AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040480 MtrunA17_Chr7g0270871 86.139 404 22 6 1 401 1 373 0.0 661
MsaG040480 MtrunA17_Chr1g0193321 46.746 169 61 4 166 330 409 552 1.78e-33 132
MsaG040480 MtrunA17_Chr1g0182791 57.778 90 33 1 222 311 308 392 4.50e-26 110
MsaG040480 MtrunA17_Chr7g0271251 38.095 231 89 8 166 371 379 580 1.45e-25 108
MsaG040480 MtrunA17_Chr3g0095391 44.915 118 58 3 221 337 300 411 5.46e-23 100
MsaG040480 MtrunA17_Chr7g0262691 56.667 90 27 3 228 311 250 333 5.71e-22 97.4
MsaG040480 MtrunA17_Chr1g0153241 56.098 82 34 2 212 293 68 147 4.77e-20 89.4
MsaG040480 MtrunA17_Chr5g0402031 56.716 67 29 0 240 306 114 180 9.59e-19 86.7
MsaG040480 MtrunA17_Chr4g0074161 55.357 56 25 0 242 297 217 272 1.26e-15 78.2
MsaG040480 MtrunA17_Chr7g0231461 58.065 62 25 1 232 293 299 359 1.95e-15 77.8
MsaG040480 MtrunA17_Chr1g0190731 51.786 56 27 0 242 297 204 259 7.32e-15 75.5
MsaG040480 MtrunA17_Chr3g0134741 36.735 98 53 2 228 323 224 314 6.15e-13 69.3
MsaG040480 MtrunA17_Chr1g0152131 46.970 66 34 1 242 306 271 336 1.52e-12 68.9
MsaG040480 MtrunA17_Chr1g0207301 35.065 77 43 1 247 323 304 373 6.40e-12 66.6
MsaG040480 MtrunA17_Chr8g0339091 28.421 190 122 5 119 295 168 356 9.02e-12 66.6
MsaG040480 MtrunA17_Chr3g0144641 36.111 108 60 3 242 340 202 309 1.64e-11 65.5
MsaG040480 MtrunA17_Chr5g0421111 35.652 115 59 3 242 341 376 490 2.34e-11 65.5
MsaG040480 MtrunA17_Chr4g0054581 45.588 68 37 0 226 293 183 250 2.84e-11 64.7
MsaG040480 MtrunA17_Chr4g0035101 45.161 62 33 1 242 302 154 215 5.04e-11 63.5
MsaG040480 MtrunA17_Chr5g0393721 33.333 81 47 1 242 322 235 308 7.39e-11 63.2
MsaG040480 MtrunA17_Chr1g0174161 38.961 77 45 2 231 306 161 236 8.15e-11 62.8
MsaG040480 MtrunA17_Chr4g0002781 47.297 74 39 0 214 287 147 220 8.22e-11 63.2
MsaG040480 MtrunA17_Chr8g0346151 44.643 56 31 0 242 297 280 335 9.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040480 AT1G09530.3 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT1G09530.2 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT1G09530.5 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT1G09530.1 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT1G09530.4 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT1G09530.6 38.750 240 110 9 71 302 198 408 2.54e-30 122
MsaG040480 AT2G46970.2 41.317 167 85 5 212 377 179 333 3.11e-28 114
MsaG040480 AT2G46970.3 41.317 167 85 5 212 377 188 342 4.39e-28 114
MsaG040480 AT2G46970.1 41.317 167 85 5 212 377 210 364 4.94e-28 114
MsaG040480 AT2G20180.7 40.719 167 82 4 214 375 190 344 3.06e-27 112
MsaG040480 AT2G20180.1 40.719 167 82 4 214 375 190 344 3.06e-27 112
MsaG040480 AT2G20180.5 40.719 167 82 4 214 375 190 344 3.06e-27 112
MsaG040480 AT2G20180.4 40.361 166 84 3 214 375 261 415 1.45e-26 111
MsaG040480 AT2G20180.6 40.361 166 84 3 214 375 261 415 1.45e-26 111
MsaG040480 AT2G20180.2 40.361 166 84 3 214 375 261 415 1.45e-26 111
MsaG040480 AT2G20180.3 40.361 166 84 3 214 375 261 415 1.45e-26 111
MsaG040480 AT4G28800.1 42.975 121 59 4 229 345 247 361 3.11e-22 98.6
MsaG040480 AT2G20180.8 54.430 79 36 0 214 292 261 339 7.48e-22 96.3
MsaG040480 AT5G67110.1 45.045 111 57 3 222 329 79 188 2.70e-21 91.7
MsaG040480 AT3G59060.1 36.979 192 106 7 216 396 236 423 1.89e-20 93.2
MsaG040480 AT4G28790.1 40.441 136 67 4 214 345 255 380 2.73e-20 92.4
MsaG040480 AT3G59060.3 39.157 166 91 5 216 372 236 400 4.16e-20 92.0
MsaG040480 AT3G59060.2 39.157 166 91 5 216 372 236 400 4.16e-20 92.0
MsaG040480 AT3G59060.4 39.157 166 91 5 216 372 236 400 4.16e-20 92.0
MsaG040480 AT4G36930.1 57.746 71 25 1 237 302 197 267 2.43e-19 89.4
MsaG040480 AT4G28800.2 41.880 117 60 3 229 345 259 367 6.46e-19 88.6
MsaG040480 AT2G43010.2 68.333 60 19 0 234 293 254 313 1.79e-17 84.3
MsaG040480 AT2G43010.1 68.333 60 19 0 234 293 254 313 1.87e-17 84.3
MsaG040480 AT4G28815.2 42.857 91 35 2 229 319 66 139 2.09e-17 81.3
MsaG040480 AT2G43010.3 68.333 60 19 0 234 293 261 320 2.11e-17 84.0
MsaG040480 AT2G43010.4 68.333 60 19 0 234 293 254 313 2.18e-17 84.0
MsaG040480 AT3G62090.2 36.842 171 99 6 225 393 176 339 3.45e-17 82.8
MsaG040480 AT3G62090.1 38.562 153 84 6 225 375 159 303 3.55e-17 82.4
MsaG040480 AT2G43010.5 68.333 60 19 0 234 293 296 355 4.09e-17 83.2
MsaG040480 AT4G00050.2 43.590 117 63 2 180 294 53 168 4.63e-17 81.6
MsaG040480 AT4G28815.1 42.857 91 35 2 229 319 142 215 7.22e-17 81.3
MsaG040480 AT2G24260.2 57.143 56 24 0 242 297 46 101 7.78e-17 80.1
MsaG040480 AT4G00050.1 43.590 117 63 2 180 294 155 270 1.16e-16 81.6
MsaG040480 AT4G00050.3 43.590 117 63 2 180 294 155 270 1.51e-16 81.3
MsaG040480 AT2G24260.1 57.143 56 24 0 242 297 149 204 3.35e-16 79.7
MsaG040480 AT4G30980.1 55.357 56 25 0 242 297 141 196 8.72e-16 78.2
MsaG040480 AT4G28790.2 50.000 78 38 1 214 291 255 331 1.06e-15 78.2
MsaG040480 AT4G30980.2 55.357 56 25 0 242 297 189 244 1.73e-15 77.8
MsaG040480 AT5G58010.1 43.373 83 41 2 216 297 88 165 2.34e-15 76.6
MsaG040480 AT4G28811.1 47.778 90 42 2 209 294 326 414 5.17e-13 70.9
MsaG040480 AT5G61270.2 42.697 89 51 0 207 295 48 136 1.74e-12 67.8
MsaG040480 AT5G61270.3 42.697 89 51 0 207 295 48 136 1.74e-12 67.8
MsaG040480 AT1G10120.2 42.553 94 49 4 211 302 188 278 1.94e-12 68.6
MsaG040480 AT1G10120.1 42.553 94 49 4 211 302 188 278 1.94e-12 68.6
MsaG040480 AT5G61270.1 42.697 89 51 0 207 295 136 224 2.72e-12 68.2
MsaG040480 AT5G50915.3 39.326 89 52 2 217 303 121 209 3.80e-12 66.6
MsaG040480 AT5G50915.4 39.326 89 52 2 217 303 121 209 3.80e-12 66.6
MsaG040480 AT5G50915.1 39.326 89 52 2 217 303 121 209 5.16e-12 66.6
MsaG040480 AT5G50915.2 39.326 89 52 2 217 303 121 209 5.16e-12 66.6
MsaG040480 AT2G14760.1 31.667 120 66 4 209 324 218 325 9.19e-12 66.2
MsaG040480 AT1G02340.1 56.863 51 21 1 245 294 141 191 2.41e-11 64.7
MsaG040480 AT1G02340.2 56.863 51 21 1 245 294 134 184 2.70e-11 64.3
MsaG040480 AT5G43175.1 35.366 82 46 1 242 323 143 217 3.13e-11 63.2
MsaG040480 AT2G14760.3 33.333 87 49 2 240 324 259 338 3.73e-11 64.3
MsaG040480 AT4G36540.1 35.227 88 55 2 216 302 127 213 4.25e-11 63.9
MsaG040480 AT4G36540.2 35.227 88 55 2 216 302 127 213 4.39e-11 63.9
MsaG040480 AT1G26260.5 42.424 66 37 1 242 306 212 277 5.03e-11 64.3
MsaG040480 AT1G26260.3 42.424 66 37 1 242 306 183 248 5.86e-11 63.9
MsaG040480 AT1G26260.4 42.424 66 37 1 242 306 234 299 5.93e-11 64.3
MsaG040480 AT1G26260.1 42.424 66 37 1 242 306 234 299 5.93e-11 64.3
MsaG040480 AT1G26260.6 42.424 66 37 1 242 306 234 299 5.93e-11 64.3
MsaG040480 AT1G26260.2 42.424 66 37 1 242 306 234 299 5.93e-11 64.3

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACATTTGATGGGTTTC+AGG 0.156734 7:+100630153 MsaT040480.1:CDS
TTTCTCTTTCCTCTAATTCT+AGG 0.178319 7:-100629159 None:intergenic
GACCCTCAAGCTTCAGTTAC+AGG 0.189644 7:+100629930 MsaT040480.1:CDS
TCACATACCTTATTGCAATT+TGG 0.224679 7:-100629750 None:intergenic
TTGACATGTGTGGTGGTAAT+TGG 0.291651 7:-100630262 None:intergenic
ACACCAACACCAACCTCTTT+TGG 0.299511 7:+100630332 MsaT040480.1:CDS
CCTTTCATTCCTCCTATCAT+TGG 0.324461 7:+100630296 MsaT040480.1:CDS
GTTACATCATCACTTAAATA+TGG 0.340356 7:-100629297 None:intergenic
ATGTCCTTCCAGGTTGATTC+TGG 0.340577 7:-100630358 None:intergenic
GACTAGCCACATGTCCTTCC+AGG 0.347583 7:-100630368 None:intergenic
ACCAATGCACCTAGAATTAG+AGG 0.347789 7:+100629150 MsaT040480.1:CDS
CCATCACCCATTTGTGGAAT+AGG 0.357478 7:-100630191 None:intergenic
AACATCATAAAATGATTAAC+TGG 0.360190 7:-100630086 None:intergenic
TTCATATGCAGAGTTTGATT+TGG 0.364667 7:-100629070 None:intergenic
TGTGAGTACTATTCTTACTT+TGG 0.374808 7:-100628798 None:intergenic
TATTTAAGTGATGATGTAAC+TGG 0.377845 7:+100629300 MsaT040480.1:CDS
GTTTGGTTTGAATCCAATCT+TGG 0.379031 7:-100628850 None:intergenic
AACGACAGAGTTCAGATGTT+TGG 0.380475 7:+100630230 MsaT040480.1:CDS
TATGAATGCACAACATTTGA+TGG 0.383363 7:+100630145 MsaT040480.1:CDS
GTGAGTACTATTCTTACTTT+GGG 0.386165 7:-100628797 None:intergenic
ACAGTTTCCTATTCCACAAA+TGG 0.388703 7:+100630184 MsaT040480.1:CDS
TCCTCTAATTCTAGGTGCAT+TGG 0.390333 7:-100629151 None:intergenic
GCTCATACCAAATTGCAATA+AGG 0.391698 7:+100629743 MsaT040480.1:CDS
GACGTTGCAGATTATGTCAA+TGG 0.409902 7:+100630046 MsaT040480.1:intron
ACCAAAGTTTAGATCATTTG+AGG 0.426290 7:-100629241 None:intergenic
GTGAGTTTGTTGTTGCAGTT+TGG 0.430149 7:-100628867 None:intergenic
AATTCATAATTTATCTGAAA+GGG 0.436637 7:+100629570 MsaT040480.1:CDS
GCCTCAAATGATCTAAACTT+TGG 0.436672 7:+100629240 MsaT040480.1:CDS
TTGATTCTGGTTACCAAAAG+AGG 0.453744 7:-100630345 None:intergenic
ACTCTGTTTCCATTATGAGC+TGG 0.454011 7:-100629523 None:intergenic
CTCACAGAAACAGTACTTGA+TGG 0.454187 7:+100628885 MsaT040480.1:CDS
AAAGAAAAGCCAGCTCATAA+TGG 0.458159 7:+100629514 MsaT040480.1:CDS
AGGAGGAATGAAAGGTGCAT+TGG 0.466560 7:-100630288 None:intergenic
GGAGGAATGAAAGGTGCATT+GGG 0.473309 7:-100630287 None:intergenic
TACAAACGTAAAATAGCATA+TGG 0.474481 7:-100629334 None:intergenic
GTGGAAGAGTTTCCAATGAT+AGG 0.480699 7:-100630308 None:intergenic
TACCTGTAACTGAAGCTTGA+GGG 0.481997 7:-100629932 None:intergenic
GTGACACCATCACCCATTTG+TGG 0.484725 7:-100630197 None:intergenic
CAGTTTCCTATTCCACAAAT+GGG 0.491361 7:+100630185 MsaT040480.1:CDS
TAATTCTAGGTGCATTGGTA+TGG 0.508040 7:-100629146 None:intergenic
TGAAGAAACACAAGAAAATA+CGG 0.510993 7:+100629489 MsaT040480.1:CDS
TGGTGTTAGAAAATCATATG+AGG 0.518657 7:+100629260 MsaT040480.1:CDS
ATGACAAGAAGCAATGGCTT+AGG 0.523118 7:+100628748 MsaT040480.1:CDS
TCAAGTGAGCATACAGAAGA+TGG 0.531560 7:-100629216 None:intergenic
ACAGAGTCAAGAGAAGCTAC+AGG 0.536275 7:+100629539 MsaT040480.1:CDS
TCACAGAAACAGTACTTGAT+GGG 0.539019 7:+100628886 MsaT040480.1:CDS
ATGAATGCACAACATTTGAT+GGG 0.539585 7:+100630146 MsaT040480.1:CDS
AAATTCATAATTTATCTGAA+AGG 0.542829 7:+100629569 MsaT040480.1:CDS
ACGTTGCAGATTATGTCAAT+GGG 0.542904 7:+100630047 MsaT040480.1:intron
AGTACTATTCTTACTTTGGG+AGG 0.546973 7:-100628794 None:intergenic
GGAATAGGAAACTGTATTTG+TGG 0.547372 7:-100630176 None:intergenic
CATGTGTGGTGGTAATTGGT+TGG 0.548002 7:-100630258 None:intergenic
AGAGGTTGGTGTTGGTGTGG+TGG 0.551444 7:-100630327 None:intergenic
TTCATGTTCATATGATGTGC+GGG 0.552429 7:-100630110 None:intergenic
CCTATTCCACAAATGGGTGA+TGG 0.561913 7:+100630191 MsaT040480.1:CDS
TTCTGGTTACCAAAAGAGGT+TGG 0.567323 7:-100630341 None:intergenic
TCAGAATGTTCATCAACGGT+TGG 0.575923 7:-100629111 None:intergenic
AGCTTCAGAATGTTCATCAA+CGG 0.575933 7:-100629115 None:intergenic
TTTGGTAACCAGAATCAACC+TGG 0.577623 7:+100630350 MsaT040480.1:CDS
TTACCTGTAACTGAAGCTTG+AGG 0.590352 7:-100629933 None:intergenic
ACTTAAATATGGAGAGTCAT+CGG 0.599086 7:-100629286 None:intergenic
ATTCATGTTCATATGATGTG+CGG 0.605271 7:-100630111 None:intergenic
CCAATGATAGGAGGAATGAA+AGG 0.605339 7:-100630296 None:intergenic
AGGTGCATTGGTATGGCTAG+AGG 0.613493 7:-100629139 None:intergenic
GTTGATTTAAGAAACACTGC+AGG 0.614456 7:-100628958 None:intergenic
TCAGAGATGACAAGAAGCAA+TGG 0.621101 7:+100628742 MsaT040480.1:CDS
GGAATGAAAATCACTGTGAG+AGG 0.626133 7:-100628773 None:intergenic
GAAGAGTTTCCAATGATAGG+AGG 0.626184 7:-100630305 None:intergenic
TTACCAAAAGAGGTTGGTGT+TGG 0.647408 7:-100630335 None:intergenic
CACAGAAACAGTACTTGATG+GGG 0.651724 7:+100628887 MsaT040480.1:CDS
GTAACCAGAATCAACCTGGA+AGG 0.666181 7:+100630354 MsaT040480.1:CDS
AAAAGAGGTTGGTGTTGGTG+TGG 0.666327 7:-100630330 None:intergenic
AATCAACCTGGAAGGACATG+TGG 0.668906 7:+100630362 MsaT040480.1:CDS
TTGGGAATTGACATGTGTGG+TGG 0.729000 7:-100630269 None:intergenic
GCATTGGGAATTGACATGTG+TGG 0.733578 7:-100630272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 100628724 100630388 100628724 ID=MsaG040480
Chr7 mRNA 100628724 100630388 100628724 ID=MsaT040480.1;Parent=MsaG040480
Chr7 exon 100628724 100629356 100628724 ID=MsaT040480.1.exon1;Parent=MsaT040480.1
Chr7 CDS 100628724 100629356 100628724 ID=cds.MsaT040480.1;Parent=MsaT040480.1
Chr7 exon 100629484 100629591 100629484 ID=MsaT040480.1.exon2;Parent=MsaT040480.1
Chr7 CDS 100629484 100629591 100629484 ID=cds.MsaT040480.1;Parent=MsaT040480.1
Chr7 exon 100629699 100629764 100629699 ID=MsaT040480.1.exon3;Parent=MsaT040480.1
Chr7 CDS 100629699 100629764 100629699 ID=cds.MsaT040480.1;Parent=MsaT040480.1
Chr7 exon 100629886 100629951 100629886 ID=MsaT040480.1.exon4;Parent=MsaT040480.1
Chr7 CDS 100629886 100629951 100629886 ID=cds.MsaT040480.1;Parent=MsaT040480.1
Chr7 exon 100630056 100630388 100630056 ID=MsaT040480.1.exon5;Parent=MsaT040480.1
Chr7 CDS 100630056 100630388 100630056 ID=cds.MsaT040480.1;Parent=MsaT040480.1
Gene Sequence

>MsaT040480.1

ATGTTTGATTCTAGCAACTCAGAGATGACAAGAAGCAATGGCTTAGGTTCCTCTCACAGTGATTTTCATTCCTCCCAAAGTAAGAATAGTACTCACATGTTCACATATTTAACTCCTCTCAAAAAACCAAGATTGGATTCAAACCAAACTGCAACAACAAACTCACAGAAACAGTACTTGATGGGGTGTGAATATCAAAAAAATGGAAAAGTGAACTTCTCAAACTTTTCTATACCTGCAGTGTTTCTTAAATCAACTCATCAACAAAGAGTCCAAGAGAAAGAATCAAAAGAAGTTGCTTCTACAAAATTTCAACAACAAAAACACTTAACTTTAAATGCTGCTACCAAATCAAACTCTGCATATGAAAGAAGTAGAGAATTACTACCAACCGTTGATGAACATTCTGAAGCTGCCTCTAGCCATACCAATGCACCTAGAATTAGAGGAAAGAGAAAAGCTAGTGCTATTAACTTATGTAATGCACGAGAACCATCTTCTGTATGCTCACTTGAAGCCTCAAATGATCTAAACTTTGGTGTTAGAAAATCATATGAGGACACCGATGACTCTCCATATTTAAGTGATGATGTAACTGGAATTCAAGAAACCATATGCTATTTTACGTTTGTAAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAATTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGATGGACAAAGCTTCGATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCAACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG

Protein sequence

>MsaT040480.1

MFDSSNSEMTRSNGLGSSHSDFHSSQSKNSTHMFTYLTPLKKPRLDSNQTATTNSQKQYLMGCEYQKNGKVNFSNFSIPAVFLKSTHQQRVQEKESKEVASTKFQQQKHLTLNAATKSNSAYERSRELLPTVDEHSEAASSHTNAPRIRGKRKASAINLCNAREPSSVCSLEASNDLNFGVRKSYEDTDDSPYLSDDVTGIQETICYFTFVNDEETQENTVKEKPAHNGNRVKRSYRNAKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG*