Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040568 | XP_003626181.2 | 89.815 | 108 | 8 | 1 | 1 | 108 | 1 | 105 | 2.50e-45 | 187 |
MsaG040568 | XP_003626181.2 | 98.915 | 645 | 7 | 0 | 97 | 741 | 260 | 904 | 0.0 | 1277 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040568 | sp|Q9P1Y6|PHRF1_HUMAN | 30.864 | 162 | 98 | 6 | 237 | 396 | 81 | 230 | 6.13e-12 | 73.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040568 | tr|A0A396H911|A0A396H911_MEDTR | 89.815 | 108 | 8 | 1 | 1 | 108 | 1 | 105 | 1.19e-45 | 187 |
MsaG040568 | tr|A0A396H911|A0A396H911_MEDTR | 98.915 | 645 | 7 | 0 | 97 | 741 | 260 | 904 | 0.0 | 1277 |
Gene ID | Type | Classification |
---|---|---|
MsaG040568 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040568 | MtrunA17_Chr7g0271951 | 98.915 | 645 | 7 | 0 | 97 | 741 | 260 | 904 | 0.0 | 1277 |
MsaG040568 | MtrunA17_Chr7g0271951 | 89.815 | 108 | 8 | 1 | 1 | 108 | 1 | 105 | 2.30e-49 | 187 |
MsaG040568 | MtrunA17_Chr4g0061801 | 43.038 | 158 | 84 | 4 | 263 | 416 | 34 | 189 | 1.65e-34 | 139 |
MsaG040568 | MtrunA17_Chr4g0061801 | 42.424 | 99 | 55 | 1 | 631 | 729 | 513 | 609 | 1.06e-14 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG040568 | AT3G05670.3 | 48.021 | 581 | 241 | 17 | 178 | 741 | 346 | 882 | 1.08e-152 | 467 |
MsaG040568 | AT3G05670.1 | 48.021 | 581 | 241 | 17 | 178 | 741 | 346 | 882 | 1.08e-152 | 467 |
MsaG040568 | AT3G05670.2 | 48.021 | 581 | 241 | 17 | 178 | 741 | 346 | 882 | 1.08e-152 | 467 |
MsaG040568 | AT4G10930.2 | 31.138 | 167 | 85 | 8 | 256 | 396 | 24 | 186 | 3.21e-13 | 73.9 |
MsaG040568 | AT4G10930.1 | 31.138 | 167 | 85 | 8 | 256 | 396 | 24 | 186 | 3.30e-13 | 73.9 |
MsaG040568 | AT1G67180.5 | 28.402 | 169 | 99 | 9 | 248 | 401 | 203 | 364 | 4.01e-12 | 68.9 |
MsaG040568 | AT1G67180.7 | 28.402 | 169 | 99 | 9 | 248 | 401 | 203 | 364 | 4.01e-12 | 68.9 |
MsaG040568 | AT1G67180.2 | 28.402 | 169 | 99 | 9 | 248 | 401 | 285 | 446 | 7.67e-12 | 68.6 |
MsaG040568 | AT1G67180.1 | 28.402 | 169 | 99 | 9 | 248 | 401 | 285 | 446 | 7.67e-12 | 68.6 |
Find 196 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTATATGGCCTGGAATTT+TGG | 0.124200 | 7:-101637685 | MsaT040568.1:CDS |
CCTTGAATTGCTCATTCTTA+TGG | 0.185613 | 7:+101637758 | None:intergenic |
AGATGTGGTTAAAAGTATTT+TGG | 0.206841 | 7:-101637076 | MsaT040568.1:CDS |
TGAATAGCCCTGAAATTAAT+AGG | 0.209679 | 7:-101637896 | MsaT040568.1:CDS |
CTTGGTTCCCTATTAATTTC+AGG | 0.214253 | 7:+101637888 | None:intergenic |
CTTTCGTCTTCTCTTTCTCT+TGG | 0.260528 | 7:+101639201 | None:intergenic |
CTGCTATTTGTTCTGATGGC+TGG | 0.262892 | 7:+101639118 | None:intergenic |
CACACTTATTGTGTTGGTTT+GGG | 0.278946 | 7:-101638326 | MsaT040568.1:CDS |
GGGTCTCCATTCTGCATAAA+TGG | 0.287184 | 7:+101637786 | None:intergenic |
TTCAAGGGGCCCAGTGGTTC+AGG | 0.296545 | 7:-101637742 | MsaT040568.1:CDS |
ATTGTCTCAAGATGCTGATT+TGG | 0.302977 | 7:-101637505 | MsaT040568.1:CDS |
ACATCAACCTTATCAGATTA+TGG | 0.305141 | 7:-101637660 | MsaT040568.1:CDS |
CGATGAGGATTATGTGGTTT+CGG | 0.319604 | 7:-101639962 | MsaT040568.1:CDS |
CAACTCAAAGCCTGCCTTCC+CGG | 0.326688 | 7:-101638205 | MsaT040568.1:CDS |
ATCCTTGAAGATGCCAATTC+CGG | 0.338850 | 7:-101639064 | MsaT040568.1:CDS |
CTTCTAGCAGAGGTCGAAAA+AGG | 0.347985 | 7:-101639249 | MsaT040568.1:CDS |
GTGCAGGCTTACTGATTGTT+TGG | 0.350078 | 7:+101638627 | None:intergenic |
ACACACTTATTGTGTTGGTT+TGG | 0.353037 | 7:-101638327 | MsaT040568.1:CDS |
TTCAAATACCTGATCACGTT+CGG | 0.363155 | 7:+101638568 | None:intergenic |
GAGAAGTACCTGAAGGTAAT+TGG | 0.364011 | 7:-101638301 | MsaT040568.1:CDS |
CTTTCTGCTATTTGTTCTGA+TGG | 0.368521 | 7:+101639114 | None:intergenic |
CTCGCAATCTGAGCCGGAAT+TGG | 0.377934 | 7:+101639051 | None:intergenic |
TTGTCTCAAGATGCTGATTT+GGG | 0.385700 | 7:-101637504 | MsaT040568.1:intron |
GGCCTGTGAATGCAGCTATA+TGG | 0.385787 | 7:-101637698 | MsaT040568.1:CDS |
CAGGTGATGGCCGGGAAGGC+AGG | 0.388209 | 7:+101638195 | None:intergenic |
TTTCGTCTTCTCTTTCTCTT+GGG | 0.388977 | 7:+101639202 | None:intergenic |
CTGCTGCTGCATGGGTGGAT+TGG | 0.389809 | 7:+101637636 | None:intergenic |
TCTTCACAGTGGTTACGATT+AGG | 0.391290 | 7:-101637042 | MsaT040568.1:CDS |
AGGAAAATAAAAGAAGAGTA+AGG | 0.396826 | 7:-101638745 | MsaT040568.1:CDS |
GAGTCCACAAGCAGCGAGTA+TGG | 0.405089 | 7:+101637227 | None:intergenic |
TAAATCAGATTCTTGAGCTT+GGG | 0.405889 | 7:+101638235 | None:intergenic |
CTCCTGAGTTCTTCTTCAGT+TGG | 0.407979 | 7:+101638446 | None:intergenic |
GTTGATGTCCCCAAAATTCC+AGG | 0.409316 | 7:+101637675 | None:intergenic |
CCCCACATTGAATTAATTGC+TGG | 0.411682 | 7:-101637156 | MsaT040568.1:CDS |
TGCTATTTGTTCTGATGGCT+GGG | 0.413685 | 7:+101639119 | None:intergenic |
ACAAGTGCCCGAACGTGATC+AGG | 0.415339 | 7:-101638576 | MsaT040568.1:intron |
GAAGAGTGAGGTGGGAAAAC+AGG | 0.429247 | 7:-101638789 | MsaT040568.1:CDS |
GAAGGAGCTTCTCCGATGTC+TGG | 0.435810 | 7:-101638065 | MsaT040568.1:CDS |
TCTGCTGTTGTTGATCGTGC+AGG | 0.435897 | 7:+101638611 | None:intergenic |
GATAGAATGGCTTCTACAAC+TGG | 0.435937 | 7:-101637960 | MsaT040568.1:CDS |
GTGATTTGAGAAAGAGGGTT+AGG | 0.441305 | 7:-101640011 | MsaT040568.1:CDS |
TTGGTTCCCTATTAATTTCA+GGG | 0.441433 | 7:+101637889 | None:intergenic |
GCTACGTTCAATTGATAGAA+TGG | 0.442187 | 7:-101637973 | MsaT040568.1:CDS |
AGAGGAATCTCAAGGAAGAA+AGG | 0.442305 | 7:-101638834 | MsaT040568.1:CDS |
GGACAAATGAGTATGATTAA+AGG | 0.442629 | 7:-101637132 | MsaT040568.1:CDS |
TTTAAAGATGCCAAAGCAAC+TGG | 0.442699 | 7:+101638260 | None:intergenic |
GAACACATAACGGACTCATA+TGG | 0.444472 | 7:+101638413 | None:intergenic |
ATACTTTCTCGTATATGAAC+AGG | 0.444823 | 7:+101638176 | None:intergenic |
AGAAAGAGAAGACGAAAGAA+TGG | 0.448531 | 7:-101639196 | MsaT040568.1:CDS |
GTTTATAGAAGACGAGGATT+CGG | 0.452935 | 7:-101639857 | MsaT040568.1:CDS |
AGAAAGAGGGTTAGGTCAAA+GGG | 0.453596 | 7:-101640003 | MsaT040568.1:CDS |
GAATAGCCCTGAAATTAATA+GGG | 0.454184 | 7:-101637895 | MsaT040568.1:CDS |
GGCCATATAGCTGCATTCAC+AGG | 0.458181 | 7:+101637696 | None:intergenic |
GTTCTTATATGTTGAGAACT+TGG | 0.458529 | 7:+101637870 | None:intergenic |
ATCTCTCCATTTATGCAGAA+TGG | 0.461478 | 7:-101637792 | MsaT040568.1:CDS |
GCTTCTCCGATGTCTGGAGG+TGG | 0.461950 | 7:-101638059 | MsaT040568.1:CDS |
TTAAATCAGATTCTTGAGCT+TGG | 0.463615 | 7:+101638234 | None:intergenic |
CCTGCACACACTTATTGTGT+TGG | 0.464630 | 7:-101638332 | MsaT040568.1:CDS |
TCTTCTTCTTTGACAGTAGC+GGG | 0.465078 | 7:+101637585 | None:intergenic |
AATAGATCGAGGGCTAAAAC+TGG | 0.465701 | 7:-101639802 | MsaT040568.1:CDS |
TTCAGGTTATAGTACTTTCA+AGG | 0.466528 | 7:-101637274 | MsaT040568.1:intron |
TCAAATACCTGATCACGTTC+GGG | 0.467441 | 7:+101638569 | None:intergenic |
GAGGACTTGAAGAGTGAGGT+GGG | 0.468611 | 7:-101638797 | MsaT040568.1:CDS |
TGGACAATCAGACACATTCC+CGG | 0.469120 | 7:+101639933 | None:intergenic |
CACAGGCCCGTTCGAAAACA+TGG | 0.469763 | 7:+101637713 | None:intergenic |
TGTTTGATCTGCTGCTGCAT+GGG | 0.470031 | 7:+101637628 | None:intergenic |
ATGGTTGAATCCTGAACCAC+TGG | 0.473286 | 7:+101637732 | None:intergenic |
ATGTTTGATCTGCTGCTGCA+TGG | 0.473519 | 7:+101637627 | None:intergenic |
GCAAACGTGATTTGAGAAAG+AGG | 0.473708 | 7:-101640017 | MsaT040568.1:CDS |
CTTCTCCGATGTCTGGAGGT+GGG | 0.475968 | 7:-101638058 | MsaT040568.1:CDS |
GAGGTGAAGACATCAGGTTC+AGG | 0.479499 | 7:+101638150 | None:intergenic |
GGAATCTCTGCTTACACAAA+GGG | 0.482495 | 7:+101638648 | None:intergenic |
ATGTATGAGGTGAAGACATC+AGG | 0.483949 | 7:+101638144 | None:intergenic |
AGACATCGGAGAAGCTCCTT+CGG | 0.486565 | 7:+101638067 | None:intergenic |
GGAAAATAAAAGAAGAGTAA+GGG | 0.486715 | 7:-101638744 | MsaT040568.1:CDS |
ATGTGGTTTCGGATGATGCC+GGG | 0.487381 | 7:-101639951 | MsaT040568.1:CDS |
GAGAAAGAGGGTTAGGTCAA+AGG | 0.488109 | 7:-101640004 | MsaT040568.1:CDS |
TGGTTGTAGACCAGTTGCTT+TGG | 0.490683 | 7:-101638270 | MsaT040568.1:CDS |
TTTGTAGCTGCTGAACTTGA+CGG | 0.493087 | 7:+101638003 | None:intergenic |
TTCTCCGATGTCTGGAGGTG+GGG | 0.496212 | 7:-101638057 | MsaT040568.1:CDS |
GAAAGAGATCAGTCCTGAAA+AGG | 0.496295 | 7:-101639096 | MsaT040568.1:CDS |
GAAAATAAAAGAAGAGTAAG+GGG | 0.500118 | 7:-101638743 | MsaT040568.1:CDS |
CCATAAGAATGAGCAATTCA+AGG | 0.500298 | 7:-101637758 | MsaT040568.1:CDS |
GATTGGTCCATAATCTGATA+AGG | 0.500628 | 7:+101637653 | None:intergenic |
TCACAGTACCAATTACCTTC+AGG | 0.502598 | 7:+101638293 | None:intergenic |
AAAGGAGCGATTGCAGTCAA+TGG | 0.505261 | 7:-101637547 | MsaT040568.1:CDS |
ACAGATGGTAAAGGGAAGAA+AGG | 0.505504 | 7:-101640046 | None:intergenic |
AGAAGACGAGGATTCGGAAA+AGG | 0.505843 | 7:-101639851 | MsaT040568.1:CDS |
AGCCGGAATTGGCATCTTCA+AGG | 0.506290 | 7:+101639062 | None:intergenic |
TTGATCTGCTGCTGCATGGG+TGG | 0.507527 | 7:+101637631 | None:intergenic |
GTATATGAACAGGTGATGGC+CGG | 0.507755 | 7:+101638186 | None:intergenic |
TTGCTCATTCTTATGGAGAA+GGG | 0.514261 | 7:+101637765 | None:intergenic |
TATGTGGTTTCGGATGATGC+CGG | 0.515722 | 7:-101639952 | MsaT040568.1:CDS |
GTGAATGCAGCTATATGGCC+TGG | 0.517468 | 7:-101637693 | MsaT040568.1:CDS |
AGATAACTTGCACATTGTAA+AGG | 0.517805 | 7:-101637565 | MsaT040568.1:CDS |
GTGGTTACGATTAGGACTTT+AGG | 0.519386 | 7:-101637034 | None:intergenic |
GAGGAATCTCAAGGAAGAAA+GGG | 0.523223 | 7:-101638833 | MsaT040568.1:CDS |
GGAAAAGGAGGTGATTCAAC+GGG | 0.526113 | 7:-101639836 | MsaT040568.1:CDS |
ATCTCAAGGAAGAAAGGGTA+AGG | 0.528597 | 7:-101638828 | MsaT040568.1:CDS |
ATTGCTCATTCTTATGGAGA+AGG | 0.529056 | 7:+101637764 | None:intergenic |
CACCGTCTCTCTGATAAAGT+TGG | 0.530129 | 7:+101638032 | None:intergenic |
TCTTCGAATGGAAAATGAAG+TGG | 0.531620 | 7:-101638921 | MsaT040568.1:CDS |
TCAAACATTGTCACTGAGGT+TGG | 0.532392 | 7:-101637612 | MsaT040568.1:CDS |
AGAGGACTTGAAGAGTGAGG+TGG | 0.533578 | 7:-101638798 | MsaT040568.1:CDS |
GAGGAGAGCTTCTCTTCGAA+TGG | 0.534382 | 7:-101638933 | MsaT040568.1:CDS |
CACATTGAATTAATTGCTGG+TGG | 0.534434 | 7:-101637153 | MsaT040568.1:CDS |
TTTGGATGGATGTGCGGCTG+AGG | 0.536263 | 7:-101639893 | MsaT040568.1:CDS |
TAATTCAATGTGGGGACAGA+CGG | 0.539650 | 7:+101637164 | None:intergenic |
ATGGAAGCCTCCAGCACGGA+AGG | 0.541330 | 7:-101638870 | MsaT040568.1:CDS |
GCCTCCAGCACGGAAGGGTA+AGG | 0.541396 | 7:-101638864 | MsaT040568.1:CDS |
ATCTTCTTCTTTGACAGTAG+CGG | 0.541489 | 7:+101637584 | None:intergenic |
TCCTTACCCTTCCGTGCTGG+AGG | 0.542762 | 7:+101638863 | None:intergenic |
CATAAGAATGAGCAATTCAA+GGG | 0.546538 | 7:-101637757 | MsaT040568.1:CDS |
GAAATATAAGAAGGAACTTG+AGG | 0.547708 | 7:-101638952 | MsaT040568.1:CDS |
CGAGGGCTAAAACTGGTGTA+AGG | 0.548094 | 7:-101639795 | MsaT040568.1:CDS |
TCTAGACTCGCAATCTGAGC+CGG | 0.548400 | 7:+101639045 | None:intergenic |
CCAACACAATAAGTGTGTGC+AGG | 0.549150 | 7:+101638332 | None:intergenic |
TCTACAACTGGCAGAACTAT+CGG | 0.549352 | 7:-101637948 | MsaT040568.1:CDS |
GATCAGTCCTGAAAAGGAGA+AGG | 0.552181 | 7:-101639090 | MsaT040568.1:CDS |
TGGGGACAGACGGATGGTGG+AGG | 0.552215 | 7:+101637174 | None:intergenic |
ATGACACTCTGAACACATAA+CGG | 0.553670 | 7:+101638403 | None:intergenic |
ATGTGTTCAGAGTGTCATCT+AGG | 0.555373 | 7:-101638398 | MsaT040568.1:CDS |
TGCTCATTCTTATGGAGAAG+GGG | 0.556205 | 7:+101637766 | None:intergenic |
GAAGGGTAAGGAAAAGATAG+AGG | 0.556670 | 7:-101638852 | MsaT040568.1:CDS |
GTGTGAGAACAGATGGTAAA+GGG | 0.557092 | 7:-101640054 | None:intergenic |
CAACACAATAAGTGTGTGCA+GGG | 0.558064 | 7:+101638333 | None:intergenic |
TGATTCCGATGAGGATTATG+TGG | 0.558363 | 7:-101639968 | MsaT040568.1:CDS |
CATACCATACTCGCTGCTTG+TGG | 0.558512 | 7:-101637231 | MsaT040568.1:CDS |
AGTAGAGGACTTGAAGAGTG+AGG | 0.559366 | 7:-101638801 | MsaT040568.1:CDS |
ACACTTATTGTGTTGGTTTG+GGG | 0.561817 | 7:-101638325 | MsaT040568.1:CDS |
ATTCAAGTTACTTACTGTAC+CGG | 0.563595 | 7:+101637914 | None:intergenic |
TACAAAAGAATCAAAACAAG+AGG | 0.565655 | 7:+101637101 | None:intergenic |
ACCAGCAATTAATTCAATGT+GGG | 0.568218 | 7:+101637155 | None:intergenic |
ATGTGGGGACAGACGGATGG+TGG | 0.575769 | 7:+101637171 | None:intergenic |
CCTTGACTAAAAGATGTATG+AGG | 0.577067 | 7:+101638131 | None:intergenic |
ATCAGTCCTGAAAAGGAGAA+GGG | 0.579310 | 7:-101639089 | MsaT040568.1:CDS |
CAAACGTGATTTGAGAAAGA+GGG | 0.579793 | 7:-101640016 | MsaT040568.1:CDS |
ATGAAGATCTACATCAGCAA+TGG | 0.581305 | 7:-101638889 | MsaT040568.1:CDS |
AGAACAGGTGAGAGAAGCCG+TGG | 0.582933 | 7:-101638984 | MsaT040568.1:CDS |
CGGAAAAGGAGGTGATTCAA+CGG | 0.587891 | 7:-101639837 | MsaT040568.1:CDS |
ACTATCGGTGTTTCAGCTAC+CGG | 0.588312 | 7:-101637933 | MsaT040568.1:CDS |
CACCAGCAATTAATTCAATG+TGG | 0.590559 | 7:+101637154 | None:intergenic |
ACGATCAACAACAGCAGAAG+AGG | 0.590744 | 7:-101638606 | MsaT040568.1:CDS |
TATATGAACAGGTGATGGCC+GGG | 0.592446 | 7:+101638187 | None:intergenic |
TGACTAAATTTAATAGATCG+AGG | 0.593160 | 7:-101639813 | MsaT040568.1:CDS |
TTGCATTATGGAGTGGTCAA+AGG | 0.595849 | 7:-101638684 | MsaT040568.1:CDS |
TATATTTCCACACAACTCCA+CGG | 0.596331 | 7:+101638967 | None:intergenic |
AGTTGTGTGGAAATATAAGA+AGG | 0.598804 | 7:-101638961 | MsaT040568.1:CDS |
ATAGTAAACTCATAATCAGA+TGG | 0.599794 | 7:+101639022 | None:intergenic |
GGAGCTTCTCCGATGTCTGG+AGG | 0.601337 | 7:-101638062 | MsaT040568.1:CDS |
GTACTTTCAAGGACATTGCA+AGG | 0.602317 | 7:-101637263 | MsaT040568.1:CDS |
TGAACAGGTGATGGCCGGGA+AGG | 0.603021 | 7:+101638191 | None:intergenic |
AGGGTTAGGTCAAAGGGCAG+TGG | 0.607527 | 7:-101639997 | MsaT040568.1:CDS |
TGGAATCTCTGCTTACACAA+AGG | 0.608667 | 7:+101638647 | None:intergenic |
TCTCGTATATGAACAGGTGA+TGG | 0.613237 | 7:+101638182 | None:intergenic |
CGAATGGAAAATGAAGTGGT+TGG | 0.613778 | 7:-101638917 | MsaT040568.1:CDS |
GAAAAGATAGAGGAATCTCA+AGG | 0.614767 | 7:-101638842 | MsaT040568.1:CDS |
GCTTTGCTTGCATTATGGAG+TGG | 0.617447 | 7:-101638691 | MsaT040568.1:CDS |
GGTGCCCCACCTCCAGACAT+CGG | 0.618253 | 7:+101638053 | None:intergenic |
CGAAACCACATAATCCTCAT+CGG | 0.618800 | 7:+101639963 | None:intergenic |
TGATGGGTTTATAGAAGACG+AGG | 0.620222 | 7:-101639863 | MsaT040568.1:CDS |
GACTAAATTTAATAGATCGA+GGG | 0.620528 | 7:-101639812 | MsaT040568.1:CDS |
AGCCAACTGAAGAAGAACTC+AGG | 0.620739 | 7:-101638448 | MsaT040568.1:CDS |
GTTTCTGCAACTTCTAGCAG+AGG | 0.621858 | 7:-101639259 | MsaT040568.1:CDS |
TCAATGTGGGGACAGACGGA+TGG | 0.622245 | 7:+101637168 | None:intergenic |
CACCAACTTTATCAGAGAGA+CGG | 0.623622 | 7:-101638034 | MsaT040568.1:CDS |
AAACTGGTGTAAGGCGTCAG+CGG | 0.637909 | 7:-101639786 | MsaT040568.1:CDS |
TGTGTGAGAACAGATGGTAA+AGG | 0.641607 | 7:-101640055 | None:intergenic |
GAGGTGGGAAAACAGGTGTG+TGG | 0.642051 | 7:-101638782 | MsaT040568.1:CDS |
GAGCAATTCAAGGGGCCCAG+TGG | 0.643280 | 7:-101637748 | MsaT040568.1:CDS |
AGACGAGGATTCGGAAAAGG+AGG | 0.643886 | 7:-101639848 | MsaT040568.1:CDS |
TTCTCAACATATAAGAACAC+AGG | 0.644148 | 7:-101637865 | MsaT040568.1:CDS |
AGAGAAGCCGTGGAGTTGTG+TGG | 0.645101 | 7:-101638974 | MsaT040568.1:CDS |
ATCAACAACAGCAGAAGAGG+CGG | 0.646830 | 7:-101638603 | MsaT040568.1:CDS |
AGCAATGGAAGCCTCCAGCA+CGG | 0.653022 | 7:-101638874 | MsaT040568.1:CDS |
CATATAAGAACACAGGACGT+AGG | 0.654634 | 7:-101637858 | MsaT040568.1:CDS |
AAGAGAAGACGAAAGAATGG+AGG | 0.656131 | 7:-101639193 | MsaT040568.1:CDS |
TGGAAGCCTCCAGCACGGAA+GGG | 0.661115 | 7:-101638869 | MsaT040568.1:CDS |
TGTCATCTAGGTGGAGACGA+TGG | 0.665066 | 7:-101638386 | MsaT040568.1:CDS |
TGTTCAGAGTGTCATCTAGG+TGG | 0.667853 | 7:-101638395 | MsaT040568.1:CDS |
CCAGCAATTAATTCAATGTG+GGG | 0.670551 | 7:+101637156 | None:intergenic |
GTGTGGAATTTGTCTGTCTG+AGG | 0.671699 | 7:-101638765 | MsaT040568.1:CDS |
CAACTTTATCAGAGAGACGG+TGG | 0.672641 | 7:-101638031 | MsaT040568.1:CDS |
GAAGGTAATTGGTACTGTGA+TGG | 0.672974 | 7:-101638290 | MsaT040568.1:CDS |
TTGGGGAGAGAAGTACCTGA+AGG | 0.674115 | 7:-101638308 | MsaT040568.1:CDS |
TGGTTCTGATGATTCCGATG+AGG | 0.681336 | 7:-101639977 | MsaT040568.1:CDS |
TGGTTGAATCCTGAACCACT+GGG | 0.690869 | 7:+101637733 | None:intergenic |
TCAAGAATCTGATTTAAGAG+CGG | 0.691879 | 7:-101638228 | MsaT040568.1:CDS |
CAGATCAAACATTGTCACTG+AGG | 0.704891 | 7:-101637616 | MsaT040568.1:CDS |
ATAAGAATGAGCAATTCAAG+GGG | 0.716344 | 7:-101637756 | MsaT040568.1:CDS |
ATATATCACAGAGTAGCATG+AGG | 0.719343 | 7:+101638363 | None:intergenic |
GAATGTGTCTGATTGTCCAG+AGG | 0.723141 | 7:-101639929 | MsaT040568.1:CDS |
AACACAATAAGTGTGTGCAG+GGG | 0.725731 | 7:+101638334 | None:intergenic |
ACTCGAGCACAATACGAGTG+AGG | 0.731655 | 7:-101637208 | MsaT040568.1:CDS |
GAAAGAATGGAGGATCAACG+AGG | 0.744731 | 7:-101639183 | MsaT040568.1:CDS |
ACACAAGAATGTCTTCACAG+TGG | 0.768688 | 7:-101637053 | MsaT040568.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 101637035 | 101640064 | 101637035 | ID=MsaG040568 |
Chr7 | mRNA | 101637035 | 101640064 | 101637035 | ID=MsaT040568.1;Parent=MsaG040568 |
Chr7 | exon | 101637035 | 101637291 | 101637035 | ID=MsaT040568.1.exon4;Parent=MsaT040568.1 |
Chr7 | CDS | 101637035 | 101637291 | 101637035 | ID=cds.MsaT040568.1;Parent=MsaT040568.1 |
Chr7 | exon | 101637505 | 101638477 | 101637505 | ID=MsaT040568.1.exon3;Parent=MsaT040568.1 |
Chr7 | CDS | 101637505 | 101638477 | 101637505 | ID=cds.MsaT040568.1;Parent=MsaT040568.1 |
Chr7 | exon | 101638577 | 101639287 | 101638577 | ID=MsaT040568.1.exon2;Parent=MsaT040568.1 |
Chr7 | CDS | 101638577 | 101639287 | 101638577 | ID=cds.MsaT040568.1;Parent=MsaT040568.1 |
Chr7 | exon | 101639780 | 101640064 | 101639780 | ID=MsaT040568.1.exon1;Parent=MsaT040568.1 |
Chr7 | CDS | 101639780 | 101640064 | 101639780 | ID=cds.MsaT040568.1;Parent=MsaT040568.1 |
Gene Sequence |
Protein sequence |