AlfalfaGEDB | MsaG040433

M. sativa ssp. caerulea / MsaG040433

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040433	XP_003625994.2	96.610	295	9	1	1	295	2	295	0.0	590

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040433	sp\|O22900\|WRK23_ARATH	53.361	238	84	6	82	295	103	337	6.05e-61	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040433	tr\|G7KTN2\|G7KTN2_MEDTR	96.610	295	9	1	1	295	2	295	0.0	590

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040433	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040433	MtrunA17_Chr7g0270191	96.610	295	9	1	1	295	2	295	0.0	590
MsaG040433	MtrunA17_Chr1g0194481	61.290	310	75	17	20	295	27	325	5.72e-93	278
MsaG040433	MtrunA17_Chr2g0294231	40.909	308	128	11	34	295	73	372	2.51e-43	152
MsaG040433	MtrunA17_Chr5g0418781	46.561	189	70	5	118	291	98	270	5.44e-41	143
MsaG040433	MtrunA17_Chr4g0051881	48.276	174	71	6	131	292	165	331	9.86e-40	141
MsaG040433	MtrunA17_Chr5g0443131	47.879	165	74	3	131	289	144	302	1.95e-39	140
MsaG040433	MtrunA17_Chr4g0068541	65.854	82	28	0	128	209	192	273	2.95e-35	131
MsaG040433	MtrunA17_Chr7g0218081	43.976	166	77	5	67	217	318	482	2.01e-31	122
MsaG040433	MtrunA17_Chr7g0218081	44.681	94	36	2	129	207	198	290	5.46e-16	78.2
MsaG040433	MtrunA17_Chr7g0224801	72.464	69	19	0	133	201	82	150	2.46e-31	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040433	AT2G47260.1	53.361	238	84	6	82	295	103	337	6.15e-62	199
MsaG040433	AT1G29860.1	48.295	176	69	3	128	295	120	281	2.68e-46	157
MsaG040433	AT3G62340.1	36.697	327	124	14	1	295	1	276	3.97e-46	157
MsaG040433	AT4G18170.1	69.388	98	29	1	111	207	138	235	1.11e-43	152
MsaG040433	AT5G49520.1	48.469	196	77	5	116	291	193	384	5.80e-43	152
MsaG040433	AT1G69310.4	46.286	175	84	3	117	291	120	284	4.51e-41	144
MsaG040433	AT1G69310.2	46.286	175	84	3	117	291	120	284	4.51e-41	144
MsaG040433	AT1G69310.1	46.286	175	84	3	117	291	120	284	4.51e-41	144
MsaG040433	AT5G46350.1	45.455	165	81	2	131	295	170	325	5.14e-39	139
MsaG040433	AT1G69310.3	44.000	175	84	4	117	291	120	280	1.61e-35	129

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Find 67 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGATTCTAGCTTCTCT+TGG	0.486828	7:-100161737	None:intergenic
AACCACCTTTGGAGAGTGAT+GGG	0.545230	7:+100161076	MsaT040433.1:CDS
AAGAAGAACGAGACATAATT+GGG	0.464348	7:-100162158	None:intergenic
AAGGAACAACATCTTGAAGA+AGG	0.565496	7:-100162395	None:intergenic
AAGGAGCTTCATGGAGTTAT+TGG	0.217692	7:+100160990	MsaT040433.1:CDS
AAGTTGGTGGTGCATTCAGC+TGG	0.549478	7:-100162213	None:intergenic
AATAGATGAAGAGTTAGGAG+TGG	0.618477	7:-100161145	None:intergenic
AATCCAAGGGTACAGGACAA+TGG	0.650442	7:+100162372	MsaT040433.1:CDS
AATTATGTCTCGTTCTTCTT+CGG	0.363102	7:+100162161	MsaT040433.1:CDS
ACACTTGGAAATGAGTAGCT+AGG	0.516517	7:-100160949	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	100160898	100162440	100160898	ID=MsaG040433
Chr7	mRNA	100160898	100162440	100160898	ID=MsaT040433.1;Parent=MsaG040433
Chr7	exon	100160898	100161244	100160898	ID=MsaT040433.1.exon1;Parent=MsaT040433.1
Chr7	CDS	100160898	100161244	100160898	ID=cds.MsaT040433.1;Parent=MsaT040433.1
Chr7	exon	100161706	100161849	100161706	ID=MsaT040433.1.exon2;Parent=MsaT040433.1
Chr7	CDS	100161706	100161849	100161706	ID=cds.MsaT040433.1;Parent=MsaT040433.1
Chr7	exon	100162044	100162440	100162044	ID=MsaT040433.1.exon3;Parent=MsaT040433.1
Chr7	CDS	100162044	100162440	100162044	ID=cds.MsaT040433.1;Parent=MsaT040433.1

Gene Sequence

>MsaT040433.1

ATGGAGAAAAAAGGTTTGAATATGGAGGATTATTCGAATATTGGATCTTTCCCTAGCTACTCATTTCCAAGTGTGTTTGATTTATCTGAAGAAAGGAGCTTCATGGAGTTATTGGGTGTGCAGCAGAACATGAACAACTATAGTGATAGTTTACTTGATTTGCCTGTGGTTGTAAAGGAACCACCTTTGGAGAGTGATGGGAATGGAAAAGAGTGTTCAGAGGTTTTGAATAGTCAACAACAACCTGCCACTCCTAACTCTTCATCTATTTCATCTGCTTCTAGTGAAGCAATCAATGATGAACACAATAAAACTGTTGACCAAACTAATAATCAACTCAACAAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACCAAGAGAAGCTAGAATCGCTTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTTAAAAATAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACACGTGGAGAGATCTTTGAGTGATCCAGCCATTGTTGTAACAACCTACGAAGGAAAGCACACACATCCAAACCCAATTATGTCTCGTTCTTCTTCGGCTGTTCGTGCCGGATCTCTATTACCACCACCAGCTGAATGCACCACCAACTTTGGTTCTGATCAAAACTACAATATATCCCAATATTATAGTCAGCAGCATCAGCAAGTACTCTTCAATACATTGTCGTCTTTGGGTTTCCCTTCAAAGAATATGAATGCTACTTTTTCTCAAGAGAGACCACTTTGTAATCCAAGGGTACAGGACAATGGCCTTCTTCAAGATGTTGTTCCTTCACATATGTTCAAGGAGGAGTAG

Protein sequence

>MsaT040433.1

MEKKGLNMEDYSNIGSFPSYSFPSVFDLSEERSFMELLGVQQNMNNYSDSLLDLPVVVKEPPLESDGNGKECSEVLNSQQQPATPNSSSISSASSEAINDEHNKTVDQTNNQLNKQLKAKKTNQKRPREARIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPAIVVTTYEGKHTHPNPIMSRSSSAVRAGSLLPPPAECTTNFGSDQNYNISQYYSQQHQQVLFNTLSSLGFPSKNMNATFSQERPLCNPRVQDNGLLQDVVPSHMFKEE*