AlfalfaGEDB | MsaG040441

M. sativa ssp. caerulea / MsaG040441

KEGG: K11324
GO: GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16282.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040441	XP_003626001.1	99.307	433	3	0	1	433	1	433	0.0	893

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040441	sp\|Q8VZL6\|SWC4_ARATH	69.841	441	120	6	2	433	5	441	0.0	607

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040441	tr\|G7KTN9\|G7KTN9_MEDTR	99.307	433	3	0	1	433	1	433	0.0	893

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040441	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000314	MsaG040441	0.800269	2.608090e-48	3.547708e-46
MsaG000336	MsaG040441	0.813285	4.763711e-51	8.820270e-49
MsaG000372	MsaG040441	0.837751	7.930707e-57	2.886473e-54
MsaG000403	MsaG040441	0.849387	6.345130e-60	3.368116e-57
MsaG000455	MsaG040441	0.854733	1.952794e-61	1.249558e-58
MsaG000620	MsaG040441	0.815692	1.406595e-51	2.767128e-49
MsaG000730	MsaG040441	0.831204	3.436383e-55	1.029387e-52
MsaG000791	MsaG040441	0.832578	1.579056e-55	4.923489e-53
MsaG000858	MsaG040441	0.812289	7.851273e-51	1.418070e-48
MsaG000932	MsaG040441	0.812281	7.886282e-51	1.424087e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040441	MtrunA17_Chr7g0270251	99.307	433	3	0	1	433	1	433	0.0	893
MsaG040441	MtrunA17_Chr1g0194351	69.340	424	102	4	1	412	1	408	0.0	583

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG040441	AT2G47210.3	69.841	441	120	6	2	433	5	441	607
MsaG040441	AT2G47210.1	69.841	441	120	6	2	433	5	441	607
MsaG040441	AT2G47210.2	69.841	441	120	6	2	433	5	441	607

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Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTGTTTCAGGCGAA+AGG	0.502998	7:-100219534	MsaT040441.1:intron
AAAGCCTCCTACTCACGAAA+AGG	0.530448	7:-100223501	MsaT040441.1:intron
AACTGTTGTTTCAGGCGAAA+GGG	0.463388	7:-100219533	MsaT040441.1:intron
AAGAATAGCCGAGTTACGGA+TGG	0.620429	7:-100221797	MsaT040441.1:CDS
AAGGAGATACAGTTTCACCA+GGG	0.739390	7:+100221022	None:intergenic
AATTATTTGATTTGTGTGAG+AGG	0.630139	7:-100222517	MsaT040441.1:CDS
AATTGAGAAGCATCAATTGA+TGG	0.396902	7:+100223530	None:intergenic
ACAAGAAATGGAGCGAAAAC+GGG	0.436669	7:-100221993	MsaT040441.1:CDS
ACAAGAGAAAAGAGATGAAG+AGG	0.510309	7:-100221939	MsaT040441.1:intron
ACCTAGAAAACAAAAGGCCT+CGG	0.494235	7:-100219329	MsaT040441.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	100219321	100223799	100219321	ID=MsaG040441
Chr7	mRNA	100219321	100223799	100219321	ID=MsaT040441.1;Parent=MsaG040441
Chr7	exon	100219321	100219386	100219321	ID=MsaT040441.1.exon16;Parent=MsaT040441.1
Chr7	CDS	100219321	100219386	100219321	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100219507	100219541	100219507	ID=MsaT040441.1.exon15;Parent=MsaT040441.1
Chr7	CDS	100219507	100219541	100219507	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100219646	100219682	100219646	ID=MsaT040441.1.exon14;Parent=MsaT040441.1
Chr7	CDS	100219646	100219682	100219646	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100219786	100219857	100219786	ID=MsaT040441.1.exon13;Parent=MsaT040441.1
Chr7	CDS	100219786	100219857	100219786	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100220083	100220178	100220083	ID=MsaT040441.1.exon12;Parent=MsaT040441.1
Chr7	CDS	100220083	100220178	100220083	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100220410	100220520	100220410	ID=MsaT040441.1.exon11;Parent=MsaT040441.1
Chr7	CDS	100220410	100220520	100220410	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100220951	100221109	100220951	ID=MsaT040441.1.exon10;Parent=MsaT040441.1
Chr7	CDS	100220951	100221109	100220951	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100221789	100221836	100221789	ID=MsaT040441.1.exon9;Parent=MsaT040441.1
Chr7	CDS	100221789	100221836	100221789	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100221940	100222032	100221940	ID=MsaT040441.1.exon8;Parent=MsaT040441.1
Chr7	CDS	100221940	100222032	100221940	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100222183	100222250	100222183	ID=MsaT040441.1.exon7;Parent=MsaT040441.1
Chr7	CDS	100222183	100222250	100222183	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100222435	100222564	100222435	ID=MsaT040441.1.exon6;Parent=MsaT040441.1
Chr7	CDS	100222435	100222564	100222435	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100222986	100223042	100222986	ID=MsaT040441.1.exon5;Parent=MsaT040441.1
Chr7	CDS	100222986	100223042	100222986	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100223136	100223195	100223136	ID=MsaT040441.1.exon4;Parent=MsaT040441.1
Chr7	CDS	100223136	100223195	100223136	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100223280	100223345	100223280	ID=MsaT040441.1.exon3;Parent=MsaT040441.1
Chr7	CDS	100223280	100223345	100223280	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100223502	100223588	100223502	ID=MsaT040441.1.exon2;Parent=MsaT040441.1
Chr7	CDS	100223502	100223588	100223502	ID=cds.MsaT040441.1;Parent=MsaT040441.1
Chr7	exon	100223683	100223799	100223683	ID=MsaT040441.1.exon1;Parent=MsaT040441.1
Chr7	CDS	100223683	100223799	100223683	ID=cds.MsaT040441.1;Parent=MsaT040441.1

Gene Sequence

>MsaT040441.1

ATGGACGCGAAGGATATTCTTGGTTTGCACAAAAACTCATTTCCATCTTCTCTTGATAATAAAAAATCTCGACCTCCCAAAGAATCTCAGAGAAAACCTGATGGCATTTCACGCGAGGTTTATGCACTTACTGGTGGAATGCCACCTCTTATGCCATCAATTGATGCTTCTCAATTGAAGAAAAAGCCTCCTACTCACGAAAAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTACCATTGGGTTCGAGTAGTCAATGGTGTTCTACCTACTGGAGACTATTCTTTTGCCAAGTACAACAAGTCTGTTGACATCATCAAATACACAGACGAGGAATACGAAAAGTATTTGACAGATCCTATGTGGACCAAGGAGGAGACAAATGAATTATTTGATTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTTATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGTGTTGCGGGCTATATTACTTGCCAGGGCTGCATCTTCCGGGGACATTGCAACACATCCTATCATTAAGGAACCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCCCAAACAAGACAACAAGAGAAAAGAGATGAAGAGGTTCTTATTGAAGCAAAAAGAATAGCCGAGTTACGGATGGCTTCTAAGGTTACTGAACAGTCTCAATTGGCTGTTGCTTCAAATGCTGATGCAGAAGTTGCAGAGAGGGCTGTCCCTGGTGAAACTGTATCTCCTTCGAATGTGCAACTTCCACAAATGGTTGTGCCTTCTGCAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGGACATATGCACTCGAGCAAATGGTGCAAGCTTCAAACTCAACTGCTGGAGTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTCGGGGTAAATTTGAAACCGAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACATGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCCGAAGGTTCATCTTTCCGTGATGGATCCTACGGTGAAACACCAGGCACACCAAAGGATCGTACATTTATTCCCGATTCGTTGAATTTTGGAGGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGGGCATGGAGCTCCACCTACAGCAGCTCATAAAAGACCTAGAAAACAAAAGGCCTCGGATCTTTAA

Protein sequence

>MsaT040441.1

MDAKDILGLHKNSFPSSLDNKKSRPPKESQRKPDGISREVYALTGGMPPLMPSIDASQLKKKPPTHEKVTWQWLPFTNSARKDDLHLYHWVRVVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLTDPMWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVLRAILLARAASSGDIATHPIIKEPYNVSQEMERKRALSMVLSQTRQQEKRDEEVLIEAKRIAELRMASKVTEQSQLAVASNADAEVAERAVPGETVSPSNVQLPQMVVPSADNASTLASLRMLRVYLRTYALEQMVQASNSTAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFIPDSLNFGGERVGKKDQKRKGHGAPPTAAHKRPRKQKASDL*