AlfalfaGEDB | MsaG040844

M. sativa ssp. caerulea / MsaG040844

KEGG: K04733
GO: -
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040844	XP_024625794.1	93.357	572	32	3	1	570	1	568	0.0	1058

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040844	sp\|Q8LEB6\|Y5185_ARATH	43.089	246	130	5	254	491	126	369	1.22e-51	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040844	tr\|G7L302\|G7L302_MEDTR	92.896	549	32	4	42	588	1	544	0.0	1042

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG024366	MsaG040844	0.813073	5.300331e-51	9.762374e-49
MsaG040844	MsaG041521	0.940973	2.755270e-100	2.807388e-95
MsaG040844	MsaG042510	0.811503	1.162686e-50	2.059817e-48
MsaG040844	MsaG033153	0.823649	2.185589e-53	5.299537e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040844	MtrunA17_Chr7g0275121	93.032	531	31	3	42	570	1	527	0.0	997
MsaG040844	MtrunA17_Chr6g0451071	36.723	354	212	5	227	574	2	349	1.18e-65	218
MsaG040844	MtrunA17_Chr8g0369231	33.136	338	204	6	243	560	214	549	4.88e-53	191
MsaG040844	MtrunA17_Chr7g0248904	36.806	288	178	3	279	562	350	637	6.23e-53	192
MsaG040844	MtrunA17_Chr1g0158231	31.443	388	217	8	211	560	25	401	7.65e-53	187
MsaG040844	MtrunA17_Chr6g0484231	35.890	326	195	5	274	586	34	358	8.16e-53	185
MsaG040844	MtrunA17_Chr3g0125491	36.156	307	186	5	279	579	45	347	1.18e-52	183
MsaG040844	MtrunA17_Chr5g0403051	37.778	315	180	5	261	562	296	607	1.20e-52	191
MsaG040844	MtrunA17_Chr3g0144551	43.318	217	120	1	278	491	121	337	3.03e-52	185
MsaG040844	MtrunA17_Chr8g0369211	31.579	361	224	7	224	563	547	905	4.49e-52	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040844	AT1G56720.3	43.805	226	122	3	277	498	165	389	9.03e-53	188
MsaG040844	AT1G56720.1	43.805	226	122	3	277	498	165	389	9.03e-53	188
MsaG040844	AT1G56720.2	43.805	226	122	3	277	498	165	389	9.03e-53	188
MsaG040844	AT1G56720.4	43.805	226	122	3	277	498	165	389	9.03e-53	188
MsaG040844	AT5G18500.2	43.089	246	130	5	254	491	126	369	1.24e-52	187
MsaG040844	AT5G18500.5	43.089	246	130	5	254	491	126	369	1.24e-52	187
MsaG040844	AT5G18500.4	43.089	246	130	5	254	491	126	369	1.24e-52	187
MsaG040844	AT5G18500.1	43.089	246	130	5	254	491	126	369	1.24e-52	187
MsaG040844	AT5G18500.3	43.089	246	130	5	254	491	126	369	1.24e-52	187
MsaG040844	AT5G18500.6	43.089	246	130	5	254	491	126	369	1.24e-52	187

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGATATAACCAAAT+GGG	0.446888	7:+104485895	MsaT040844.1:CDS
AAAAGATAAACCTTGGACGC+GGG	0.536874	7:+104487068	MsaT040844.1:CDS
AAACAGATAGCTACTTGGTC+TGG	0.466838	7:+104486992	MsaT040844.1:CDS
AAAGACAAGGTGGCGAGCCA+TGG	0.543622	7:-104483885	None:intergenic
AAAGAGGATATAACCAAATG+GGG	0.650234	7:+104485896	MsaT040844.1:CDS
AAATGATAAATGCAAAGACA+AGG	0.676264	7:-104483898	None:intergenic
AAATGGGGCAGTGGCAGTGA+TGG	0.530740	7:+104485911	MsaT040844.1:CDS
AACAGCCAAACAAGCAAACA+AGG	0.585721	7:-104487228	None:intergenic
AACAGCTAGTAAAGATAAAT+TGG	0.245513	7:-104486134	None:intergenic
AACCTTGGACGCGGGAGTGC+AGG	0.467218	7:+104487076	MsaT040844.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	104483887	104488357	104483887	ID=MsaG040844
Chr7	mRNA	104483887	104488357	104483887	ID=MsaT040844.1;Parent=MsaG040844
Chr7	exon	104483887	104483968	104483887	ID=MsaT040844.1.exon1;Parent=MsaT040844.1
Chr7	CDS	104483887	104483968	104483887	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104485828	104486424	104485828	ID=MsaT040844.1.exon2;Parent=MsaT040844.1
Chr7	CDS	104485828	104486424	104485828	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104486870	104487322	104486870	ID=MsaT040844.1.exon3;Parent=MsaT040844.1
Chr7	CDS	104486870	104487322	104486870	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104487427	104487542	104487427	ID=MsaT040844.1.exon4;Parent=MsaT040844.1
Chr7	CDS	104487427	104487542	104487427	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104487641	104487901	104487641	ID=MsaT040844.1.exon5;Parent=MsaT040844.1
Chr7	CDS	104487641	104487901	104487641	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104488002	104488196	104488002	ID=MsaT040844.1.exon6;Parent=MsaT040844.1
Chr7	CDS	104488002	104488196	104488002	ID=cds.MsaT040844.1;Parent=MsaT040844.1
Chr7	exon	104488295	104488357	104488295	ID=MsaT040844.1.exon7;Parent=MsaT040844.1
Chr7	CDS	104488295	104488357	104488295	ID=cds.MsaT040844.1;Parent=MsaT040844.1

Gene Sequence

>MsaT040844.1

ATGGCTCGCCACCTTGTCTTTGCATTTATCATTTTTGCTATTTTTATACACTCTCTATCTTCTGCACCCAATGACACACAAGGTACATGTGTATTGGATTTCAATGCATACCAAAATGAATATATGCCATTTGGTGAATGTGGGGGTGCAAAAGAGGATATAACCAAATGGGGCAGTGGCAGTGATGGTTTCCCAACTACTCTCTGCTGCAGAAATGCTCTGACCATTTTGTCAGATGCCATGGCCTCACAAGTCCGTAACACAAAAGGACAAATGTTCCTTTCTCAAGAACAATGGCAAAGTTGCAACCAATCATTTCATCCACAACCAGGGATGTCACTCTCTTCATGTGGCTTTGATAACTTTTACTTTGGTAGCTCTCAATGCTCCAATTTATCTTTACTAGCTGTTCAGAACTCGCAAAAGTACTCAGATGCATTGAATCAATGCAGCCACTTCGACCTTTCGTTTGATGAGTCGTGTGAGGATTGTACAACTGCAATATTGGATCTGAGAAATAGTTTGTATGACGCAACAGGGCCGGACAGCAATGATATTGAGAGAGCCATTTGCGGAGTAGCAGCTCTTGTTGCTGTTGCATTTGAGCAACAAAATGATCCTTTCCTTGCTGACAAATTCTTGCGTTGCTTGCCACCTCCAGCAGCAGTACATGACAAGAAATCATCAATGAAGAAACTTGTGTTGGCAATGTTGGTGATGGCTATCTTAGCATTATTGATTATTGCTTTTCTGGTAAAATGTGTATCAAAGAAGAAGCCTGTTAAGAAGCACGTCCAGTTGAAACAGATAGCTACTTGGTCTGGACTGTACTGGTTCACAAAAACTGAAATTGAAAATGCCATGAATTTTGAAAATGAAAAGATAAACCTTGGACGCGGGAGTGCAGGTGAAGTGTTTAGAGGTGTTTTGCCAAGTGGTCAAGTTGTGGCCATCAAGCATTTGACAAAGAGTAATACCTCTAGTTCTGATTCTTTCACTCGAGAACTTGCTGGTCTTTCTAGACTTCGTCATCCAAACCTTGTTTGCTTGTTTGGCTGTTGTATGGAAGATGGCGAAAGATATCTCGTCTACGAGTTCTGTGCCAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGACAGCCATTTGACATGGGAAGCAAGAGTGAAGATTTTGAGAGAATGTTCATTTGCGCTTAAGTATCTCCATCATCATATAGAGGGTTGTGTTGTCCATAGAGATATCAAGCTTACAAACATTCTTTTGACTGAGAAATACGAAGCCAAACTGTCGGATTTTGGATTGTCAAGGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACTATAGGTTACATGGATCCAGAGTACATGAGTAATGCCAAGTTAACTTGTGCCAGTGATGTATATAGTTTTGGAATTGTTGCTTTGCAAATTCTGTCAGGACAGAAAGTCATAGAGTTGGATCTTGATGCAAGAGATCAGCTCACCAGAAAGAGATGTGAGTATGGGAAAGCGTCCATTGTCGGATTTTGTAGACTCGCGACTAAAGGACAAGTTGATAAGGAGGACTTTGGAGCTATTTTACAGATTGCAGTACTTTGTGTTGCCAAATCAAGCACAGGTCGGCCACCAATTGAGGTTGTTTTTGACGAATTGGACAAAGTCTATAGGGACATTGAGGCGCGCAAGAAGGCAACCCCAACAACATCAACAACAACATCAACATCAACATCAACATCTAGCTCTAACTGA

Protein sequence

>MsaT040844.1

MARHLVFAFIIFAIFIHSLSSAPNDTQGTCVLDFNAYQNEYMPFGECGGAKEDITKWGSGSDGFPTTLCCRNALTILSDAMASQVRNTKGQMFLSQEQWQSCNQSFHPQPGMSLSSCGFDNFYFGSSQCSNLSLLAVQNSQKYSDALNQCSHFDLSFDESCEDCTTAILDLRNSLYDATGPDSNDIERAICGVAALVAVAFEQQNDPFLADKFLRCLPPPAAVHDKKSSMKKLVLAMLVMAILALLIIAFLVKCVSKKKPVKKHVQLKQIATWSGLYWFTKTEIENAMNFENEKINLGRGSAGEVFRGVLPSGQVVAIKHLTKSNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLRRDSHLTWEARVKILRECSFALKYLHHHIEGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKRCEYGKASIVGFCRLATKGQVDKEDFGAILQIAVLCVAKSSTGRPPIEVVFDELDKVYRDIEARKKATPTTSTTTSTSTSTSSSN*