AlfalfaGEDB | MsaG040871

M. sativa ssp. caerulea / MsaG040871

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040871	RHN49520.1	91.126	293	24	2	1	292	1	292	0.0	518

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040871	sp\|A2X1N2\|ORR24_ORYSI	56.870	262	111	1	3	262	23	284	1.63e-96	300

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040871	tr\|A0A396H8C6\|A0A396H8C6_MEDTR	91.126	293	24	2	1	292	1	292	0.0	518

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040871	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040871	MtrunA17_Chr7g0275401	91.126	293	24	2	1	292	1	292	0.0	518
MsaG040871	MtrunA17_Chr7g0275891	65.337	326	75	5	1	291	1	323	1.08e-133	382
MsaG040871	MtrunA17_Chr1g0149841	76.834	259	60	0	1	259	1	259	2.93e-128	374
MsaG040871	MtrunA17_Chr1g0149851	60.294	340	86	4	1	291	1	340	1.70e-118	350
MsaG040871	MtrunA17_Chr3g0137101	55.063	316	112	4	2	288	5	319	2.48e-100	307
MsaG040871	MtrunA17_Chr1g0149831	73.469	196	49	1	64	259	1	193	1.13e-86	258
MsaG040871	MtrunA17_Chr2g0304841	51.429	280	123	5	3	272	16	292	8.07e-82	260
MsaG040871	MtrunA17_Chr1g0161431	49.064	267	119	4	4	260	10	269	4.31e-76	243
MsaG040871	MtrunA17_Chr2g0294911	47.222	288	142	4	1	286	25	304	1.04e-75	242
MsaG040871	MtrunA17_Chr4g0074411	53.252	246	112	2	5	250	18	260	1.37e-75	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040871	AT4G31920.1	58.301	259	92	2	3	261	11	253	1.50e-90	280
MsaG040871	AT2G25180.1	57.088	261	106	3	3	262	11	266	6.53e-88	274
MsaG040871	AT3G16857.1	46.102	295	116	6	5	267	33	316	3.62e-74	240
MsaG040871	AT3G16857.2	46.102	295	116	6	5	267	33	316	7.73e-74	239
MsaG040871	AT5G58080.1	48.754	281	116	5	3	272	12	275	1.30e-70	229
MsaG040871	AT2G01760.1	48.031	254	125	3	1	247	3	256	2.91e-69	219
MsaG040871	AT1G67710.1	50.000	254	114	4	7	253	9	256	1.22e-68	222
MsaG040871	AT2G01760.2	42.662	293	132	5	1	258	3	294	3.95e-63	204
MsaG040871	AT3G16857.3	45.136	257	98	6	43	267	1	246	2.81e-59	199
MsaG040871	AT5G49240.1	37.815	238	143	4	5	240	38	272	2.28e-45	155

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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCGAGCTAATATGG+TGG	0.705104	7:-104734890	MsaT040871.1:CDS
AAACTTGTGGTGTAAGTCAT+TGG	0.441523	7:+104735569	None:intergenic
AAATCTTACAAAGGAACATG+TGG	0.625593	7:-104735211	MsaT040871.1:CDS
AACCCATGTATATTGACACT+AGG	0.674841	7:+104734823	None:intergenic
AAGTTGAAAAGTAGTAGTTA+TGG	0.482179	7:-104734916	MsaT040871.1:CDS
ACACCACAAGTTTCTTGTCG+CGG	0.645407	7:-104735559	MsaT040871.1:CDS
ACATGTGGCCAGCCATCTCC+AGG	0.523004	7:-104735196	MsaT040871.1:intron
AGCTTAAATCCATCCATGTC+TGG	0.471845	7:+104736052	None:intergenic
AGTTGAAAAGTAGTAGTTAT+GGG	0.440897	7:-104734915	MsaT040871.1:CDS
ATAACTTACTTATGACAGGT+AGG	0.629417	7:+104736002	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	104734792	104736781	104734792	ID=MsaG040871
Chr7	mRNA	104734792	104736781	104734792	ID=MsaT040871.1;Parent=MsaG040871
Chr7	exon	104734792	104734950	104734792	ID=MsaT040871.1.exon5;Parent=MsaT040871.1
Chr7	CDS	104734792	104734950	104734792	ID=cds.MsaT040871.1;Parent=MsaT040871.1
Chr7	exon	104735197	104735273	104735197	ID=MsaT040871.1.exon4;Parent=MsaT040871.1
Chr7	CDS	104735197	104735273	104735197	ID=cds.MsaT040871.1;Parent=MsaT040871.1
Chr7	exon	104735538	104735924	104735538	ID=MsaT040871.1.exon3;Parent=MsaT040871.1
Chr7	CDS	104735538	104735924	104735538	ID=cds.MsaT040871.1;Parent=MsaT040871.1
Chr7	exon	104736011	104736163	104736011	ID=MsaT040871.1.exon2;Parent=MsaT040871.1
Chr7	CDS	104736011	104736163	104736011	ID=cds.MsaT040871.1;Parent=MsaT040871.1
Chr7	exon	104736679	104736781	104736679	ID=MsaT040871.1.exon1;Parent=MsaT040871.1
Chr7	CDS	104736679	104736781	104736679	ID=cds.MsaT040871.1;Parent=MsaT040871.1

Gene Sequence

>MsaT040871.1

ATGAATGATGAGTTTCGAATTGGAATGAATATTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTGGAGAGACTTCTCGAAAGGTGTCAATACCATGTAACCACTGCTCCAAGTGCACGAATAGCACTGAATTTGTTAAGAGAAAACAAAAACAATTTTGACCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAAATGGACCTACCTGTCATAATGTTTTCTGAAAATGATGATCCTAAGCTGGTTATGAAAGCAATTGATCTCGGTGCTTGTGATTATCTGCTGAAACCTGTTCAATTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAATTAGCAAAAGAAGCAATCACGATGTGCCTAATTCTGATAGTGGAAATGGAATAGATTCAACTGTGACAAAAAATTCTGATAAAATTGAAAAGCCATCTAGAAAAAGAAAGGATAAGAATGAAGATGATGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACTGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTCTTGTCGCGGTTAACAAATTTGGCGTTGAAAAGGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGCCAGCCATCTCCAGAAATATAGACTAAAGTTGAAAAGTAGTAGTTATGGGAAAAACCATCGAGCTAATATGGTGGCTAGTGGTTCTGATACATCATCTCACTCAAGAATTGACACTCCTCCTAGTGTCAATATACATGGGTTGGCTACTCTTGATTTAAACAACTCCTTGTAA

Protein sequence

>MsaT040871.1

MNDEFRIGMNILAVDDDRTCLKILERLLERCQYHVTTAPSARIALNLLRENKNNFDLVMSNVHMPDMDGFKLLELVGLEMDLPVIMFSENDDPKLVMKAIDLGACDYLLKPVQLKEVKMIWQHVIRKKKISKRSNHDVPNSDSGNGIDSTVTKNSDKIEKPSRKRKDKNEDDVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFLVAVNKFGVEKARPQKILNLMNVENLTKEHVASHLQKYRLKLKSSSYGKNHRANMVASGSDTSSHSRIDTPPSVNIHGLATLDLNNSL*