AlfalfaGEDB | MsaG040845

M. sativa ssp. caerulea / MsaG040845

KEGG: K04733
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0038023 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0051286 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040845	XP_039683964.1	93.596	609	19	1	1	589	1	609	0.0	1161

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040845	sp\|Q9SFT7\|PBL26_ARATH	61.600	375	107	3	1	338	1	375	5.84e-161	469

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040845	tr\|G7L303\|G7L303_MEDTR	93.596	609	19	1	1	589	1	609	0.0	1161

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040845	MtrunA17_Chr7g0275131	93.596	609	19	1	1	589	1	609	0.0	1161
MsaG040845	MtrunA17_Chr1g0189791	51.373	619	249	11	1	583	1	603	0.0	539
MsaG040845	MtrunA17_Chr7g0237401	67.492	323	101	1	38	356	78	400	3.68e-155	452
MsaG040845	MtrunA17_Chr2g0286281	58.356	365	117	2	3	332	4	368	7.48e-147	433
MsaG040845	MtrunA17_Chr1g0213991	67.347	294	96	0	38	331	82	375	7.56e-143	422
MsaG040845	MtrunA17_Chr7g0263521	64.966	294	103	0	38	331	58	351	4.10e-139	409
MsaG040845	MtrunA17_Chr1g0181821	63.390	295	108	0	38	332	59	353	4.17e-136	401
MsaG040845	MtrunA17_Chr3g0143961	52.589	367	144	4	1	338	1	366	2.93e-130	386
MsaG040845	MtrunA17_Chr2g0327471	60.339	295	117	0	38	332	76	370	1.16e-129	386
MsaG040845	MtrunA17_Chr2g0288121	59.589	292	118	0	41	332	30	321	9.40e-128	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040845	AT3G07070.1	61.600	375	107	3	1	338	1	375	5.93e-162	469
MsaG040845	AT3G02810.1	64.706	357	112	4	1	344	1	356	2.27e-161	473
MsaG040845	AT5G16500.1	61.602	362	120	5	1	344	5	365	9.89e-156	461
MsaG040845	AT3G24790.2	64.327	342	110	2	1	330	1	342	1.18e-150	439
MsaG040845	AT3G24790.1	70.990	293	85	0	38	330	32	324	9.03e-148	431
MsaG040845	AT4G13190.1	68.814	295	92	0	38	332	56	350	2.95e-145	425
MsaG040845	AT5G18610.1	63.354	322	115	1	11	332	44	362	2.22e-144	427
MsaG040845	AT5G18610.2	63.354	322	115	1	11	332	44	362	2.22e-144	427
MsaG040845	AT5G18610.3	63.354	322	115	1	11	332	44	362	2.22e-144	427
MsaG040845	AT5G02800.1	63.208	318	110	2	38	348	58	375	1.10e-140	413

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Find 116 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGACCACAAAAGCAGT+AGG	0.603440	7:-104490165	MsaT040845.1:CDS
AAAGGAACAATTCCTGCTAC+AGG	0.513896	7:-104493165	MsaT040845.1:CDS
AAATCAGATGTGTACAGTTT+TGG	0.283384	7:-104491195	MsaT040845.1:CDS
AAATCCTTCAATTATATACA+GGG	0.655416	7:-104491388	MsaT040845.1:CDS
AACAATTCCTGCTACAGGAC+AGG	0.494209	7:-104493160	MsaT040845.1:intron
AACCTTATAACCAGAACACC+AGG	0.626594	7:-104493496	MsaT040845.1:intron
AACGGTCCCCTTCCTTGATT+TGG	0.276605	7:+104490225	None:intergenic
AAGCAGCACCAAATCAAGGA+AGG	0.552995	7:-104490233	MsaT040845.1:CDS
AAGTAAAGAATTTCTGGTTG+AGG	0.511705	7:-104492977	MsaT040845.1:CDS
AAGTCCCTGTATATAATTGA+AGG	0.426982	7:+104491384	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	104489778	104493608	104489778	ID=MsaG040845
Chr7	mRNA	104489778	104493608	104489778	ID=MsaT040845.1;Parent=MsaG040845
Chr7	exon	104489778	104490734	104489778	ID=MsaT040845.1.exon5;Parent=MsaT040845.1
Chr7	CDS	104489778	104490734	104489778	ID=cds.MsaT040845.1;Parent=MsaT040845.1
Chr7	exon	104491113	104491504	104491113	ID=MsaT040845.1.exon4;Parent=MsaT040845.1
Chr7	CDS	104491113	104491504	104491113	ID=cds.MsaT040845.1;Parent=MsaT040845.1
Chr7	exon	104492851	104493040	104492851	ID=MsaT040845.1.exon3;Parent=MsaT040845.1
Chr7	CDS	104492851	104493040	104492851	ID=cds.MsaT040845.1;Parent=MsaT040845.1
Chr7	exon	104493161	104493279	104493161	ID=MsaT040845.1.exon2;Parent=MsaT040845.1
Chr7	CDS	104493161	104493279	104493161	ID=cds.MsaT040845.1;Parent=MsaT040845.1
Chr7	exon	104493497	104493608	104493497	ID=MsaT040845.1.exon1;Parent=MsaT040845.1
Chr7	CDS	104493497	104493608	104493497	ID=cds.MsaT040845.1;Parent=MsaT040845.1

Gene Sequence

>MsaT040845.1

ATGAATTGCTTTCCTTGTTTTACCTCTCAAAAGAGTAAGAAAAGCAATAGCAGGAGGGAAAATGGGGTTGCACCACCTCAAGAAAATAATAACCTTATAACCAGAACACCAGCACAAAATTTCACATTTCGCGAGTTAGCAATCGCAACAAAGAATTTTCGTCAAGAATGTTTGATGGGTGAAGGTGGTTTTGGTAGAGTTTACAAAGGAACAATTCCTGCTACAGGACAGGTGGTAGCAGTGAAGCAACTTGATCGAAATGGGATTCAAGGAAGTAAAGAATTTCTGGTTGAGGTTTTGATGTTGAGTCTCTTAAACCATGATAATCTTGTCAAACTCACTGGTTATTGTGCCGATGGTGATCAACGTCTTTTGGTCTATGAATTCATGTCAGGGGGCTCTCTAGAAAGTTGTCTTCTTGAGCGAAGAAATGATCAAGATCCATTAGATTGGTATAGCAGAATGAAAATAGCATCTAGTACTGCAAAAGGATTGTGGTACTTGCACGACAAGGCAAATCCTTCAATTATATACAGGGACTTGAAATCGTCGAACATTTTGCTTGATAAAGATCTTAATGCAAAATTATCTGATTACGGACTTGCCAAACTTGCTGGTAAAGATAAGGCTAACATTGTGCCTACAAGAGTCATGGGTACTTATGGTTATAGTGCCCCTGAGTATGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTGTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATTACCGGAAGACGAGCCGTTGACACCACAAGATCGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCAATATTTAGAGATCCTAAAAGATATGGAGATATGGCAGATCCAAATCTGAATAAAAATTATCCAGAAAAGGATCTGAATCAAGTTGTTGCAATTGCAGCCATGTGCTTACAAGAGGAATCAGCAGCGCGTCCTTTGATGAGTGATGTTGTAACTGCTTTGAGTTTTCTTTCCACTTCTCCTCCTCCAGAACCTGTTCCTGCACCTCTTCCACCTCCCAATTCTACCTCCCAAAAGAGTGTTGCCACTGCCGATGAAAGTGAGAGCGAAAATGATAACGACAGCCATAGTTCCGATGAAGAGCGGTCTGTTCACGAGGATAATAAGTCTATTACAGCAGCTAGTGCAAAACACCAAGAACATGATGATGTCTCTGATACTGAACGGGATTATTATGATAATGAAAACCAACATGATTATAGTTCACAAGATGCTAAAGAAACAAAGGAGTTCTACTCCAAGTCAAGCCGCAAAAGCAGCACCAAATCAAGGAAGGGGACCGTTTCTTCTGGCCGAAGGAACAACTCCAGTTCAGATTCAGAAAATGACCACAAAAGCAGTAGGAGAAAGCATGATGTGGATGGAAGTTTAACTCAGAAAAGCAGCAAAAAATCTGCTGCAAGAGATTTAAGACAGAAGAGCAGTAAGAAATCTACGGTAACAAAGGATTTAAGCCAAAAGAACAGTAAAAAATATTCTGCAAGTGTTGTAAGTCGATCATCTCATAGCAGCAGCGACGAGGAGTCACATGATGGAGGTGTTCTTCTCAAGCGCGGTGACAGTAGGCCATCACATGATGGAAATGGATATTCCTTTGGCCTAGTGAGCAGTGATAGTGAGGAAGGATCACATTTTGATCGCATGAGCACGGGGGGGTCTGAGGAGGGAAGCTTTCACCATTTCCAACATTCCAGCAGCAGAAAATCAGATGAGGGAAGTGTTCATTCATGA

Protein sequence

>MsaT040845.1

MNCFPCFTSQKSKKSNSRRENGVAPPQENNNLITRTPAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGIQGSKEFLVEVLMLSLLNHDNLVKLTGYCADGDQRLLVYEFMSGGSLESCLLERRNDQDPLDWYSRMKIASSTAKGLWYLHDKANPSIIYRDLKSSNILLDKDLNAKLSDYGLAKLAGKDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKRYGDMADPNLNKNYPEKDLNQVVAIAAMCLQEESAARPLMSDVVTALSFLSTSPPPEPVPAPLPPPNSTSQKSVATADESESENDNDSHSSDEERSVHEDNKSITAASAKHQEHDDVSDTERDYYDNENQHDYSSQDAKETKEFYSKSSRKSSTKSRKGTVSSGRRNNSSSDSENDHKSSRRKHDVDGSLTQKSSKKSAARDLRQKSSKKSTVTKDLSQKNSKKYSASVVSRSSHSSSDEESHDGGVLLKRGDSRPSHDGNGYSFGLVSSDSEEGSHFDRMSTGGSEEGSFHHFQHSSSRKSDEGSVHS*