AlfalfaGEDB | MsaG040894

M. sativa ssp. caerulea / MsaG040894

KEGG: K22155 K22156
GO: GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252
PFAM: PF00855.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040894	XP_013450600.1	95.859	966	38	1	1	966	1	964	0.0	1927

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040894	sp\|Q9M364\|ATX3_ARATH	54.479	960	367	11	60	966	76	1018	0.0	1054

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040894	tr\|A0A072U651\|A0A072U651_MEDTR	95.859	966	38	1	1	966	1	964	0.0	1927

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TFs/TRs:

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Gene ID	Type	Classification
MsaG040894	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040894	MtrunA17_Chr7g0275611	95.859	966	38	1	1	966	1	964	0.0	1927
MsaG040894	MtrunA17_Chr8g0347071	71.223	834	210	5	162	966	117	949	0.0	1249
MsaG040894	MtrunA17_Chr3g0126701	54.073	982	393	14	39	966	86	1063	0.0	1033
MsaG040894	MtrunA17_Chr1g0147121	54.211	950	387	10	57	966	93	1034	0.0	1007
MsaG040894	MtrunA17_Chr7g0221611	31.884	483	258	15	526	966	592	1045	2.84e-53	202
MsaG040894	MtrunA17_Chr1g0149611	29.457	387	218	15	597	966	160	508	7.78e-36	143
MsaG040894	MtrunA17_Chr1g0149581	47.183	142	68	4	830	966	1527	1666	3.45e-30	129
MsaG040894	MtrunA17_Chr2g0297191	41.958	143	78	3	825	966	1033	1171	4.06e-29	125
MsaG040894	MtrunA17_Chr1g0201621	38.816	152	87	4	816	965	76	223	2.82e-20	95.5
MsaG040894	MtrunA17_Chr1g0194631	38.028	142	72	4	825	953	611	749	9.57e-20	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040894	AT3G61740.2	56.757	925	364	12	60	966	76	982	0.0	1068
MsaG040894	AT3G61740.1	54.479	960	367	11	60	966	76	1018	0.0	1054
MsaG040894	AT5G53430.1	51.499	967	393	10	57	966	96	1043	0.0	984
MsaG040894	AT4G27910.1	52.266	949	394	12	57	966	99	1027	0.0	964
MsaG040894	AT1G05830.2	26.643	837	476	32	179	966	312	1059	2.86e-64	236
MsaG040894	AT1G05830.4	26.643	837	476	32	179	966	312	1059	2.86e-64	236
MsaG040894	AT1G05830.1	26.643	837	476	32	179	966	312	1059	2.86e-64	236
MsaG040894	AT1G05830.3	26.643	837	476	32	179	966	312	1059	2.86e-64	236
MsaG040894	AT2G31650.1	31.325	498	287	15	496	966	569	1038	5.64e-64	235
MsaG040894	AT5G42400.7	38.323	167	90	4	801	966	1234	1388	2.54e-28	124

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Find 225 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGGCATTGGCTGAA+TGG	0.444691	7:-104956265	MsaT040894.1:CDS
AAAATAAGTACCTTATTGGG+AGG	0.624661	7:+104953699	None:intergenic
AAAATCAGCTATTCAAGGGT+GGG	0.563568	7:-104953059	MsaT040894.1:CDS
AAACATAACACAAATTGCAT+CGG	0.525202	7:+104958516	None:intergenic
AAACATAGTGTGAAAGTAGA+AGG	0.474293	7:-104956209	MsaT040894.1:CDS
AAACCCAGGAAGTAAAATCT+TGG	0.450551	7:+104955421	None:intergenic
AAAGCAGGCATTGGCTGAAT+GGG	0.423928	7:-104956264	MsaT040894.1:CDS
AAATCAGCTATTCAAGGGTG+GGG	0.556616	7:-104953058	MsaT040894.1:CDS
AAATTAAAATCACCTGGCCT+TGG	0.481839	7:+104958053	None:intergenic
AACAACTTGTACAGGAACCA+TGG	0.635744	7:+104954343	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	104950615	104959190	104950615	ID=MsaG040894
Chr7	mRNA	104950615	104959190	104950615	ID=MsaT040894.1;Parent=MsaG040894
Chr7	exon	104950615	104950705	104950615	ID=MsaT040894.1.exon23;Parent=MsaT040894.1
Chr7	CDS	104950615	104950705	104950615	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104950838	104950938	104950838	ID=MsaT040894.1.exon22;Parent=MsaT040894.1
Chr7	CDS	104950838	104950938	104950838	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104951094	104951168	104951094	ID=MsaT040894.1.exon21;Parent=MsaT040894.1
Chr7	CDS	104951094	104951168	104951094	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104952829	104952915	104952829	ID=MsaT040894.1.exon20;Parent=MsaT040894.1
Chr7	CDS	104952829	104952915	104952829	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104953021	104953110	104953021	ID=MsaT040894.1.exon19;Parent=MsaT040894.1
Chr7	CDS	104953021	104953110	104953021	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104953302	104953349	104953302	ID=MsaT040894.1.exon18;Parent=MsaT040894.1
Chr7	CDS	104953302	104953349	104953302	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104953449	104953532	104953449	ID=MsaT040894.1.exon17;Parent=MsaT040894.1
Chr7	CDS	104953449	104953532	104953449	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104953710	104953923	104953710	ID=MsaT040894.1.exon16;Parent=MsaT040894.1
Chr7	CDS	104953710	104953923	104953710	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104954011	104954075	104954011	ID=MsaT040894.1.exon15;Parent=MsaT040894.1
Chr7	CDS	104954011	104954075	104954011	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104954284	104954388	104954284	ID=MsaT040894.1.exon14;Parent=MsaT040894.1
Chr7	CDS	104954284	104954388	104954284	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104954720	104954865	104954720	ID=MsaT040894.1.exon13;Parent=MsaT040894.1
Chr7	CDS	104954720	104954865	104954720	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104955364	104955488	104955364	ID=MsaT040894.1.exon12;Parent=MsaT040894.1
Chr7	CDS	104955364	104955488	104955364	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104955637	104955736	104955637	ID=MsaT040894.1.exon11;Parent=MsaT040894.1
Chr7	CDS	104955637	104955736	104955637	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104955890	104955962	104955890	ID=MsaT040894.1.exon10;Parent=MsaT040894.1
Chr7	CDS	104955890	104955962	104955890	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104956184	104956319	104956184	ID=MsaT040894.1.exon9;Parent=MsaT040894.1
Chr7	CDS	104956184	104956319	104956184	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104956705	104956797	104956705	ID=MsaT040894.1.exon8;Parent=MsaT040894.1
Chr7	CDS	104956705	104956797	104956705	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104956903	104956994	104956903	ID=MsaT040894.1.exon7;Parent=MsaT040894.1
Chr7	CDS	104956903	104956994	104956903	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104957108	104957176	104957108	ID=MsaT040894.1.exon6;Parent=MsaT040894.1
Chr7	CDS	104957108	104957176	104957108	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104957278	104957346	104957278	ID=MsaT040894.1.exon5;Parent=MsaT040894.1
Chr7	CDS	104957278	104957346	104957278	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104957445	104957552	104957445	ID=MsaT040894.1.exon4;Parent=MsaT040894.1
Chr7	CDS	104957445	104957552	104957445	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104958066	104958234	104958066	ID=MsaT040894.1.exon3;Parent=MsaT040894.1
Chr7	CDS	104958066	104958234	104958066	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104958325	104958380	104958325	ID=MsaT040894.1.exon2;Parent=MsaT040894.1
Chr7	CDS	104958325	104958380	104958325	ID=cds.MsaT040894.1;Parent=MsaT040894.1
Chr7	exon	104958486	104959190	104958486	ID=MsaT040894.1.exon1;Parent=MsaT040894.1
Chr7	CDS	104958486	104959190	104958486	ID=cds.MsaT040894.1;Parent=MsaT040894.1

Gene Sequence

>MsaT040894.1

ATGAAATCTGGAATTCAGAATCTGAAGCGATGTAGTAAGCTAGAAGAAGAATCTCCATCACAGATTCAGAAGAAGCCCAAACTCAATAACGCGTTTTACTCTGTCCGTGATGGCGAGATCCACTCCAATTCAGCTTCCACCGATTTGAATATTGTAGCTGAAAATGCACCTCCATTGTCGCGATCATCCAGAGGCCGCGTTAAAATGCTTCCATCCAAGTTCAAGGACTCTGTACTTCTCGGTACTCAGAAGAAGAAGAAGAAGAGTCAACAAATCAAAAGATCTAAGCTCGGTTTTGAAGGTGAGAATAGTGACATTGGAATTAGATTTGTAAATAAGGGAAAGGAAAACAAATGCGATTTGAAAAAAGCGATTGATAATGGTTTTGATGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAAAGACGGTTAAAGGGAGTCGTATGTTATTGGTTAAAGCGGAGAGTGAAAATGGTTTTGATGAAAAGGGTAAAAAGGGGAAAGAGATTTTCAAACTAGTGGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTCGTCATTGATCCTATTTTGCAAGCTCCCGAGTCTGTTCTTAGGCGCTGTGTTCCCGATGCAATTTGTGTTATGTTTTTCGGTTATTCAAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCATACCCGATTGTACAAGACCAAAGAAAGTGACTTTCATAAGGCAATGGAGGAGGCAATGTTGGCAGATAATGGCATTCTGGATCCACATTATAGAGCTGAGCAAATTGTGGAGGGTGCAACTTCCTGTGCTGAACAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGCGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCTGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACGTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATCGTAAATTATCCACATCACAAACATACAAATCAAAAATCAAATCAGTAGAAAACAACCAAAGACCTGTGTTGCCTGAAAATCTAGCGGTGGTGTGCAATGGCTTGAAAGGAATATACTTTCCAAAGCTTCATTTAGTTTTGTGCAAGTGTAGCACCTGTGGGTCAAAAAAGCAGGCATTGGCTGAATGGGAACGGCATACAGGTTGTACAGCCAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCACGGAACACAATCCCCAAGCTGGAATTTCCATGAAGTTAAGTCAGAAACAGGTGTTTTCCTTTTTGCAAGAAAAATATGAACCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGGTTTGCAGATGGGTAGAAGATTGGGAAGATAACAAGATTATTATATGTAACAGATGCCAAGTTGCTGTTCACCAAGAGTGCTATGGTGCAAAGAATCTCCAAGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGTGCTTGGTTCCGGCCTGAAGTTGTTTTCCGAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTGCTCCTAGTTCCTTTTTGAAGACTTGTGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAAGGATGGGATATAGCATGGCATTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACGCAGACGCTAATATATTGTGCAGTTCACAGGATCCCAAATCCAGATTCAGTAATGGTTGTGCATACCCCTCTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCTCAAGGGACGCTTTAGAGGATCAAAGCTTATTTCATCAAATAACTTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCCGCCAAGTGTCGTGTTTACAAAAGGCCTCCCAATAAGAAGGATGATGCACCGATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCCGGGGTGTTTTCTTCATTTAAGGAACGCCTTCACCATTTACAGAAAACGGAAAATTGTAGAGTCTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGTCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGTGAACAGTTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGATGCAACTGATAAGGGCAATATTGCACGTCTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGGGAGATCAGGAGAGCAGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATACAGATGAGCGAGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG

Protein sequence

>MsaT040894.1

MKSGIQNLKRCSKLEEESPSQIQKKPKLNNAFYSVRDGEIHSNSASTDLNIVAENAPPLSRSSRGRVKMLPSKFKDSVLLGTQKKKKKSQQIKRSKLGFEGENSDIGIRFVNKGKENKCDLKKAIDNGFDEFDYEKHAKSFKSIKKTVKGSRMLLVKAESENGFDEKGKKGKEIFKLVDFHLGDIVWAKCGKTFPAWPAVVIDPILQAPESVLRRCVPDAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGHTRLYKTKESDFHKAMEEAMLADNGILDPHYRAEQIVEGATSCAEQEYHCQGQDTISCYGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCKGKSDRKLSTSQTYKSKIKSVENNQRPVLPENLAVVCNGLKGIYFPKLHLVLCKCSTCGSKKQALAEWERHTGCTAKKWKHSVKVEGTMQPLIKWITEHNPQAGISMKLSQKQVFSFLQEKYEPVYAKWTTERCAVCRWVEDWEDNKIIICNRCQVAVHQECYGAKNLQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIAPSSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMALRSTVKKGTQITQTLIYCAVHRIPNPDSVMVVHTPLGVFSPRTSLQNLKGRFRGSKLISSNNLELLEPSTSEHYEVEPLSAAKCRVYKRPPNKKDDAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDERDELKVPCHCKAPNCRKFMN*