AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040433 MtrunA17_Chr7g0270191 96.610 295 9 1 1 295 2 295 0.0 590
MsaG040433 MtrunA17_Chr1g0194481 61.290 310 75 17 20 295 27 325 5.72e-93 278
MsaG040433 MtrunA17_Chr2g0294231 40.909 308 128 11 34 295 73 372 2.51e-43 152
MsaG040433 MtrunA17_Chr5g0418781 46.561 189 70 5 118 291 98 270 5.44e-41 143
MsaG040433 MtrunA17_Chr4g0051881 48.276 174 71 6 131 292 165 331 9.86e-40 141
MsaG040433 MtrunA17_Chr5g0443131 47.879 165 74 3 131 289 144 302 1.95e-39 140
MsaG040433 MtrunA17_Chr4g0068541 65.854 82 28 0 128 209 192 273 2.95e-35 131
MsaG040433 MtrunA17_Chr7g0218081 43.976 166 77 5 67 217 318 482 2.01e-31 122
MsaG040433 MtrunA17_Chr7g0218081 44.681 94 36 2 129 207 198 290 5.46e-16 78.2
MsaG040433 MtrunA17_Chr7g0224801 72.464 69 19 0 133 201 82 150 2.46e-31 115
MsaG040433 MtrunA17_Chr5g0418191 59.524 84 34 0 129 212 305 388 2.69e-30 118
MsaG040433 MtrunA17_Chr5g0418191 61.290 62 21 2 144 203 151 211 5.36e-17 80.9
MsaG040433 MtrunA17_Chr1g0150801 61.250 80 31 0 123 202 81 160 1.48e-29 110
MsaG040433 MtrunA17_Chr5g0445311 60.227 88 34 1 128 215 348 434 3.65e-29 116
MsaG040433 MtrunA17_Chr5g0445311 38.776 147 82 5 145 288 201 342 2.83e-17 82.0
MsaG040433 MtrunA17_Chr8g0383251 42.424 132 69 2 80 209 47 173 4.07e-29 109
MsaG040433 MtrunA17_Chr7g0248721 45.833 144 55 4 67 201 68 197 5.74e-29 110
MsaG040433 MtrunA17_Chr4g0042831 45.968 124 63 1 90 209 220 343 7.08e-29 114
MsaG040433 MtrunA17_Chr4g0042831 55.000 60 27 0 144 203 145 204 9.69e-16 76.6
MsaG040433 MtrunA17_Chr3g0079691 62.069 87 32 1 128 214 479 564 8.70e-29 115
MsaG040433 MtrunA17_Chr3g0079691 58.209 67 27 1 144 210 280 345 3.08e-17 82.0
MsaG040433 MtrunA17_Chr3g0129361 46.281 121 59 1 86 200 80 200 9.77e-29 109
MsaG040433 MtrunA17_Chr8g0335811 46.218 119 60 2 86 200 92 210 3.54e-28 108
MsaG040433 MtrunA17_Chr3g0101131 59.756 82 33 0 128 209 399 480 7.90e-28 112
MsaG040433 MtrunA17_Chr3g0101131 57.812 64 26 1 144 207 243 305 5.34e-16 78.2
MsaG040433 MtrunA17_Chr7g0263531 60.526 76 30 0 129 204 346 421 1.47e-27 110
MsaG040433 MtrunA17_Chr7g0263531 52.055 73 34 1 145 217 190 261 3.95e-17 81.3
MsaG040433 MtrunA17_Chr3g0106491 44.776 134 60 2 83 203 292 424 7.77e-27 109
MsaG040433 MtrunA17_Chr3g0106491 54.688 64 28 1 144 207 198 260 4.93e-16 78.2
MsaG040433 MtrunA17_Chr8g0383351 63.514 74 26 1 128 200 143 216 1.08e-26 104
MsaG040433 MtrunA17_Chr4g0004911 58.442 77 32 0 128 204 320 396 3.10e-26 107
MsaG040433 MtrunA17_Chr4g0004911 47.778 90 41 2 144 231 184 269 1.34e-18 85.5
MsaG040433 MtrunA17_Chr5g0432161 44.262 122 67 1 89 210 367 487 3.59e-26 107
MsaG040433 MtrunA17_Chr5g0432161 55.000 60 26 1 144 203 244 302 1.23e-14 73.9
MsaG040433 MtrunA17_Chr7g0243891 56.098 82 36 0 128 209 358 439 3.80e-26 107
MsaG040433 MtrunA17_Chr7g0243891 48.315 89 38 2 144 232 216 296 8.40e-18 83.6
MsaG040433 MtrunA17_Chr7g0249311 59.211 76 31 0 128 203 376 451 1.85e-25 106
MsaG040433 MtrunA17_Chr7g0249311 58.209 67 27 1 144 210 179 244 7.74e-17 80.9
MsaG040433 MtrunA17_Chr7g0249301 57.895 76 32 0 128 203 276 351 3.04e-25 103
MsaG040433 MtrunA17_Chr7g0249301 53.623 69 31 1 143 211 61 128 8.47e-16 77.0
MsaG040433 MtrunA17_Chr3g0129321 52.632 76 36 0 131 206 105 180 7.82e-25 99.0
MsaG040433 MtrunA17_Chr8g0386241 46.875 96 45 2 112 201 65 160 3.38e-24 96.7
MsaG040433 MtrunA17_Chr1g0188941 50.000 80 38 1 128 205 35 114 6.25e-24 94.0
MsaG040433 MtrunA17_Chr7g0238921 40.132 152 77 5 144 288 124 268 1.30e-23 98.2
MsaG040433 MtrunA17_Chr2g0288871 53.247 77 35 1 128 203 289 365 1.86e-22 97.1
MsaG040433 MtrunA17_Chr4g0075201 50.649 77 37 1 128 203 251 327 3.09e-22 96.3
MsaG040433 MtrunA17_Chr1g0147881 36.364 143 85 5 63 200 178 319 5.16e-22 94.4
MsaG040433 MtrunA17_Chr2g0333851 49.383 81 38 2 126 203 149 229 7.23e-22 93.6
MsaG040433 MtrunA17_Chr7g0270831 45.652 92 45 2 128 214 200 291 1.24e-21 94.0
MsaG040433 MtrunA17_Chr5g0447701 56.000 75 33 0 129 203 237 311 1.32e-21 93.6
MsaG040433 MtrunA17_Chr5g0447701 50.000 60 29 1 144 203 92 150 3.81e-11 63.2
MsaG040433 MtrunA17_Chr2g0322391 45.652 92 44 2 128 213 333 424 1.60e-21 94.4
MsaG040433 MtrunA17_Chr5g0401821 48.193 83 42 1 119 200 174 256 1.80e-21 91.7
MsaG040433 MtrunA17_Chr3g0099641 43.617 94 50 2 128 218 235 328 2.50e-21 93.6
MsaG040433 MtrunA17_Chr4g0051181 48.718 78 39 1 128 204 227 304 3.27e-21 93.2
MsaG040433 MtrunA17_Chr4g0074001 38.655 119 73 0 86 204 301 419 5.67e-21 92.8
MsaG040433 MtrunA17_Chr2g0302391 38.158 152 72 7 128 273 195 330 6.61e-21 92.0
MsaG040433 MtrunA17_Chr6g0485431 40.196 102 50 2 131 221 141 242 6.78e-21 91.3
MsaG040433 MtrunA17_Chr4g0060271 41.748 103 51 2 103 204 222 316 2.99e-20 90.9
MsaG040433 MtrunA17_Chr1g0189391 48.750 80 39 2 131 209 84 162 8.41e-20 87.8
MsaG040433 MtrunA17_Chr4g0025061 39.552 134 68 5 87 212 305 433 4.61e-19 87.4
MsaG040433 MtrunA17_Chr4g0053281 47.619 84 42 2 119 200 240 323 5.06e-19 85.9
MsaG040433 MtrunA17_Chr7g0216891 41.237 97 48 2 106 201 189 277 6.47e-19 86.7
MsaG040433 MtrunA17_Chr4g0025051 42.697 89 46 2 129 212 320 408 1.27e-18 85.9
MsaG040433 MtrunA17_Chr4g0001361 43.878 98 44 4 125 211 133 230 1.41e-18 84.3
MsaG040433 MtrunA17_Chr4g0071521 40.449 89 52 1 119 206 220 308 1.73e-18 84.0
MsaG040433 MtrunA17_Chr1g0150281 55.000 60 26 1 142 200 138 197 2.19e-18 83.2
MsaG040433 MtrunA17_Chr8g0348311 40.206 97 56 2 109 203 119 215 3.22e-18 83.6
MsaG040433 MtrunA17_Chr3g0136961 50.000 72 33 2 142 210 136 207 9.21e-18 81.6
MsaG040433 MtrunA17_Chr7g0270051 47.761 67 34 1 145 210 54 120 1.58e-17 80.5
MsaG040433 MtrunA17_Chr7g0248691 45.679 81 42 2 145 223 155 235 2.50e-17 80.9
MsaG040433 MtrunA17_Chr1g0184691 45.946 74 39 1 128 200 277 350 2.76e-17 81.3
MsaG040433 MtrunA17_Chr8g0379461 41.860 86 48 2 145 229 77 161 3.55e-17 79.0
MsaG040433 MtrunA17_Chr8g0387501 46.154 78 40 2 143 218 128 205 7.99e-17 78.6
MsaG040433 MtrunA17_Chr3g0139021 46.341 82 42 2 120 200 291 371 8.84e-17 80.1
MsaG040433 MtrunA17_Chr2g0293481 55.000 60 26 1 145 203 268 327 1.11e-16 80.1
MsaG040433 MtrunA17_Chr1g0150271 44.872 78 40 2 143 217 100 177 2.00e-16 77.4
MsaG040433 MtrunA17_Chr5g0432071 43.158 95 47 3 144 232 104 197 1.65e-15 73.9
MsaG040433 MtrunA17_Chr8g0387981 36.296 135 76 5 72 199 59 190 2.05e-15 75.5
MsaG040433 MtrunA17_Chr2g0284321 50.000 60 29 1 145 203 36 95 4.33e-15 72.8
MsaG040433 MtrunA17_Chr7g0275531 40.206 97 54 2 106 199 81 176 9.39e-15 73.6
MsaG040433 MtrunA17_Chr7g0228941 46.479 71 37 1 131 200 39 109 1.41e-14 68.9
MsaG040433 MtrunA17_Chr2g0319961 50.820 61 29 1 145 204 81 141 3.76e-14 70.9
MsaG040433 MtrunA17_Chr8g0347251 41.176 85 46 2 118 199 111 194 7.57e-14 70.9
MsaG040433 MtrunA17_Chr1g0202461 50.000 60 29 1 145 203 262 321 9.90e-14 70.9
MsaG040433 MtrunA17_Chr3g0126391 51.667 60 26 1 143 199 132 191 1.35e-13 70.1
MsaG040433 MtrunA17_Chr2g0315361 40.000 90 46 2 118 199 117 206 2.33e-13 69.3
MsaG040433 MtrunA17_Chr2g0289181 41.096 73 40 2 132 203 4 74 2.33e-13 68.2
MsaG040433 MtrunA17_Chr2g0315381 48.333 60 28 1 143 199 143 202 3.13e-13 68.9
MsaG040433 MtrunA17_Chr4g0024391 37.500 80 49 1 129 207 214 293 3.64e-13 69.3
MsaG040433 MtrunA17_Chr5g0447711 42.667 75 43 0 129 203 215 289 4.40e-13 68.6
MsaG040433 MtrunA17_Chr7g0244981 50.847 59 26 1 144 199 122 180 5.52e-13 67.8
MsaG040433 MtrunA17_Chr7g0244971 46.667 60 29 1 143 199 122 181 7.12e-12 64.7
MsaG040433 MtrunA17_Chr5g0419241 53.488 43 20 0 128 170 61 103 1.33e-11 60.5
MsaG040433 MtrunA17_Chr5g0402931 44.068 59 31 1 143 201 122 178 3.17e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040433 AT2G47260.1 53.361 238 84 6 82 295 103 337 6.15e-62 199
MsaG040433 AT1G29860.1 48.295 176 69 3 128 295 120 281 2.68e-46 157
MsaG040433 AT3G62340.1 36.697 327 124 14 1 295 1 276 3.97e-46 157
MsaG040433 AT4G18170.1 69.388 98 29 1 111 207 138 235 1.11e-43 152
MsaG040433 AT5G49520.1 48.469 196 77 5 116 291 193 384 5.80e-43 152
MsaG040433 AT1G69310.4 46.286 175 84 3 117 291 120 284 4.51e-41 144
MsaG040433 AT1G69310.2 46.286 175 84 3 117 291 120 284 4.51e-41 144
MsaG040433 AT1G69310.1 46.286 175 84 3 117 291 120 284 4.51e-41 144
MsaG040433 AT5G46350.1 45.455 165 81 2 131 295 170 325 5.14e-39 139
MsaG040433 AT1G69310.3 44.000 175 84 4 117 291 120 280 1.61e-35 129
MsaG040433 AT5G13080.1 70.423 71 21 0 131 201 54 124 4.20e-31 114
MsaG040433 AT2G03340.1 42.177 147 79 3 70 213 341 484 5.69e-31 121
MsaG040433 AT2G03340.1 60.000 60 23 1 144 203 250 308 3.31e-16 79.0
MsaG040433 AT3G01970.1 69.014 71 22 0 130 200 51 121 7.18e-31 113
MsaG040433 AT5G41570.1 59.140 93 35 2 110 201 65 155 1.23e-30 114
MsaG040433 AT1G13960.2 61.538 91 35 0 129 219 241 331 2.64e-30 117
MsaG040433 AT1G13960.2 60.000 60 23 1 144 203 76 134 2.20e-16 79.0
MsaG040433 AT4G39410.1 55.238 105 45 2 117 220 195 298 7.15e-30 115
MsaG040433 AT1G13960.1 68.056 72 23 0 129 200 394 465 7.53e-30 118
MsaG040433 AT1G13960.1 60.000 60 23 1 144 203 229 287 1.97e-16 79.7
MsaG040433 AT1G64000.1 69.014 71 22 0 131 201 101 171 1.26e-29 111
MsaG040433 AT5G07100.2 44.800 125 68 1 85 208 81 205 2.16e-29 111
MsaG040433 AT5G07100.2 49.275 69 35 0 144 212 24 92 1.69e-15 74.3
MsaG040433 AT5G07100.4 44.800 125 68 1 85 208 81 205 2.16e-29 111
MsaG040433 AT5G07100.4 49.275 69 35 0 144 212 24 92 1.69e-15 74.3
MsaG040433 AT5G07100.5 44.800 125 68 1 85 208 81 205 2.16e-29 111
MsaG040433 AT5G07100.5 49.275 69 35 0 144 212 24 92 1.69e-15 74.3
MsaG040433 AT5G07100.3 44.800 125 68 1 85 208 81 205 2.16e-29 111
MsaG040433 AT5G07100.3 49.275 69 35 0 144 212 24 92 1.69e-15 74.3
MsaG040433 AT2G44745.1 52.941 102 47 1 99 200 101 201 4.54e-29 110
MsaG040433 AT4G26640.5 42.763 152 79 3 66 210 120 270 5.90e-29 114
MsaG040433 AT4G26640.5 54.930 71 31 1 144 214 35 104 2.00e-16 79.3
MsaG040433 AT4G26640.6 42.763 152 79 3 66 210 120 270 5.90e-29 114
MsaG040433 AT4G26640.6 54.930 71 31 1 144 214 35 104 2.00e-16 79.3
MsaG040433 AT4G26640.4 42.763 152 79 3 66 210 120 270 5.90e-29 114
MsaG040433 AT4G26640.4 54.930 71 31 1 144 214 35 104 2.00e-16 79.3
MsaG040433 AT4G26640.3 42.763 152 79 3 66 210 120 270 5.90e-29 114
MsaG040433 AT4G26640.3 54.930 71 31 1 144 214 35 104 2.00e-16 79.3
MsaG040433 AT5G07100.1 44.800 125 68 1 85 208 174 298 7.67e-29 112
MsaG040433 AT5G07100.1 49.275 69 35 0 144 212 117 185 3.63e-15 74.7
MsaG040433 AT2G46130.1 62.338 77 29 0 125 201 11 87 9.51e-29 106
MsaG040433 AT4G26640.1 42.763 152 79 3 66 210 224 374 1.16e-28 114
MsaG040433 AT4G26640.1 54.930 71 31 1 144 214 139 208 2.90e-16 79.3
MsaG040433 AT4G26640.7 42.763 152 79 3 66 210 256 406 1.24e-28 115
MsaG040433 AT4G26640.7 54.930 71 31 1 144 214 171 240 3.24e-16 79.0
MsaG040433 AT4G26640.2 42.763 152 79 3 66 210 296 446 1.71e-28 114
MsaG040433 AT4G26640.2 54.930 71 31 1 144 214 211 280 3.19e-16 79.3
MsaG040433 AT3G01080.2 55.056 89 40 0 115 203 315 403 5.57e-28 112
MsaG040433 AT3G01080.2 52.941 68 31 1 144 211 205 271 8.16e-16 77.8
MsaG040433 AT3G01080.1 55.056 89 40 0 115 203 277 365 7.06e-28 112
MsaG040433 AT3G01080.1 52.941 68 31 1 144 211 167 233 9.53e-16 77.4
MsaG040433 AT2G38470.1 56.818 88 38 0 125 212 343 430 1.70e-27 111
MsaG040433 AT2G38470.1 43.137 102 55 3 103 203 143 242 1.29e-15 77.4
MsaG040433 AT4G26440.1 59.551 89 35 1 128 216 356 443 3.52e-27 111
MsaG040433 AT4G26440.1 49.315 73 36 1 144 216 178 249 3.48e-15 76.3
MsaG040433 AT5G26170.1 60.563 71 28 0 130 200 99 169 3.82e-27 104
MsaG040433 AT5G56270.1 61.842 76 29 0 128 203 471 546 2.90e-26 108
MsaG040433 AT5G56270.1 55.224 67 29 1 144 210 273 338 2.35e-15 76.6
MsaG040433 AT2G04880.2 61.333 75 29 0 129 203 268 342 4.27e-26 107
MsaG040433 AT2G04880.2 56.452 62 26 1 143 204 110 170 3.53e-16 79.0
MsaG040433 AT2G04880.1 61.333 75 29 0 129 203 292 366 5.11e-26 107
MsaG040433 AT2G04880.1 56.452 62 26 1 143 204 110 170 3.79e-16 79.0
MsaG040433 AT5G64810.1 50.000 82 41 0 119 200 85 166 2.07e-25 100
MsaG040433 AT2G21900.1 51.765 85 36 2 124 203 84 168 1.02e-24 99.0
MsaG040433 AT1G55600.1 42.991 107 57 1 97 203 264 366 1.02e-24 103
MsaG040433 AT2G37260.3 46.018 113 46 2 120 232 246 343 1.14e-24 102
MsaG040433 AT2G37260.3 44.792 96 48 3 145 236 86 180 3.06e-16 78.2
MsaG040433 AT2G37260.2 46.018 113 46 2 120 232 244 341 1.28e-24 102
MsaG040433 AT2G37260.2 44.792 96 48 3 145 236 84 178 3.52e-16 78.2
MsaG040433 AT2G37260.1 46.018 113 46 2 120 232 326 423 2.79e-24 102
MsaG040433 AT2G37260.1 33.152 184 108 6 67 236 78 260 1.49e-16 79.7
MsaG040433 AT4G04450.2 48.936 94 45 2 128 218 182 275 8.91e-24 100
MsaG040433 AT2G30250.1 54.878 82 37 0 128 209 312 393 1.97e-23 99.4
MsaG040433 AT2G30250.1 39.815 108 58 2 145 246 167 273 3.99e-13 69.7
MsaG040433 AT4G04450.1 48.936 94 45 2 128 218 276 369 2.58e-23 100
MsaG040433 AT2G46130.2 57.143 77 29 1 125 201 11 83 2.60e-23 92.4
MsaG040433 AT1G68150.1 30.220 182 110 4 40 204 115 296 2.76e-23 98.6
MsaG040433 AT2G30590.1 47.619 84 43 1 119 201 288 371 3.28e-21 92.8
MsaG040433 AT1G62300.1 47.619 84 43 1 121 203 289 372 3.35e-21 94.0
MsaG040433 AT4G22070.4 50.649 77 37 1 128 203 281 357 4.40e-21 93.6
MsaG040433 AT4G22070.3 50.649 77 37 1 128 203 281 357 4.40e-21 93.6
MsaG040433 AT4G22070.2 50.649 77 37 1 128 203 281 357 4.40e-21 93.6
MsaG040433 AT4G22070.1 50.649 77 37 1 128 203 281 357 4.40e-21 93.6
MsaG040433 AT4G01720.1 50.649 77 37 1 128 203 223 299 2.28e-20 91.3
MsaG040433 AT4G31550.2 46.341 82 43 1 120 200 221 302 4.97e-20 89.0
MsaG040433 AT4G31800.2 48.000 75 38 1 143 216 110 184 1.39e-19 86.3
MsaG040433 AT4G31550.1 46.429 84 42 2 118 200 222 303 1.51e-19 87.4
MsaG040433 AT4G31800.1 48.000 75 38 1 143 216 175 249 2.57e-19 86.7
MsaG040433 AT2G25000.2 52.857 70 32 1 143 211 102 171 3.00e-19 84.7
MsaG040433 AT2G25000.4 52.857 70 32 1 143 211 102 171 3.00e-19 84.7
MsaG040433 AT4G30935.1 56.667 60 26 0 145 204 332 391 4.09e-19 87.4
MsaG040433 AT1G80840.1 53.226 62 28 1 143 203 145 206 4.18e-19 85.9
MsaG040433 AT5G43290.1 61.404 57 22 0 144 200 114 170 4.38e-19 85.5
MsaG040433 AT2G25000.3 52.857 70 32 1 143 211 124 193 5.51e-19 84.7
MsaG040433 AT1G18860.1 46.753 77 40 1 128 203 223 299 6.66e-19 87.0
MsaG040433 AT2G25000.1 52.857 70 32 1 143 211 145 214 8.18e-19 84.7
MsaG040433 AT5G15130.2 41.489 94 50 2 124 212 165 258 8.86e-19 86.7
MsaG040433 AT5G15130.1 41.489 94 50 2 124 212 207 300 9.46e-19 86.7
MsaG040433 AT1G30650.1 44.118 102 51 3 108 204 178 278 3.17e-18 84.7
MsaG040433 AT4G24240.1 44.578 83 45 1 119 200 256 338 4.36e-18 83.6
MsaG040433 AT2G23320.1 45.783 83 44 1 119 200 215 297 5.15e-18 83.2
MsaG040433 AT1G29280.1 52.381 63 29 1 145 206 75 137 7.37e-18 81.6
MsaG040433 AT2G24570.1 41.489 94 53 2 114 205 212 305 7.89e-18 82.4
MsaG040433 AT5G52830.1 47.126 87 39 3 118 203 145 225 1.09e-17 82.4
MsaG040433 AT5G28650.1 40.217 92 54 1 119 209 237 328 1.66e-17 81.6
MsaG040433 AT3G04670.1 40.217 92 54 1 119 209 237 328 1.89e-17 81.6
MsaG040433 AT4G01250.1 55.000 60 26 1 145 203 129 188 1.06e-16 79.0
MsaG040433 AT2G34830.2 55.000 60 26 1 145 203 225 284 1.59e-16 79.7
MsaG040433 AT2G34830.1 55.000 60 26 1 145 203 216 275 1.69e-16 79.7
MsaG040433 AT5G45050.4 38.462 117 65 2 96 205 987 1103 3.86e-16 79.3
MsaG040433 AT5G45050.1 38.462 117 65 2 96 205 1126 1242 3.87e-16 79.3
MsaG040433 AT5G45050.2 38.462 117 65 2 96 205 1098 1214 4.19e-16 79.3
MsaG040433 AT3G01080.3 58.333 60 24 1 144 203 205 263 4.20e-16 77.8
MsaG040433 AT3G58710.1 42.857 91 47 2 118 203 41 131 1.46e-15 75.5
MsaG040433 AT3G58710.2 41.000 100 53 3 110 203 31 130 1.73e-15 75.1
MsaG040433 AT1G69810.2 40.659 91 49 3 128 216 129 216 5.36e-15 74.7
MsaG040433 AT1G69810.1 40.659 91 49 3 128 216 187 274 5.87e-15 75.1
MsaG040433 AT4G23550.1 43.529 85 46 2 139 221 135 219 1.96e-14 72.8
MsaG040433 AT2G46400.1 37.079 89 53 1 117 202 77 165 1.16e-13 70.5
MsaG040433 AT1G66560.1 49.153 59 27 1 144 199 103 161 1.91e-13 69.3
MsaG040433 AT4G11070.2 41.758 91 49 2 112 199 78 167 5.67e-13 68.2
MsaG040433 AT4G11070.1 41.758 91 49 2 112 199 110 199 7.38e-13 68.2
MsaG040433 AT4G12020.6 52.542 59 27 1 145 203 469 526 9.61e-13 69.3
MsaG040433 AT4G12020.6 70.270 37 11 0 128 164 625 661 1.71e-11 65.5
MsaG040433 AT4G12020.8 52.542 59 27 1 145 203 469 526 9.61e-13 69.3
MsaG040433 AT4G12020.8 70.270 37 11 0 128 164 625 661 1.71e-11 65.5
MsaG040433 AT4G12020.7 50.000 62 30 1 142 203 466 526 1.01e-12 68.9
MsaG040433 AT4G12020.7 70.270 37 11 0 128 164 625 661 1.85e-11 65.1
MsaG040433 AT4G12020.3 50.000 62 30 1 142 203 466 526 1.02e-12 68.9
MsaG040433 AT4G12020.3 70.270 37 11 0 128 164 625 661 1.79e-11 65.5
MsaG040433 AT4G12020.10 52.542 59 27 1 145 203 469 526 1.04e-12 68.9
MsaG040433 AT4G12020.10 70.270 37 11 0 128 164 625 661 1.76e-11 65.5
MsaG040433 AT4G12020.1 50.000 62 30 1 142 203 466 526 1.07e-12 68.9
MsaG040433 AT4G12020.1 70.270 37 11 0 128 164 625 661 1.88e-11 65.1
MsaG040433 AT4G12020.9 50.000 62 30 1 142 203 466 526 1.07e-12 68.9
MsaG040433 AT4G12020.9 70.270 37 11 0 128 164 625 661 1.88e-11 65.1
MsaG040433 AT4G12020.2 50.000 62 30 1 142 203 466 526 1.08e-12 68.9
MsaG040433 AT4G12020.2 70.270 37 11 0 128 164 625 661 1.89e-11 65.1
MsaG040433 AT4G12020.4 52.542 59 27 1 145 203 469 526 1.13e-12 68.9
MsaG040433 AT4G12020.4 70.270 37 11 0 128 164 625 661 1.89e-11 65.1
MsaG040433 AT4G12020.5 52.542 59 27 1 145 203 402 459 1.19e-12 68.9
MsaG040433 AT4G12020.5 70.270 37 11 0 128 164 558 594 1.96e-11 65.1
MsaG040433 AT4G12020.11 46.377 69 36 1 142 210 466 533 1.25e-12 68.6
MsaG040433 AT4G12020.11 70.270 37 11 0 128 164 625 661 1.98e-11 65.1
MsaG040433 AT3G56400.1 38.372 86 47 2 117 199 96 178 1.77e-12 67.0
MsaG040433 AT5G24110.1 34.259 108 58 4 117 219 84 183 3.28e-12 66.2
MsaG040433 AT1G66550.2 39.535 86 40 3 145 221 104 186 5.94e-12 64.7
MsaG040433 AT2G40740.1 46.479 71 35 1 144 211 173 243 6.26e-12 65.5
MsaG040433 AT2G40740.3 46.479 71 35 1 144 211 182 252 6.27e-12 65.5
MsaG040433 AT1G66550.1 39.535 86 40 3 145 221 109 191 6.78e-12 64.7
MsaG040433 AT5G45260.1 37.349 83 49 1 124 203 1188 1270 2.02e-11 65.1
MsaG040433 AT4G23810.1 49.153 59 27 1 144 199 158 216 3.87e-11 63.2
MsaG040433 AT5G22570.1 48.276 58 27 1 145 199 111 168 4.71e-11 62.8
MsaG040433 AT2G40750.1 47.458 59 28 1 144 199 152 210 7.07e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAATACATTGTCGTCTT+TGG 0.201669 7:+100162296 MsaT040433.1:CDS
AAGGAGCTTCATGGAGTTAT+TGG 0.217692 7:+100160990 MsaT040433.1:CDS
GAAGAAGAACGAGACATAAT+TGG 0.261796 7:-100162159 None:intergenic
ATGGAGGATTATTCGAATAT+TGG 0.275837 7:+100160919 MsaT040433.1:CDS
GATGCTGCTGACTATAATAT+TGG 0.280170 7:-100162263 None:intergenic
TTCAATACATTGTCGTCTTT+GGG 0.295835 7:+100162297 MsaT040433.1:CDS
TGTTGAGTTGATTATTAGTT+TGG 0.336655 7:-100161218 None:intergenic
AATTATGTCTCGTTCTTCTT+CGG 0.363102 7:+100162161 MsaT040433.1:CDS
GATGAAGAGTTAGGAGTGGC+AGG 0.379102 7:-100161141 None:intergenic
GGTTGTAAAGGAACCACCTT+TGG 0.394614 7:+100161065 MsaT040433.1:CDS
GAACGAGACATAATTGGGTT+TGG 0.394670 7:-100162153 None:intergenic
ATCTGAAGAAAGGAGCTTCA+TGG 0.399237 7:+100160981 MsaT040433.1:CDS
AGGAGCTTCATGGAGTTATT+GGG 0.399801 7:+100160991 MsaT040433.1:CDS
GAAAAGCGAGGTGGATCATC+TGG 0.414478 7:+100161766 MsaT040433.1:CDS
GATGAAATAGATGAAGAGTT+AGG 0.420106 7:-100161150 None:intergenic
TATTGGACTGACCTTGGAAA+GGG 0.432987 7:-100161839 None:intergenic
GCTGAATGCACCACCAACTT+TGG 0.436903 7:+100162216 MsaT040433.1:CDS
ATTATTGGGGTTAAGGTTGA+AGG 0.444402 7:+100161691 MsaT040433.1:intron
GTAGCATTCATATTCTTTGA+AGG 0.456358 7:-100162324 None:intergenic
TCTTCTTCGGCTGTTCGTGC+CGG 0.460798 7:+100162174 MsaT040433.1:CDS
AAGAAGAACGAGACATAATT+GGG 0.464348 7:-100162158 None:intergenic
AGGCCATTGTCCTGTACCCT+TGG 0.466063 7:-100162375 None:intergenic
TGTTTGATTTATCTGAAGAA+AGG 0.471881 7:+100160971 MsaT040433.1:CDS
TGTTCCTTCACATATGTTCA+AGG 0.476657 7:+100162410 MsaT040433.1:CDS
TAGGTTGTTACAACAATGGC+TGG 0.477731 7:-100162111 None:intergenic
ATGCTGCTGACTATAATATT+GGG 0.483227 7:-100162262 None:intergenic
AAAGCGATTCTAGCTTCTCT+TGG 0.486828 7:-100161737 None:intergenic
TAGCATTCATATTCTTTGAA+GGG 0.492165 7:-100162323 None:intergenic
GAGGTGGATCATCTGGAAGA+TGG 0.513204 7:+100161773 MsaT040433.1:CDS
ACACTTGGAAATGAGTAGCT+AGG 0.516517 7:-100160949 None:intergenic
CTTCACATTACATGAAACAC+TGG 0.528954 7:-100162061 None:intergenic
CCATTCCCATCACTCTCCAA+AGG 0.531548 7:-100161081 None:intergenic
CACTTGGAAATGAGTAGCTA+GGG 0.534179 7:-100160948 None:intergenic
TGGTGGTGGTAATAGAGATC+CGG 0.534417 7:-100162193 None:intergenic
ATCTGGAAGATGGGTACAGA+TGG 0.534825 7:+100161783 MsaT040433.1:CDS
ATGTGTGTGCTTTCCTTCGT+AGG 0.535338 7:-100162130 None:intergenic
GGTGGTTCCTTTACAACCAC+AGG 0.538122 7:-100161060 None:intergenic
TTGATCAGAACCAAAGTTGG+TGG 0.538546 7:-100162226 None:intergenic
TGATTTGCCTGTGGTTGTAA+AGG 0.540038 7:+100161053 MsaT040433.1:CDS
AACCACCTTTGGAGAGTGAT+GGG 0.545230 7:+100161076 MsaT040433.1:CDS
AGAGACCACTTTGTAATCCA+AGG 0.545703 7:+100162358 MsaT040433.1:CDS
AAGTTGGTGGTGCATTCAGC+TGG 0.549478 7:-100162213 None:intergenic
GAACCACCTTTGGAGAGTGA+TGG 0.558173 7:+100161075 MsaT040433.1:CDS
GTGGTGCATTCAGCTGGTGG+TGG 0.564170 7:-100162207 None:intergenic
AAGGAACAACATCTTGAAGA+AGG 0.565496 7:-100162395 None:intergenic
AGGTGGATCATCTGGAAGAT+GGG 0.567407 7:+100161774 MsaT040433.1:CDS
ACTTTGTAATCCAAGGGTAC+AGG 0.572303 7:+100162365 MsaT040433.1:CDS
GGGTACAGATGGAGAAAGTA+CGG 0.573593 7:+100161794 MsaT040433.1:CDS
TCAGATAAATCAAACACACT+TGG 0.573947 7:-100160964 None:intergenic
TTCGTAGGTTGTTACAACAA+TGG 0.575559 7:-100162115 None:intergenic
ATATTGGACTGACCTTGGAA+AGG 0.575592 7:-100161840 None:intergenic
TAGTTTACTTGATTTGCCTG+TGG 0.610972 7:+100161044 MsaT040433.1:CDS
TTGGTGGTGCATTCAGCTGG+TGG 0.617490 7:-100162210 None:intergenic
AATAGATGAAGAGTTAGGAG+TGG 0.618477 7:-100161145 None:intergenic
TCCTCCTTGAACATATGTGA+AGG 0.619921 7:-100162414 None:intergenic
TGTACCCTTGGATTACAAAG+TGG 0.631750 7:-100162363 None:intergenic
TTCCCATCACTCTCCAAAGG+TGG 0.633730 7:-100161078 None:intergenic
ATTGGACTGACCTTGGAAAG+GGG 0.644385 7:-100161838 None:intergenic
GAGACCACTTTGTAATCCAA+GGG 0.645369 7:+100162359 MsaT040433.1:CDS
AATCCAAGGGTACAGGACAA+TGG 0.650442 7:+100162372 MsaT040433.1:CDS
GAATGGAAAAGAGTGTTCAG+AGG 0.653706 7:+100161098 MsaT040433.1:CDS
TCCTTCACATATGTTCAAGG+AGG 0.657130 7:+100162413 MsaT040433.1:CDS
CGCTTTCATGACGAAAAGCG+AGG 0.659806 7:+100161754 MsaT040433.1:CDS
CCTTTGGAGAGTGATGGGAA+TGG 0.667441 7:+100161081 MsaT040433.1:CDS
TTTCATGACGAAAAGCGAGG+TGG 0.682863 7:+100161757 MsaT040433.1:CDS
ATTGTTGTAACAACCTACGA+AGG 0.722353 7:+100162117 MsaT040433.1:CDS
ATGTAATGTGAAGAAACACG+TGG 0.727622 7:+100162071 MsaT040433.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 100160898 100162440 100160898 ID=MsaG040433
Chr7 mRNA 100160898 100162440 100160898 ID=MsaT040433.1;Parent=MsaG040433
Chr7 exon 100160898 100161244 100160898 ID=MsaT040433.1.exon1;Parent=MsaT040433.1
Chr7 CDS 100160898 100161244 100160898 ID=cds.MsaT040433.1;Parent=MsaT040433.1
Chr7 exon 100161706 100161849 100161706 ID=MsaT040433.1.exon2;Parent=MsaT040433.1
Chr7 CDS 100161706 100161849 100161706 ID=cds.MsaT040433.1;Parent=MsaT040433.1
Chr7 exon 100162044 100162440 100162044 ID=MsaT040433.1.exon3;Parent=MsaT040433.1
Chr7 CDS 100162044 100162440 100162044 ID=cds.MsaT040433.1;Parent=MsaT040433.1
Gene Sequence

>MsaT040433.1

ATGGAGAAAAAAGGTTTGAATATGGAGGATTATTCGAATATTGGATCTTTCCCTAGCTACTCATTTCCAAGTGTGTTTGATTTATCTGAAGAAAGGAGCTTCATGGAGTTATTGGGTGTGCAGCAGAACATGAACAACTATAGTGATAGTTTACTTGATTTGCCTGTGGTTGTAAAGGAACCACCTTTGGAGAGTGATGGGAATGGAAAAGAGTGTTCAGAGGTTTTGAATAGTCAACAACAACCTGCCACTCCTAACTCTTCATCTATTTCATCTGCTTCTAGTGAAGCAATCAATGATGAACACAATAAAACTGTTGACCAAACTAATAATCAACTCAACAAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACCAAGAGAAGCTAGAATCGCTTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTTAAAAATAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACACGTGGAGAGATCTTTGAGTGATCCAGCCATTGTTGTAACAACCTACGAAGGAAAGCACACACATCCAAACCCAATTATGTCTCGTTCTTCTTCGGCTGTTCGTGCCGGATCTCTATTACCACCACCAGCTGAATGCACCACCAACTTTGGTTCTGATCAAAACTACAATATATCCCAATATTATAGTCAGCAGCATCAGCAAGTACTCTTCAATACATTGTCGTCTTTGGGTTTCCCTTCAAAGAATATGAATGCTACTTTTTCTCAAGAGAGACCACTTTGTAATCCAAGGGTACAGGACAATGGCCTTCTTCAAGATGTTGTTCCTTCACATATGTTCAAGGAGGAGTAG
Protein sequence

>MsaT040433.1

MEKKGLNMEDYSNIGSFPSYSFPSVFDLSEERSFMELLGVQQNMNNYSDSLLDLPVVVKEPPLESDGNGKECSEVLNSQQQPATPNSSSISSASSEAINDEHNKTVDQTNNQLNKQLKAKKTNQKRPREARIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPAIVVTTYEGKHTHPNPIMSRSSSAVRAGSLLPPPAECTTNFGSDQNYNISQYYSQQHQQVLFNTLSSLGFPSKNMNATFSQERPLCNPRVQDNGLLQDVVPSHMFKEE*