Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040479 | XP_003627885.2 | 85.606 | 132 | 13 | 1 | 23 | 148 | 204 | 335 | 2.35e-62 | 217 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040479 | sp|Q9FKH6|B561P_ARATH | 55.725 | 131 | 33 | 2 | 330 | 437 | 209 | 337 | 1.05e-37 | 145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040479 | tr|G7LGS1|G7LGS1_MEDTR | 85.606 | 132 | 13 | 1 | 23 | 148 | 204 | 335 | 1.12e-62 | 217 |
Gene ID | Type | Classification |
---|---|---|
MsaG040479 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040479 | MtrunA17_Chr8g0353271 | 85.606 | 132 | 13 | 1 | 23 | 148 | 204 | 335 | 2.16e-66 | 217 |
MsaG040479 | MtrunA17_Chr2g0290131 | 71.942 | 139 | 16 | 1 | 330 | 445 | 211 | 349 | 1.12e-54 | 188 |
MsaG040479 | MtrunA17_Chr2g0328391 | 92.000 | 100 | 8 | 0 | 149 | 248 | 254 | 353 | 1.50e-53 | 191 |
MsaG040479 | MtrunA17_Chr2g0278181 | 45.771 | 201 | 77 | 3 | 277 | 445 | 57 | 257 | 1.03e-47 | 167 |
MsaG040479 | MtrunA17_Chr4g0076051 | 59.712 | 139 | 33 | 1 | 330 | 445 | 208 | 346 | 1.05e-46 | 167 |
MsaG040479 | MtrunA17_Chr7g0234191 | 50.388 | 129 | 41 | 2 | 332 | 437 | 258 | 386 | 4.44e-36 | 139 |
MsaG040479 | MtrunA17_Chr4g0031711 | 53.465 | 101 | 42 | 2 | 151 | 248 | 317 | 415 | 9.34e-28 | 117 |
MsaG040479 | MtrunA17_Chr5g0447771 | 43.511 | 131 | 51 | 2 | 332 | 439 | 254 | 384 | 2.43e-26 | 111 |
MsaG040479 | MtrunA17_Chr4g0031721 | 57.895 | 95 | 38 | 1 | 156 | 248 | 276 | 370 | 6.21e-26 | 111 |
MsaG040479 | MtrunA17_Chr7g0238891 | 67.123 | 73 | 24 | 0 | 176 | 248 | 354 | 426 | 3.53e-25 | 109 |
MsaG040479 | MtrunA17_Chr4g0031701 | 60.256 | 78 | 31 | 0 | 168 | 245 | 228 | 305 | 8.02e-24 | 105 |
MsaG040479 | MtrunA17_Chr2g0328381 | 44.800 | 125 | 55 | 2 | 165 | 287 | 246 | 358 | 6.37e-23 | 102 |
MsaG040479 | MtrunA17_Chr3g0101961 | 39.535 | 129 | 54 | 3 | 332 | 436 | 210 | 338 | 8.15e-23 | 100 |
MsaG040479 | MtrunA17_Chr4g0031731 | 47.664 | 107 | 47 | 1 | 168 | 274 | 228 | 325 | 1.44e-22 | 101 |
MsaG040479 | MtrunA17_Chr2g0328361 | 59.420 | 69 | 28 | 0 | 180 | 248 | 260 | 328 | 7.80e-21 | 95.9 |
MsaG040479 | MtrunA17_Chr2g0328341 | 45.872 | 109 | 42 | 3 | 184 | 287 | 259 | 355 | 7.16e-20 | 92.8 |
MsaG040479 | MtrunA17_Chr5g0444651 | 34.058 | 138 | 67 | 3 | 332 | 445 | 228 | 365 | 3.23e-19 | 89.7 |
MsaG040479 | MtrunA17_Chr8g0347591 | 34.868 | 152 | 74 | 3 | 305 | 434 | 198 | 346 | 6.29e-19 | 88.6 |
MsaG040479 | MtrunA17_Chr7g0241561 | 73.333 | 60 | 9 | 1 | 244 | 296 | 79 | 138 | 1.14e-18 | 89.4 |
MsaG040479 | MtrunA17_Chr2g0328401 | 50.617 | 81 | 38 | 1 | 174 | 252 | 268 | 348 | 1.16e-16 | 82.8 |
MsaG040479 | MtrunA17_Chr4g0031741 | 64.286 | 56 | 20 | 0 | 188 | 243 | 278 | 333 | 6.42e-16 | 80.5 |
MsaG040479 | MtrunA17_Chr2g0328431 | 34.868 | 152 | 79 | 5 | 111 | 245 | 192 | 340 | 2.67e-15 | 78.6 |
MsaG040479 | MtrunA17_Chr2g0328411 | 47.312 | 93 | 38 | 4 | 174 | 255 | 262 | 354 | 7.28e-15 | 77.4 |
MsaG040479 | MtrunA17_Chr7g0275621 | 32.743 | 113 | 51 | 3 | 345 | 435 | 238 | 347 | 1.90e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040479 | AT5G35735.1 | 55.725 | 131 | 33 | 2 | 330 | 437 | 209 | 337 | 1.06e-38 | 145 |
MsaG040479 | AT3G25290.1 | 46.753 | 154 | 51 | 5 | 316 | 445 | 208 | 354 | 4.40e-36 | 138 |
MsaG040479 | AT3G25290.2 | 46.753 | 154 | 51 | 5 | 316 | 445 | 208 | 354 | 4.40e-36 | 138 |
MsaG040479 | AT4G12980.1 | 49.612 | 129 | 42 | 2 | 332 | 437 | 221 | 349 | 9.79e-36 | 137 |
MsaG040479 | AT4G17280.1 | 45.333 | 150 | 57 | 2 | 332 | 458 | 219 | 366 | 1.02e-34 | 134 |
MsaG040479 | AT5G47530.1 | 48.062 | 129 | 44 | 1 | 332 | 437 | 211 | 339 | 1.02e-33 | 132 |
MsaG040479 | AT1G07530.1 | 43.220 | 118 | 59 | 2 | 132 | 248 | 340 | 450 | 2.00e-22 | 101 |
MsaG040479 | AT2G04850.1 | 36.458 | 192 | 91 | 6 | 277 | 437 | 156 | 347 | 5.30e-22 | 98.6 |
MsaG040479 | AT1G07520.2 | 50.505 | 99 | 38 | 2 | 176 | 274 | 139 | 226 | 1.83e-19 | 91.7 |
MsaG040479 | AT1G07520.4 | 50.505 | 99 | 38 | 2 | 176 | 274 | 139 | 226 | 1.83e-19 | 91.7 |
MsaG040479 | AT1G07520.1 | 50.505 | 99 | 38 | 2 | 176 | 274 | 303 | 390 | 2.29e-19 | 92.0 |
MsaG040479 | AT1G07520.3 | 50.505 | 99 | 38 | 2 | 176 | 274 | 304 | 391 | 2.29e-19 | 92.0 |
MsaG040479 | AT3G59070.1 | 38.931 | 131 | 57 | 2 | 330 | 437 | 218 | 348 | 2.50e-19 | 90.9 |
MsaG040479 | AT2G37650.1 | 62.687 | 67 | 25 | 0 | 182 | 248 | 335 | 401 | 3.87e-19 | 91.3 |
MsaG040479 | AT2G37650.2 | 62.687 | 67 | 25 | 0 | 182 | 248 | 323 | 389 | 4.24e-19 | 91.3 |
MsaG040479 | AT1G08315.1 | 49.074 | 108 | 46 | 2 | 23 | 121 | 204 | 311 | 1.12e-18 | 87.4 |
MsaG040479 | AT2G29060.2 | 53.333 | 75 | 35 | 0 | 174 | 248 | 264 | 338 | 1.80e-18 | 89.0 |
MsaG040479 | AT2G29060.1 | 53.333 | 75 | 35 | 0 | 174 | 248 | 301 | 375 | 1.98e-18 | 89.0 |
MsaG040479 | AT3G07570.1 | 36.719 | 128 | 55 | 3 | 330 | 434 | 211 | 335 | 2.03e-17 | 84.3 |
MsaG040479 | AT3G46600.3 | 36.090 | 133 | 81 | 3 | 134 | 265 | 123 | 252 | 2.21e-15 | 79.3 |
MsaG040479 | AT3G46600.1 | 38.596 | 114 | 66 | 3 | 153 | 265 | 174 | 284 | 3.06e-15 | 79.0 |
MsaG040479 | AT2G29065.1 | 62.712 | 59 | 22 | 0 | 188 | 246 | 246 | 304 | 9.72e-15 | 77.4 |
MsaG040479 | AT3G61750.2 | 34.146 | 123 | 56 | 3 | 332 | 432 | 143 | 262 | 1.37e-14 | 75.1 |
MsaG040479 | AT5G59450.1 | 40.000 | 105 | 55 | 2 | 141 | 245 | 182 | 278 | 1.43e-14 | 76.6 |
MsaG040479 | AT3G61750.1 | 34.146 | 123 | 56 | 3 | 332 | 432 | 220 | 339 | 1.67e-14 | 75.9 |
MsaG040479 | AT3G46600.2 | 44.737 | 76 | 41 | 1 | 191 | 265 | 1 | 76 | 7.91e-12 | 67.4 |
Find 139 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAACCTGAGTTTGTTTA+TGG | 0.100230 | 7:+100618883 | MsaT040479.1:CDS |
TCTGGTGGCCTTGGATGAAC+TGG | 0.240207 | 7:+100613430 | MsaT040479.1:CDS |
GATGAGTGTCGAAAGGTTTC+TGG | 0.253174 | 7:+100613412 | None:intergenic |
AGCATCGTCAACATCTTTAA+AGG | 0.254895 | 7:+100617958 | MsaT040479.1:CDS |
GAGGCGTTTAAGAATGTTTC+TGG | 0.264257 | 7:+100614442 | MsaT040479.1:CDS |
CTTTAAAGGGTTTGAGGCCT+TGG | 0.269499 | 7:+100617972 | MsaT040479.1:CDS |
CGCTATGAGCCTACGATAAC+TGG | 0.275781 | 7:+100618012 | MsaT040479.1:CDS |
CAGTGACTTCTATCAAAATT+AGG | 0.302668 | 7:+100616317 | MsaT040479.1:CDS |
AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 7:+100615957 | MsaT040479.1:CDS |
CTACTGGAGCCTTTACCATT+GGG | 0.339331 | 7:+100617909 | MsaT040479.1:CDS |
ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 7:+100614622 | MsaT040479.1:CDS |
GCATCTCTGATATAGGTTGC+TGG | 0.350294 | 7:+100614403 | MsaT040479.1:intron |
GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 7:+100616136 | MsaT040479.1:intron |
TACCATCACTGTAGTTTGAT+TGG | 0.359165 | 7:-100616846 | None:intergenic |
ATGAATTGTTGAAGCAGATT+AGG | 0.368680 | 7:+100615937 | MsaT040479.1:CDS |
CTTGGATGAACTGGGATTAT+CGG | 0.369631 | 7:+100613439 | MsaT040479.1:CDS |
CGAAAGGTTTCTGGTGGCCT+TGG | 0.381864 | 7:+100613421 | MsaT040479.1:CDS |
TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 7:+100615869 | MsaT040479.1:CDS |
TTTAAGAATGTTTCTGGTGT+TGG | 0.404185 | 7:+100614448 | MsaT040479.1:CDS |
CACGGTGATGTTTGTAATCA+TGG | 0.407379 | 7:+100614709 | MsaT040479.1:CDS |
GCATCGTCAACATCTTTAAA+GGG | 0.410141 | 7:+100617959 | MsaT040479.1:CDS |
CGCGTTGGCGTTTGGTGCCA+TGG | 0.410736 | 7:+100614594 | MsaT040479.1:CDS |
CACTGGCATTATTGCAGCAC+TGG | 0.411869 | 7:+100618046 | MsaT040479.1:CDS |
AAGTCACAAGTAACAACAAT+AGG | 0.418738 | 7:+100616954 | MsaT040479.1:CDS |
ACCTTTCAGCACTACAACTA+AGG | 0.420817 | 7:-100616357 | None:intergenic |
CAACATCTTTAAAGGGTTTG+AGG | 0.424624 | 7:+100617966 | MsaT040479.1:CDS |
TCAAATATGCAGACCTTGCT+TGG | 0.433909 | 7:+100617285 | MsaT040479.1:CDS |
TAAAGGGTTTGAGGCCTTGG+AGG | 0.436696 | 7:+100617975 | MsaT040479.1:CDS |
GTAAGAGACGCGTTGGCGTT+TGG | 0.441043 | 7:+100614586 | MsaT040479.1:CDS |
AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 7:+100615859 | MsaT040479.1:CDS |
TGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 7:+100614456 | MsaT040479.1:CDS |
TAAAGATAAAGGAAGTGTTA+AGG | 0.455209 | 7:+100614633 | MsaT040479.1:CDS |
TTGGATGAACTGGGATTATC+GGG | 0.455960 | 7:+100613440 | MsaT040479.1:CDS |
CTGGTGGCCTTGGATGAACT+GGG | 0.456748 | 7:+100613431 | MsaT040479.1:CDS |
ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 7:+100615804 | MsaT040479.1:CDS |
TGGCAGCGTTGGTAATCATT+CGG | 0.469940 | 7:+100616291 | MsaT040479.1:intron |
ATCACAAAATCAGATTCTAC+TGG | 0.475994 | 7:+100617893 | MsaT040479.1:CDS |
TTGCTGGATGGGAAGTGACT+TGG | 0.476218 | 7:+100617353 | MsaT040479.1:intron |
TCTACTGGAGCCTTTACCAT+TGG | 0.481857 | 7:+100617908 | MsaT040479.1:CDS |
GGGATCATCCTCTTCTACCT+TGG | 0.484591 | 7:+100617408 | MsaT040479.1:CDS |
CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 7:+100615841 | MsaT040479.1:CDS |
TGCTGAAAGGTATGTTAGCA+TGG | 0.491633 | 7:+100616369 | MsaT040479.1:CDS |
TTGGCGTTTGGTGCCATGGA+TGG | 0.501029 | 7:+100614598 | MsaT040479.1:CDS |
AAGTGTTAAGGAGCAGAGTA+AGG | 0.501873 | 7:+100614645 | MsaT040479.1:CDS |
GGGATTTGAATTGTCAGAGC+TGG | 0.502158 | 7:+100613460 | MsaT040479.1:CDS |
TTATTCCAGGTTTCATCCAC+GGG | 0.502504 | 7:+100618810 | MsaT040479.1:intron |
ACAATTCATTAGCAGTCCTA+TGG | 0.503197 | 7:-100615923 | None:intergenic |
AGCCTTTACCATTGGGGTGT+CGG | 0.506306 | 7:+100617916 | MsaT040479.1:CDS |
TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 7:+100614559 | MsaT040479.1:CDS |
ATCCGACACCCCAATGGTAA+AGG | 0.511380 | 7:-100617918 | None:intergenic |
TTCCTTGAGTCCCTCTTGTG+AGG | 0.511801 | 7:-100618859 | None:intergenic |
GAGTGCTGAATGCAGTGAGC+TGG | 0.512499 | 7:+100617213 | MsaT040479.1:CDS |
CTGGTTCGAGTACGAGGACG+AGG | 0.519631 | 7:+100614500 | MsaT040479.1:CDS |
CACGGGCTCTTGACAAGAAG+TGG | 0.524867 | 7:+100618827 | MsaT040479.1:CDS |
AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 7:+100615851 | MsaT040479.1:CDS |
GTCGTTGTGTGCTGAACAAA+AGG | 0.533497 | 7:+100615758 | MsaT040479.1:CDS |
AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 7:+100615977 | MsaT040479.1:CDS |
TGAATTGTCAGAGCTGGAGC+AGG | 0.536848 | 7:+100613466 | MsaT040479.1:CDS |
CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 7:-100615972 | None:intergenic |
CATGAGCCATAAACAAACTC+AGG | 0.540322 | 7:-100618889 | None:intergenic |
GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 7:+100616137 | MsaT040479.1:CDS |
GAAGCGCGCATGGTTGGTGC+TGG | 0.542207 | 7:+100616023 | MsaT040479.1:CDS |
TACTGGAGCCTTTACCATTG+GGG | 0.543171 | 7:+100617910 | MsaT040479.1:CDS |
AACATCAGCAATTCCATCCA+TGG | 0.543264 | 7:-100614611 | None:intergenic |
CTTATTCCAGGTTTCATCCA+CGG | 0.547800 | 7:+100618809 | MsaT040479.1:intron |
CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 7:-100615884 | None:intergenic |
CACTTCTTGTCAAGAGCCCG+TGG | 0.552358 | 7:-100618826 | None:intergenic |
CTTCTACCTTGGAACCCTTG+AGG | 0.554281 | 7:+100617419 | MsaT040479.1:CDS |
CAAGTAACAACAATAGGTTA+TGG | 0.554668 | 7:+100616960 | MsaT040479.1:CDS |
TGTGATTGCAAGGTACTTGA+AGG | 0.556632 | 7:+100617259 | MsaT040479.1:CDS |
GCGATTGAAGCGCGCATGGT+TGG | 0.557291 | 7:+100616017 | MsaT040479.1:CDS |
AAGGTATGTTAGCATGGGTT+CGG | 0.558557 | 7:+100616375 | MsaT040479.1:CDS |
TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 7:+100614552 | MsaT040479.1:CDS |
AGAAACCTTTCGACACTCAT+CGG | 0.560922 | 7:-100613410 | None:intergenic |
GTCATACCTCAAGGGTTCCA+AGG | 0.561638 | 7:-100617425 | None:intergenic |
CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 7:+100614544 | MsaT040479.1:CDS |
CTGTGTCTGCTAATGACCAT+AGG | 0.565936 | 7:+100615907 | MsaT040479.1:CDS |
AACTGGAAGCATGCATACAC+TGG | 0.567195 | 7:+100618029 | MsaT040479.1:CDS |
TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 7:+100614541 | MsaT040479.1:CDS |
AGCCTCACAAGAGGGACTCA+AGG | 0.568328 | 7:+100618857 | MsaT040479.1:CDS |
GATCTACTAGATCTTGCTAC+TGG | 0.569155 | 7:+100614481 | MsaT040479.1:CDS |
ATCCGCTGCAGACACCTCCA+AGG | 0.570140 | 7:-100617989 | None:intergenic |
TCCTTAGTTGTAGTGCTGAA+AGG | 0.570590 | 7:+100616356 | MsaT040479.1:CDS |
GACGAGGGAAAATGCAGTGT+CGG | 0.572198 | 7:+100614516 | MsaT040479.1:CDS |
AGTGCTGAATGCAGTGAGCT+GGG | 0.573759 | 7:+100617214 | MsaT040479.1:CDS |
GAGTTGATGAGAGTGATAGT+TGG | 0.574677 | 7:+100614673 | MsaT040479.1:CDS |
TGGATGGGAAGTGACTTGGC+TGG | 0.574950 | 7:+100617357 | MsaT040479.1:intron |
TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 7:-100615883 | None:intergenic |
TTGCTACTGGTTCGAGTACG+AGG | 0.579153 | 7:+100614494 | MsaT040479.1:CDS |
TATTCAACTCATAGAACACT+CGG | 0.580467 | 7:+100617387 | MsaT040479.1:CDS |
CGATAATCCCAGTTCATCCA+AGG | 0.585497 | 7:-100613438 | None:intergenic |
GGCCTTGGAGGTGTCTGCAG+CGG | 0.586267 | 7:+100617987 | MsaT040479.1:CDS |
ACCTTTCAGCATCATAGAGA+TGG | 0.588485 | 7:-100616177 | None:intergenic |
TGGAGATGTAAGAGACGCGT+TGG | 0.588827 | 7:+100614579 | MsaT040479.1:CDS |
CTTTGGGAGCTGTGATTGCA+AGG | 0.589874 | 7:+100617249 | MsaT040479.1:CDS |
CAAGGGTTCCAAGGTAGAAG+AGG | 0.589996 | 7:-100617416 | None:intergenic |
GTTGGTGATGTTCGTAGTCA+CGG | 0.590841 | 7:+100614691 | MsaT040479.1:CDS |
AGCCAATCAAACTACAGTGA+TGG | 0.593344 | 7:+100616844 | MsaT040479.1:CDS |
AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 7:+100616139 | MsaT040479.1:CDS |
ACATAAGGTAAAACCAAGCA+AGG | 0.602728 | 7:-100617298 | None:intergenic |
TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 7:+100615812 | MsaT040479.1:CDS |
AAATGCGATTGAAGCGCGCA+TGG | 0.606624 | 7:+100616013 | MsaT040479.1:CDS |
TTGTGTGCTGAACAAAAGGA+TGG | 0.608825 | 7:+100615762 | MsaT040479.1:CDS |
TGCTGAATGCAGTGAGCTGG+GGG | 0.610403 | 7:+100617216 | MsaT040479.1:CDS |
GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 7:+100614555 | MsaT040479.1:CDS |
GCTGAAAGGTATGTTAGCAT+GGG | 0.611485 | 7:+100616370 | MsaT040479.1:CDS |
GATATAGGTTGCTGGTTGTG+AGG | 0.616665 | 7:+100614411 | MsaT040479.1:intron |
TTCTGGTGTTGGAGTGCTGG+CGG | 0.616859 | 7:+100614459 | MsaT040479.1:CDS |
AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 7:+100615831 | MsaT040479.1:CDS |
CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 7:+100616138 | MsaT040479.1:CDS |
TTGTGTATCCGACACCCCAA+TGG | 0.627722 | 7:-100617924 | None:intergenic |
GTGCTGAATGCAGTGAGCTG+GGG | 0.632180 | 7:+100617215 | MsaT040479.1:CDS |
CATGTAATGTCATACCTCAA+GGG | 0.633570 | 7:-100617433 | None:intergenic |
CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 7:+100615807 | MsaT040479.1:CDS |
ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 7:+100615773 | MsaT040479.1:CDS |
GAGATCAAAGCCTCACAAGA+GGG | 0.639033 | 7:+100618849 | MsaT040479.1:CDS |
GGCATTATTGCAGCACTGGG+TGG | 0.639441 | 7:+100618050 | MsaT040479.1:CDS |
AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 7:+100615808 | MsaT040479.1:CDS |
GGAGATCAAAGCCTCACAAG+AGG | 0.641381 | 7:+100618848 | MsaT040479.1:CDS |
GAGTGTCGAAAGGTTTCTGG+TGG | 0.642393 | 7:+100613415 | MsaT040479.1:CDS |
GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 7:+100615842 | MsaT040479.1:CDS |
ATGAACCGATGAGTGTCGAA+AGG | 0.647445 | 7:+100613405 | None:intergenic |
ACTGGCATTATTGCAGCACT+GGG | 0.651049 | 7:+100618047 | MsaT040479.1:CDS |
TAGGTTATGGTCAACAGTGG+AGG | 0.657191 | 7:+100616973 | MsaT040479.1:CDS |
ACTAACAGGAACCAGCTGCA+AGG | 0.658651 | 7:+100616809 | MsaT040479.1:intron |
TGCATGCTTCCAGTTATCGT+AGG | 0.662429 | 7:-100618021 | None:intergenic |
TCCATCTCTATGATGCTGAA+AGG | 0.662432 | 7:+100616176 | MsaT040479.1:CDS |
ACTTCTATCAAAATTAGGAG+TGG | 0.664395 | 7:+100616322 | MsaT040479.1:CDS |
CTTGCAATCACAGCTCCCAA+AGG | 0.665524 | 7:-100617248 | None:intergenic |
TCTTTGATGAATGAAGATAG+TGG | 0.667178 | 7:+100614766 | MsaT040479.1:CDS |
TGGTTGTGAGGAAAGTGTTG+AGG | 0.674105 | 7:+100614423 | MsaT040479.1:CDS |
ATTCAACTCATAGAACACTC+GGG | 0.675546 | 7:+100617388 | MsaT040479.1:CDS |
TGGTTCGAGTACGAGGACGA+GGG | 0.676342 | 7:+100614501 | MsaT040479.1:CDS |
CAATAGGTTATGGTCAACAG+TGG | 0.685498 | 7:+100616970 | MsaT040479.1:CDS |
AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 7:+100615788 | MsaT040479.1:CDS |
TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 7:+100615770 | MsaT040479.1:CDS |
GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 7:+100615792 | MsaT040479.1:CDS |
CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 7:+100615835 | MsaT040479.1:CDS |
AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 7:+100615832 | MsaT040479.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 100613413 | 100618912 | 100613413 | ID=MsaG040479 |
Chr7 | mRNA | 100613413 | 100618912 | 100613413 | ID=MsaT040479.1;Parent=MsaG040479 |
Chr7 | exon | 100613413 | 100613487 | 100613413 | ID=MsaT040479.1.exon1;Parent=MsaT040479.1 |
Chr7 | CDS | 100613413 | 100613487 | 100613413 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100614418 | 100614787 | 100614418 | ID=MsaT040479.1.exon2;Parent=MsaT040479.1 |
Chr7 | CDS | 100614418 | 100614787 | 100614418 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100615751 | 100616044 | 100615751 | ID=MsaT040479.1.exon3;Parent=MsaT040479.1 |
Chr7 | CDS | 100615751 | 100616044 | 100615751 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100616137 | 100616197 | 100616137 | ID=MsaT040479.1.exon4;Parent=MsaT040479.1 |
Chr7 | CDS | 100616137 | 100616197 | 100616137 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100616297 | 100616396 | 100616297 | ID=MsaT040479.1.exon5;Parent=MsaT040479.1 |
Chr7 | CDS | 100616297 | 100616396 | 100616297 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100616817 | 100616865 | 100616817 | ID=MsaT040479.1.exon6;Parent=MsaT040479.1 |
Chr7 | CDS | 100616817 | 100616865 | 100616817 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100616954 | 100616994 | 100616954 | ID=MsaT040479.1.exon7;Parent=MsaT040479.1 |
Chr7 | CDS | 100616954 | 100616994 | 100616954 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100617206 | 100617318 | 100617206 | ID=MsaT040479.1.exon8;Parent=MsaT040479.1 |
Chr7 | CDS | 100617206 | 100617318 | 100617206 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100617368 | 100617440 | 100617368 | ID=MsaT040479.1.exon9;Parent=MsaT040479.1 |
Chr7 | CDS | 100617368 | 100617440 | 100617368 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100617862 | 100618079 | 100617862 | ID=MsaT040479.1.exon10;Parent=MsaT040479.1 |
Chr7 | CDS | 100617862 | 100618079 | 100617862 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Chr7 | exon | 100618819 | 100618912 | 100618819 | ID=MsaT040479.1.exon11;Parent=MsaT040479.1 |
Chr7 | CDS | 100618819 | 100618912 | 100618819 | ID=cds.MsaT040479.1;Parent=MsaT040479.1 |
Gene Sequence |
Protein sequence |