 3.64e-14 71.2
MsaG040418 AT3G01970.1 47.368 57 29 1 54 110 66 121 4.37e-14 68.2
MsaG040418 AT2G37260.1 54.386 57 25 1 54 110 350 405 6.00e-14 71.6
MsaG040418 AT2G37260.1 45.122 82 38 3 54 130 166 245 2.33e-11 63.9
MsaG040418 AT2G37260.3 54.386 57 25 1 54 110 270 325 6.65e-14 70.9
MsaG040418 AT2G37260.3 45.122 82 38 3 54 130 86 165 2.75e-11 63.5
MsaG040418 AT2G37260.2 54.386 57 25 1 54 110 268 323 6.77e-14 70.9
MsaG040418 AT2G37260.2 45.122 82 38 3 54 130 84 163 2.91e-11 63.2
MsaG040418 AT2G44745.1 49.315 73 28 2 54 118 146 217 6.90e-14 69.3
MsaG040418 AT5G64810.1 50.877 57 27 1 54 110 111 166 9.55e-14 68.6
MsaG040418 AT5G07100.2 50.820 61 29 1 54 114 142 201 1.41e-13 68.6
MsaG040418 AT5G07100.2 36.538 104 61 2 54 157 25 123 3.29e-13 67.4
MsaG040418 AT5G07100.4 50.820 61 29 1 54 114 142 201 1.41e-13 68.6
MsaG040418 AT5G07100.4 36.538 104 61 2 54 157 25 123 3.29e-13 67.4
MsaG040418 AT5G07100.5 50.820 61 29 1 54 114 142 201 1.41e-13 68.6
MsaG040418 AT5G07100.5 36.538 104 61 2 54 157 25 123 3.29e-13 67.4
MsaG040418 AT5G07100.3 50.820 61 29 1 54 114 142 201 1.41e-13 68.6
MsaG040418 AT5G07100.3 36.538 104 61 2 54 157 25 123 3.29e-13 67.4
MsaG040418 AT5G07100.1 50.820 61 29 1 54 114 235 294 3.35e-13 68.6
MsaG040418 AT5G07100.1 36.538 104 61 2 54 157 118 216 8.42e-13 67.4
MsaG040418 AT1G69810.1 45.455 66 35 1 53 117 203 268 7.66e-13 68.2
MsaG040418 AT3G01080.3 53.333 60 26 2 54 113 206 263 1.03e-12 67.4
MsaG040418 AT1G69810.2 45.455 66 35 1 53 117 145 210 1.48e-12 67.0
MsaG040418 AT2G40740.1 45.455 77 37 2 52 123 172 248 2.10e-12 66.2
MsaG040418 AT2G40740.3 43.373 83 45 1 52 132 181 263 2.22e-12 66.2
MsaG040418 AT4G39410.1 46.479 71 32 2 54 119 224 293 4.02e-12 65.5
MsaG040418 AT4G12020.6 42.222 90 37 4 42 123 462 544 1.22e-11 65.1
MsaG040418 AT4G12020.8 42.222 90 37 4 42 123 462 544 1.22e-11 65.1
MsaG040418 AT4G12020.7 42.222 90 37 4 42 123 462 544 1.46e-11 65.1
MsaG040418 AT4G12020.10 42.222 90 37 4 42 123 462 544 1.48e-11 65.1
MsaG040418 AT4G12020.3 42.222 90 37 4 42 123 462 544 1.52e-11 65.1
MsaG040418 AT4G12020.1 42.222 90 37 4 42 123 462 544 1.56e-11 64.7
MsaG040418 AT4G12020.9 42.222 90 37 4 42 123 462 544 1.56e-11 64.7
MsaG040418 AT1G69310.3 41.304 92 46 5 19 110 116 199 1.64e-11 63.5
MsaG040418 AT4G12020.5 42.222 90 37 4 42 123 395 477 1.66e-11 64.7
MsaG040418 AT4G12020.4 42.222 90 37 4 42 123 462 544 1.71e-11 64.7
MsaG040418 AT4G12020.2 42.222 90 37 4 42 123 462 544 1.73e-11 64.7
MsaG040418 AT4G12020.11 42.222 90 37 4 42 123 462 544 1.82e-11 64.7
MsaG040418 AT3G56400.1 30.137 146 95 3 54 192 121 266 2.84e-11 62.8
MsaG040418 AT2G40750.1 31.624 117 70 4 54 166 153 263 7.46e-11 62.0
MsaG040418 AT2G46130.2 43.056 72 36 1 54 125 31 97 8.95e-11 58.2

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATCTGTTTCTGTTCT+TGG 0.057409 7:-100009155 None:intergenic
ATCTTTGGTTGTTTCGGTTT+CGG 0.251832 7:-100009106 None:intergenic
CAAAATAGATCTTCTCTTAG+AGG 0.264483 7:+100009332 MsaT040418.1:CDS
TTCTTAGATACTTGAGATTC+TGG 0.282785 7:-100007809 None:intergenic
AGATGTTTCTGACTCAAGTT+TGG 0.285896 7:-100007774 None:intergenic
TTACTTTGAAAGGATCTTCT+TGG 0.303191 7:-100009287 None:intergenic
AGATCCTTTCAAAGTAAATA+TGG 0.318455 7:+100009293 MsaT040418.1:CDS
TGGGAGATCTTTGGTTGTTT+CGG 0.331416 7:-100009112 None:intergenic
AGAAGTAACTGGGAGATCTT+TGG 0.334573 7:-100009121 None:intergenic
AAGAATGCACACCTTGGATA+TGG 0.343407 7:-100008096 None:intergenic
GAGGAGAGGGCTGTGGGATC+AGG 0.346398 7:-100009048 None:intergenic
GTTTCGGTTTCGGATTCTTT+TGG 0.357685 7:-100009096 None:intergenic
GGTGGAGGAGGAGAGGGCTG+TGG 0.362115 7:-100009055 None:intergenic
AGATCTCCCAGTTACTTCTA+AGG 0.363955 7:+100009125 MsaT040418.1:CDS
GATGTTTCTGACTCAAGTTT+GGG 0.377930 7:-100007773 None:intergenic
AGCTAAATTTGTGGTGGAGG+AGG 0.406354 7:-100009067 None:intergenic
GGATATGGAGAGCCTTTGAT+TGG 0.415352 7:-100008081 None:intergenic
ATCAATCAAGAAGGGGCAAC+AGG 0.418051 7:-100009498 None:intergenic
TTGTGCATGTCTCAGGAAAA+TGG 0.421017 7:+100007954 MsaT040418.1:intron
CAGGAAAATGGTTGAGAAAA+CGG 0.425854 7:+100007966 MsaT040418.1:intron
AAATCTACAGGGGATATTAT+AGG 0.447185 7:+100008926 MsaT040418.1:intron
GTGGAGGAGGAGAGGGCTGT+GGG 0.474492 7:-100009054 None:intergenic
AACACTTGAATCAATCAAGA+AGG 0.485790 7:-100009507 None:intergenic
AATCTCAAGTATCTAAGAAA+CGG 0.515113 7:+100007813 MsaT040418.1:CDS
TTGAGCTAAATTTGTGGTGG+AGG 0.521910 7:-100009070 None:intergenic
GTTAGCAAGGTGAAGAATGA+AGG 0.526261 7:+100008015 MsaT040418.1:CDS
TGGTCGTTGAGCTAAATTTG+TGG 0.534592 7:-100009076 None:intergenic
ACGGTTGTGACTGTGAGGAT+TGG 0.535468 7:+100007985 MsaT040418.1:CDS
TTATAGGTGCAGCACATGCA+AGG 0.538816 7:+100008942 MsaT040418.1:CDS
ATTTGTGGTGGAGGAGGAGA+GGG 0.545438 7:-100009061 None:intergenic
ACACTTGAATCAATCAAGAA+GGG 0.556191 7:-100009506 None:intergenic
GATTGGAGAGAATGTTAGCA+AGG 0.558707 7:+100008002 MsaT040418.1:CDS
TTTCTTCCTTAGAAGTAACT+GGG 0.572607 7:-100009131 None:intergenic
AGAACAGAAACAGATAGAAG+AGG 0.574832 7:+100009158 MsaT040418.1:CDS
ATGGTTATGTGTTGAAGTAT+AGG 0.580225 7:-100009025 None:intergenic
AATTTGTGGTGGAGGAGGAG+AGG 0.601207 7:-100009062 None:intergenic
TATAGGTGCAGCACATGCAA+GGG 0.614000 7:+100008943 MsaT040418.1:CDS
ATGTTTCTGACTCAAGTTTG+GGG 0.614751 7:-100007772 None:intergenic
TCAAAGGCTCTCCATATCCA+AGG 0.621296 7:+100008085 MsaT040418.1:CDS
ATGTCCTCTGAGCAGTGTGT+TGG 0.622572 7:-100009255 None:intergenic
TCGTTGAGCTAAATTTGTGG+TGG 0.624880 7:-100009073 None:intergenic
TGCAAAATAGATGAAGACAT+AGG 0.628453 7:-100009441 None:intergenic
CACTTGAATCAATCAAGAAG+GGG 0.629385 7:-100009505 None:intergenic
AGAGGGCTGTGGGATCAGGA+TGG 0.632076 7:-100009044 None:intergenic
TGTTTCTGACTCAAGTTTGG+GGG 0.636435 7:-100007771 None:intergenic
TTTAACTGTGCATAGCAGAG+TGG 0.661783 7:-100009360 None:intergenic
ATCTCCAACACACTGCTCAG+AGG 0.702439 7:+100009251 MsaT040418.1:CDS
AGAAAACGGTTGTGACTGTG+AGG 0.708929 7:+100007980 MsaT040418.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 100007755 100009515 100007755 ID=MsaG040418
Chr7 mRNA 100007755 100009515 100007755 ID=MsaT040418.1;Parent=MsaG040418
Chr7 exon 100007755 100007834 100007755 ID=MsaT040418.1.exon1;Parent=MsaT040418.1
Chr7 CDS 100007755 100007834 100007755 ID=cds.MsaT040418.1;Parent=MsaT040418.1
Chr7 exon 100007969 100008106 100007969 ID=MsaT040418.1.exon2;Parent=MsaT040418.1
Chr7 CDS 100007969 100008106 100007969 ID=cds.MsaT040418.1;Parent=MsaT040418.1
Chr7 exon 100008936 100009515 100008936 ID=MsaT040418.1.exon3;Parent=MsaT040418.1
Chr7 CDS 100008936 100009515 100008936 ID=cds.MsaT040418.1;Parent=MsaT040418.1
Gene Sequence

>MsaT040418.1

ATGGACAGTAATGCCTCCCCCAAACTTGAGTCAGAAACATCTTTAGAGCTCAAACCAGAATCTCAAGTATCTAAGAAACGGAAAATGGTTGAGAAAACGGTTGTGACTGTGAGGATTGGAGAGAATGTTAGCAAGGTGAAGAATGAAGGACTTCCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGCTCTCCATATCCAAGGGGATATTATAGGTGCAGCACATGCAAGGGCTGTTCAGCCAAAAAACAAGTAGAGAGAAGCAGCACAGATGCTTCATTGCTCATCATCACCTATACTTCAACACATAACCATCCTGATCCCACAGCCCTCTCCTCCTCCACCACAAATTTAGCTCAACGACCAAAAGAATCCGAAACCGAAACAACCAAAGATCTCCCAGTTACTTCTAAGGAAGAAAACCAAGAACAGAAACAGATAGAAGAGGAAATTAACAGTAATAAGAGCACTGTGAGTAGTGATCAAGTTACAAATGAAGAAAATTTTCATTACTTACAATCTCCAACACACTGCTCAGAGGACATCATTATAGACCAAGAAGATCCTTTCAAAGTAAATATGGAAAAAAGCCACATTGACAAAATAGATCTTCTCTTAGAGGAAGAGCCACTCTGCTATGCACAGTTAAAGAATTTGTCTGCATCTAAATCAGAAGAACTTGATTTTTTCGATGAACTTGAGGAGTTACCTATGTCTTCATCTATTTTGCACTTTACGAGGAGCATTTTTTCTGATGAAAGGATTCCTGTTGCCCCTTCTTGA
Protein sequence

>MsaT040418.1

MDSNASPKLESETSLELKPESQVSKKRKMVEKTVVTVRIGENVSKVKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTCKGCSAKKQVERSSTDASLLIITYTSTHNHPDPTALSSSTTNLAQRPKESETETTKDLPVTSKEENQEQKQIEEEINSNKSTVSSDQVTNEENFHYLQSPTHCSEDIIIDQEDPFKVNMEKSHIDKIDLLLEEEPLCYAQLKNLSASKSEELDFFDELEELPMSSSILHFTRSIFSDERIPVAPS*