AlfalfaGEDB | MsaG040703

M. sativa ssp. caerulea / MsaG040703

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040703	XP_003626377.2	97.727	176	4	0	4	179	1	176	8.62e-124	356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040703	sp\|O34569\|YOAA_BACSU	31.073	177	110	6	7	175	5	177	5.90e-17	77.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040703	tr\|G7L0S4\|G7L0S4_MEDTR	97.727	176	4	0	4	179	1	176	4.12e-124	356

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040703	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000210	MsaG040703	0.804537	3.476558e-49	5.214355e-47
MsaG000326	MsaG040703	0.811793	1.005905e-50	1.794787e-48
MsaG000382	MsaG040703	0.825339	8.780495e-54	2.229487e-51
MsaG000431	MsaG040703	0.822840	3.368863e-53	7.991400e-51
MsaG000456	MsaG040703	0.836521	1.630636e-56	5.716986e-54
MsaG000599	MsaG040703	0.827479	2.730530e-54	7.358379e-52
MsaG000646	MsaG040703	0.849164	7.316595e-60	3.854047e-57
MsaG000683	MsaG040703	0.808926	4.153668e-50	6.912034e-48
MsaG000832	MsaG040703	0.864899	1.742159e-64	1.639269e-61
MsaG000855	MsaG040703	0.835811	2.464505e-56	8.458053e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040703	MtrunA17_Chr7g0273661	97.436	156	4	0	4	159	1	156	2.14e-112	317
MsaG040703	MtrunA17_Chr7g0223361	58.523	176	72	1	4	179	1	175	2.65e-71	213
MsaG040703	MtrunA17_Chr7g0223351	60.920	174	66	2	4	177	1	172	3.78e-67	203
MsaG040703	MtrunA17_Chr1g0204971	46.784	171	86	2	7	174	19	187	5.30e-48	155
MsaG040703	MtrunA17_Chr1g0204951	45.614	171	88	2	7	174	19	187	5.67e-47	152
MsaG040703	MtrunA17_Chr5g0394621	42.442	172	96	1	6	174	16	187	1.12e-46	151
MsaG040703	MtrunA17_Chr5g0394631	42.604	169	94	1	3	168	13	181	2.21e-43	149
MsaG040703	MtrunA17_Chr5g0394631	43.429	175	90	5	7	174	226	398	2.54e-39	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040703	AT3G22560.1	55.422	166	72	1	11	174	7	172	1.06e-63	194
MsaG040703	AT2G32030.1	47.305	167	84	2	11	176	24	187	4.79e-57	178
MsaG040703	AT2G32020.1	47.701	174	87	2	4	176	12	182	1.21e-56	177

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Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGCCAAATCCATGA+TGG	0.623533	7:-102991308	None:intergenic
AAAGGCTGGGTTCCTTAGAG+AGG	0.612674	7:+102991252	MsaT040703.1:CDS
AAGGCTGGGTTCCTTAGAGA+GGG	0.646930	7:+102991253	MsaT040703.1:CDS
AATAGATCATAAAGAGTAAC+AGG	0.344936	7:-102991377	None:intergenic
ACGATTTCATGTTATGGGCA+GGG	0.580454	7:+102990894	MsaT040703.1:CDS
ACGTTGACGATTTCATGTTA+TGG	0.384226	7:+102990888	MsaT040703.1:CDS
AGAAAGTATACTTATATCAA+AGG	0.562044	7:+102991283	MsaT040703.1:CDS
AGACAGATCGAATGACGCCA+AGG	0.596639	7:-102991007	None:intergenic
AGACATCTTTGATGAAAGTT+AGG	0.305845	7:-102990973	None:intergenic
ATACACAGAAACAAAACCGA+TGG	0.615405	7:-102991041	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	102990827	102991393	102990827	ID=MsaG040703
Chr7	mRNA	102990827	102991393	102990827	ID=MsaT040703.1;Parent=MsaG040703
Chr7	exon	102990827	102991393	102990827	ID=MsaT040703.1.exon1;Parent=MsaT040703.1
Chr7	CDS	102990827	102991393	102990827	ID=cds.MsaT040703.1;Parent=MsaT040703.1

Gene Sequence

>MsaT040703.1

ATGACCAACATGGCAAAGGTGGATCTATCTAGGATATCTCTGAGGCCATTCAAGCTAACAGACGTTGACGATTTCATGTTATGGGCAGGGGACGATGAAGTAACCAAAAACATCCGATGGAAAACTTGCAATTCGAGGGAAGAAGCCCTAACTTTCATCAAAGATGTCTGCATACCTCACCCTTGGCGTCATTCGATCTGTCTCGACGACCGTTCCATCGGTTTTGTTTCTGTGTATCCTTGGTCAGGTGATGATAGGTGCAAAGCTGACATAGGTTATGCTGTTGCTTCTAACTATTGGGGTCAAGGGATAGCCACAAAAGCAATCAAAATTGCTCTGTCTCAAGTGTTTAATGATTTTTCTGATTTGTTAAGGTTGCAGGCTTTTACTTACGTGGATAACAAGGCTTCTCAAAGAGTTTTGGAAAAGGCTGGGTTCCTTAGAGAGGGTGTTCTTAGAAAGTATACTTATATCAAAGGTACCATCATGGATTTGGCTGTCTTTAGTTTTTTGTCAACAGATGAAATTCCTCCTGTTGATTATTTTGTCTCCTGTTACTCTTTATGA

Protein sequence

>MsaT040703.1

MTNMAKVDLSRISLRPFKLTDVDDFMLWAGDDEVTKNIRWKTCNSREEALTFIKDVCIPHPWRHSICLDDRSIGFVSVYPWSGDDRCKADIGYAVASNYWGQGIATKAIKIALSQVFNDFSDLLRLQAFTYVDNKASQRVLEKAGFLREGVLRKYTYIKGTIMDLAVFSFLSTDEIPPVDYFVSCYSL*