AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040907


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040907 MtrunA17_Chr7g0275771 90.835 982 30 3 1 973 1 931 0.0 1830
MsaG040907 MtrunA17_Chr1g0147021 51.792 558 221 7 112 663 850 1365 0.0 582
MsaG040907 MtrunA17_Chr1g0147021 74.510 153 39 0 816 968 1545 1697 8.14e-70 254
MsaG040907 MtrunA17_Chr1g0211711 47.895 570 251 13 128 681 339 878 3.48e-158 493
MsaG040907 MtrunA17_Chr1g0211711 68.243 148 47 0 819 966 901 1048 4.80e-60 223
MsaG040907 MtrunA17_Chr1g0211661 44.038 629 318 11 47 668 152 753 1.15e-148 463
MsaG040907 MtrunA17_Chr1g0211661 66.667 93 31 0 815 907 771 863 1.78e-33 139
MsaG040907 MtrunA17_Chr5g0426961 42.088 613 314 10 58 663 86 664 5.02e-142 444
MsaG040907 MtrunA17_Chr5g0426961 65.563 151 52 0 819 969 685 835 2.01e-59 219
MsaG040907 MtrunA17_Chr1g0211691 43.847 577 282 12 128 687 338 889 3.09e-139 441
MsaG040907 MtrunA17_Chr1g0183311 42.439 615 309 14 89 688 106 690 1.44e-138 437
MsaG040907 MtrunA17_Chr1g0183311 67.568 148 48 0 819 966 732 879 2.33e-60 222
MsaG040907 MtrunA17_Chr1g0192011 39.515 577 289 12 119 684 254 781 2.33e-132 424
MsaG040907 MtrunA17_Chr1g0192011 50.909 165 74 2 806 970 807 964 5.70e-46 179
MsaG040907 MtrunA17_Chr4g0075261 41.252 543 265 11 132 670 168 660 9.04e-129 410
MsaG040907 MtrunA17_Chr4g0075261 68.212 151 48 0 818 968 716 866 8.65e-62 226
MsaG040907 MtrunA17_Chr2g0289121 40.525 533 267 11 132 661 156 641 1.52e-115 374
MsaG040907 MtrunA17_Chr2g0289121 65.101 149 52 0 820 968 673 821 8.04e-56 208
MsaG040907 MtrunA17_Chr5g0420361 41.176 493 252 15 196 681 149 610 2.39e-99 330
MsaG040907 MtrunA17_Chr5g0420361 50.870 230 100 6 733 955 561 784 1.16e-54 204
MsaG040907 MtrunA17_Chr2g0289091 41.844 423 214 8 518 931 21 420 1.18e-94 306
MsaG040907 MtrunA17_Chr5g0448301 43.925 428 199 10 241 663 153 544 1.21e-92 307
MsaG040907 MtrunA17_Chr5g0448301 56.164 73 31 1 807 879 560 631 3.04e-18 89.7
MsaG040907 MtrunA17_Chr2g0281051 34.444 540 299 13 132 650 207 712 1.99e-87 301
MsaG040907 MtrunA17_Chr2g0281051 54.730 148 67 0 822 969 810 957 2.44e-50 192
MsaG040907 MtrunA17_Chr6g0472441 38.445 476 235 16 210 672 99 529 9.20e-80 275
MsaG040907 MtrunA17_Chr6g0472441 66.667 135 45 0 816 950 567 701 1.28e-51 194
MsaG040907 MtrunA17_Chr2g0289031 52.995 217 102 0 445 661 9 225 9.72e-70 237
MsaG040907 MtrunA17_Chr2g0289031 62.667 150 56 0 820 969 247 396 6.99e-56 199
MsaG040907 MtrunA17_Chr4g0048531 43.643 291 158 3 361 650 727 1012 1.84e-65 240
MsaG040907 MtrunA17_Chr4g0048531 55.333 150 66 1 820 969 1131 1279 1.50e-50 194
MsaG040907 MtrunA17_Chr4g0048531 33.852 257 144 8 132 378 260 500 1.79e-30 130
MsaG040907 MtrunA17_Chr8g0361381 51.852 189 85 2 440 628 26 208 3.06e-60 204
MsaG040907 MtrunA17_Chr1g0211701 64.103 117 42 0 856 972 5 121 3.45e-50 174
MsaG040907 MtrunA17_Chr7g0231061 50.943 159 78 0 505 663 10 168 1.34e-42 154
MsaG040907 MtrunA17_Chr2g0289041 37.557 221 117 6 154 371 2 204 2.09e-38 142
MsaG040907 MtrunA17_Chr8g0361391 68.182 88 27 1 820 907 49 135 2.23e-34 129
MsaG040907 MtrunA17_Chr8g0364421 33.852 257 129 7 236 492 3 218 5.84e-34 130
MsaG040907 MtrunA17_Chr8g0340381 62.069 87 29 2 541 627 36 118 1.34e-27 110
MsaG040907 MtrunA17_Chr8g0364411 39.640 111 63 2 132 238 33 143 2.25e-18 83.2
MsaG040907 MtrunA17_Chr1g0211671 56.897 58 25 0 910 967 17 74 5.60e-16 75.5
MsaG040907 MtrunA17_Chr2g0289101 28.767 146 88 4 260 405 8 137 3.74e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040907 AT4G00990.1 50.885 847 319 15 132 972 80 835 0.0 827
MsaG040907 AT4G00990.3 49.241 790 304 15 132 915 80 778 0.0 740
MsaG040907 AT4G00990.2 49.490 784 299 15 132 909 80 772 0.0 739
MsaG040907 AT1G11950.2 43.670 545 277 8 121 662 182 699 1.73e-149 463
MsaG040907 AT1G11950.2 66.250 80 27 0 820 899 722 801 4.66e-27 119
MsaG040907 AT1G11950.1 43.670 545 277 8 121 662 182 699 7.80e-149 464
MsaG040907 AT1G11950.1 66.887 151 50 0 820 970 722 872 6.65e-61 224
MsaG040907 AT1G11950.3 43.670 545 277 8 121 662 182 699 7.80e-149 464
MsaG040907 AT1G11950.3 66.887 151 50 0 820 970 722 872 6.65e-61 224
MsaG040907 AT1G62310.1 42.908 557 287 10 102 654 180 709 7.71e-146 456
MsaG040907 AT1G62310.1 69.853 136 41 0 820 955 748 883 2.53e-56 211
MsaG040907 AT1G09060.2 37.958 519 262 11 127 636 199 666 4.47e-108 357
MsaG040907 AT1G09060.2 55.629 151 63 2 820 970 748 894 3.18e-44 174
MsaG040907 AT1G09060.1 37.958 519 262 11 127 636 199 666 4.47e-108 357
MsaG040907 AT1G09060.1 55.629 151 63 2 820 970 748 894 3.18e-44 174
MsaG040907 AT1G09060.4 37.958 519 262 11 127 636 213 680 5.72e-108 357
MsaG040907 AT1G09060.4 55.629 151 63 2 820 970 762 908 3.46e-44 174
MsaG040907 AT1G09060.3 37.958 519 262 11 127 636 213 680 5.72e-108 357
MsaG040907 AT1G09060.3 55.629 151 63 2 820 970 762 908 3.46e-44 174
MsaG040907 AT3G07610.1 48.254 315 146 5 353 663 417 718 2.53e-85 296
MsaG040907 AT3G07610.1 64.138 145 52 0 821 965 746 890 7.26e-55 207
MsaG040907 AT3G07610.1 43.114 167 88 3 131 293 154 317 1.02e-33 140
MsaG040907 AT3G07610.2 49.291 282 129 4 353 630 417 688 3.77e-79 274
MsaG040907 AT3G07610.2 43.114 167 88 3 131 293 154 317 4.16e-33 138
MsaG040907 AT3G07610.3 48.123 293 137 5 353 641 417 698 9.16e-78 275
MsaG040907 AT3G07610.3 64.138 145 52 0 821 965 768 912 1.13e-54 207
MsaG040907 AT3G07610.3 43.114 167 88 3 131 293 154 317 1.40e-33 140
MsaG040907 AT4G21430.1 34.021 291 180 5 363 650 412 693 1.56e-44 174
MsaG040907 AT4G21430.1 45.395 152 82 1 821 972 768 918 9.90e-40 159
MsaG040907 AT4G21430.1 30.070 143 94 3 124 261 219 360 8.20e-11 66.6

Find 231 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATTTCAACATTTC+TGG 0.120735 7:+105048840 None:intergenic
GTTGATGCTAAGCTGGTTTC+AGG 0.162010 7:+105039472 None:intergenic
CATCAAACTTTCACCCTTCT+TGG 0.166875 7:+105050711 None:intergenic
CATCACGTTACCCCTTATTT+TGG 0.198489 7:+105050161 None:intergenic
TCCATAAGCAATATATGTTT+TGG 0.206014 7:+105048662 None:intergenic
GACGCATTTACAAAGCTAAT+TGG 0.212539 7:-105049404 MsaT040907.1:CDS
CCTTGCTGCACTTCCGTATA+TGG 0.220636 7:-105048763 MsaT040907.1:CDS
TCACTATTAGCTTTCCATTC+TGG 0.221053 7:+105049489 None:intergenic
AAATTTAAAAGACCTGATTT+TGG 0.227869 7:+105048729 None:intergenic
TAGGAGAAGGAAGGTGATTT+TGG 0.233228 7:-105051452 MsaT040907.1:CDS
GCACGCTTCGCCACCGCTTT+AGG 0.248072 7:+105051711 None:intergenic
CCCAAAACATATATTGCTTA+TGG 0.252702 7:-105048663 MsaT040907.1:CDS
CTGTCCTTGGTGGTGCTGTT+TGG 0.282014 7:-105039321 MsaT040907.1:CDS
TAGAGATTGAAACCAAAATA+AGG 0.287207 7:-105050173 MsaT040907.1:CDS
TGTCCTTGGTGGTGCTGTTT+GGG 0.300425 7:-105039320 MsaT040907.1:CDS
TGCCTCCAATTTGTCCTCCT+TGG 0.307913 7:+105038010 None:intergenic
CACTATTAGCTTTCCATTCT+GGG 0.308619 7:+105049490 None:intergenic
CCTTGGCCCTGTGGTACTTT+GGG 0.311027 7:+105038027 None:intergenic
CCAACTTAGACCAGATGTTT+TGG 0.327801 7:+105049116 None:intergenic
TGGCTCGTTGAAACCAGATT+TGG 0.338002 7:-105048688 MsaT040907.1:CDS
TCAAGTACTCAATTAACTTT+GGG 0.338039 7:+105039275 None:intergenic
CTCAAGTACTCAATTAACTT+TGG 0.338571 7:+105039274 None:intergenic
AAAATGTTGAAGAATGTTTA+CGG 0.341969 7:-105038073 MsaT040907.1:CDS
CTCAGAAAGGGCTGCCAACC+TGG 0.342470 7:-105049672 MsaT040907.1:CDS
AATTGCAATACATCCATATA+TGG 0.343840 7:-105049759 MsaT040907.1:CDS
TCCTTGGCCCTGTGGTACTT+TGG 0.345298 7:+105038026 None:intergenic
CCGCAACCTCCACGCTGCTT+TGG 0.346427 7:+105049447 None:intergenic
GATTCTTCGGACATAGATAA+TGG 0.349729 7:-105039352 MsaT040907.1:CDS
AATGCTGCCTTCCTGACTTC+AGG 0.351533 7:+105049264 None:intergenic
CAGGGCCAAGGAGGACAAAT+TGG 0.356851 7:-105038015 MsaT040907.1:CDS
AAATGTTGAAATTGAAAGAT+TGG 0.360364 7:-105048836 MsaT040907.1:CDS
CAGCACTACTTACAGCATAA+AGG 0.361022 7:+105037718 None:intergenic
TTAACTTTGGGACATCTTGC+CGG 0.362970 7:+105039287 None:intergenic
GCTACGGTAAAATCCATATA+TGG 0.365215 7:+105049746 None:intergenic
TTCCTCTTTCAACTTCGCTT+TGG 0.365483 7:+105049053 None:intergenic
TGCCAGCTAAACTTGTTAGA+AGG 0.368652 7:-105049297 MsaT040907.1:CDS
GGATCAGTGTAGTCCATATA+CGG 0.368658 7:+105048750 None:intergenic
AGTCAGGAAGGCAGCATTCC+GGG 0.369228 7:-105049259 MsaT040907.1:CDS
TTCTCTTCTCACCCGTAGTT+TGG 0.380702 7:+105050991 None:intergenic
AGAGATTGAAACCAAAATAA+GGG 0.383019 7:-105050172 MsaT040907.1:CDS
CTTGGCTACTTTGTGTAATC+CGG 0.385325 7:+105039701 None:intergenic
TCATATGAGCAACCGGTGTT+GGG 0.387584 7:+105049720 None:intergenic
TGCCTTAGTTGATGCTAAGC+TGG 0.395664 7:+105039465 None:intergenic
CTAGTTCCAAGCTCTGTTCC+CGG 0.395888 7:+105050193 None:intergenic
TGGAGGGCCCTCAGAGAAAC+AGG 0.401355 7:-105049078 MsaT040907.1:CDS
TGTGGTTGTGAGAAATGTTT+TGG 0.402232 7:-105049139 MsaT040907.1:CDS
ATTTATGCTTTCTCTCTGCC+AGG 0.402834 7:+105039849 None:intergenic
CTCCCTTCATCCAGTGCCTC+TGG 0.403927 7:+105049166 None:intergenic
TGACACTGGCGTCTATTTCT+CGG 0.405325 7:+105050274 None:intergenic
CAACCTCCACGCTGCTTTGG+AGG 0.406325 7:+105049450 None:intergenic
AGCACTACTTACAGCATAAA+GGG 0.407434 7:+105037719 None:intergenic
TCAGATATGTCAAGGGCGTT+TGG 0.411554 7:+105049207 None:intergenic
GAAGCTTCAGCCAATGTTGA+TGG 0.417316 7:-105039778 MsaT040907.1:CDS
AAGTCAGGAAGGCAGCATTC+CGG 0.417630 7:-105049260 MsaT040907.1:CDS
ATTCTTCGGACATAGATAAT+GGG 0.417707 7:-105039351 MsaT040907.1:CDS
GGGACTAATGGATGTGTATA+AGG 0.420271 7:-105051426 MsaT040907.1:CDS
TAACTGCAAAGCTTGCTTAC+GGG 0.421761 7:-105050412 MsaT040907.1:CDS
CCAAAACATCTGGTCTAAGT+TGG 0.422615 7:-105049116 MsaT040907.1:CDS
CACGTTCTCAAATTCCTCTC+GGG 0.423212 7:+105050458 None:intergenic
ATCATATGAGCAACCGGTGT+TGG 0.424828 7:+105049719 None:intergenic
ATTGAACCAATCTTACTCAT+TGG 0.425250 7:+105037668 None:intergenic
GGCTCGTTGAAACCAGATTT+GGG 0.425618 7:-105048687 MsaT040907.1:CDS
ACAAGTCAAAGAACTGACTA+TGG 0.436135 7:-105037691 MsaT040907.1:CDS
TTGATTGCTTGGATTGGTGT+GGG 0.436266 7:-105049011 MsaT040907.1:CDS
GTTACGAATGCATTGAGAAC+TGG 0.440992 7:-105050618 MsaT040907.1:intron
TAACTTTCCACACCAGTCTT+CGG 0.444209 7:+105039654 None:intergenic
AATAGAGTCTGATCATGAAT+AGG 0.444777 7:+105039114 None:intergenic
CATGTACTAACTTGATGAAT+CGG 0.446841 7:+105051546 None:intergenic
TTCTGTGACCAAACTGCACT+TGG 0.447540 7:-105048613 MsaT040907.1:CDS
ACGCATTTACAAAGCTAATT+GGG 0.448708 7:-105049403 MsaT040907.1:CDS
AGGTTGAACATGTTCCAGTT+TGG 0.449335 7:+105039492 None:intergenic
CATTGATCAGTCTTGTATGA+AGG 0.450066 7:-105038120 MsaT040907.1:intron
TGTTAAGGCTGTTGATTGCT+TGG 0.454355 7:-105049022 MsaT040907.1:CDS
TTCTAACAAGTTTAGCTGGC+AGG 0.459337 7:+105049299 None:intergenic
CAACCTGGAGGCATGGAGGC+TGG 0.460136 7:-105049657 MsaT040907.1:CDS
GTTGATTGCTTGGATTGGTG+TGG 0.461006 7:-105049012 MsaT040907.1:CDS
TTCCTTCTAACAAGTTTAGC+TGG 0.463979 7:+105049295 None:intergenic
GGGGCTGAGGCTGTCCTTGG+TGG 0.464118 7:-105039331 MsaT040907.1:CDS
CGGTGGATATGCCTCAGAAC+TGG 0.464151 7:+105050213 None:intergenic
TTTCTTCTTCTTCTTTCTCG+TGG 0.466094 7:+105051569 None:intergenic
AGGCAGAGAATGGAGTTAAC+CGG 0.467392 7:-105039720 MsaT040907.1:CDS
TTTGGAACCTGTTTCTCTGA+GGG 0.469787 7:+105049071 None:intergenic
AGACACATCCAAGTGCAGTT+TGG 0.473593 7:+105048605 None:intergenic
AATTGAAGATACCAAACAAC+TGG 0.474075 7:-105051384 MsaT040907.1:intron
CTTCCAGAGGCACTGGATGA+AGG 0.474463 7:-105049169 MsaT040907.1:CDS
AGATAAAGAAAGACAGAATG+AGG 0.477798 7:-105039441 MsaT040907.1:CDS
AATGGGGCTGAGGCTGTCCT+TGG 0.479752 7:-105039334 MsaT040907.1:CDS
AGGCTGTTGATTGCTTGGAT+TGG 0.480261 7:-105049017 MsaT040907.1:CDS
GACTACACTGATCCAAAATC+AGG 0.480455 7:-105048741 MsaT040907.1:CDS
AGAAAGCATAAATAAATTGA+AGG 0.480525 7:-105039839 MsaT040907.1:CDS
CAAAACATCTGGTCTAAGTT+GGG 0.481497 7:-105049115 MsaT040907.1:CDS
CCAAAGCAGCGTGGAGGTTG+CGG 0.481572 7:-105049447 MsaT040907.1:CDS
AGGCATGGGGAGAGATTCTT+CGG 0.482741 7:-105039365 MsaT040907.1:CDS
TTTGCTAGTAAACTTCCTGC+TGG 0.483596 7:-105048708 MsaT040907.1:CDS
TATCCACCGGGAACAGAGCT+TGG 0.485075 7:-105050199 MsaT040907.1:CDS
ATGCTACTCACTGAATCAAC+AGG 0.485399 7:+105039214 None:intergenic
TGTTCTCTCCCTTCCCAGAA+TGG 0.488292 7:-105049503 MsaT040907.1:CDS
AACCGGTGTTGGGGCAGCTA+CGG 0.490680 7:+105049730 None:intergenic
AGCATTGGACCATGATCAAA+AGG 0.491180 7:-105039740 MsaT040907.1:CDS
AGAGGAAACACAAAGTGTTA+AGG 0.491693 7:-105049037 MsaT040907.1:CDS
GTAACTGCAAAGCTTGCTTA+CGG 0.492778 7:-105050413 MsaT040907.1:CDS
ACAGAGATCATATGAGCAAC+CGG 0.493700 7:+105049713 None:intergenic
GCGAAGCGTGCCAACGTCGC+CGG 0.497824 7:-105051699 MsaT040907.1:CDS
ACACGTTCTCAAATTCCTCT+CGG 0.497938 7:+105050457 None:intergenic
GGGCTGCCAACCTGGAGGCA+TGG 0.498628 7:-105049664 MsaT040907.1:CDS
AAATTACACACCACTGGATG+TGG 0.499086 7:-105049343 MsaT040907.1:CDS
TCAAGCACTTCCAGAGGCAC+TGG 0.499542 7:-105049176 MsaT040907.1:CDS
ATGAAATGCACGGATCTACT+TGG 0.501006 7:+105039683 None:intergenic
TACATCGTAAAAGATATGAC+TGG 0.502695 7:-105049569 MsaT040907.1:CDS
AAAATATAAATCTAAAGCAT+TGG 0.504785 7:-105039755 MsaT040907.1:CDS
GAAGAGCGCTTGCCTAGGCA+TGG 0.506411 7:-105048795 MsaT040907.1:CDS
AAGATGCAGAGTCTAACAAT+AGG 0.506744 7:-105051656 MsaT040907.1:CDS
GTGGTTCTCTCCGGCGACGT+TGG 0.507803 7:+105051689 None:intergenic
CATGATCAAAAGGCAGAGAA+TGG 0.507892 7:-105039730 MsaT040907.1:CDS
CTTTGGAACCTGTTTCTCTG+AGG 0.509010 7:+105049070 None:intergenic
CTTACAGAAATGTTGCTGTA+AGG 0.510181 7:-105039582 MsaT040907.1:CDS
ACGGGAGTTTCCTGTGCTGA+TGG 0.512922 7:-105050394 MsaT040907.1:intron
GGATATGCCTCAGAACTGGC+AGG 0.514718 7:+105050217 None:intergenic
ACTTGATGAGGACATCCTGC+TGG 0.516888 7:+105038916 None:intergenic
ACAAAACAATGTGATGATAA+CGG 0.517829 7:-105039619 MsaT040907.1:CDS
TTAGCTTTCCATTCTGGGAA+GGG 0.520236 7:+105049495 None:intergenic
CCACGCTGCTTTGGAGGACA+TGG 0.521105 7:+105049456 None:intergenic
ATGTTCCAGTTTGGAAGACC+TGG 0.521654 7:+105039501 None:intergenic
CAGCCTCCATGCCTCCAGGT+TGG 0.523236 7:+105049658 None:intergenic
AGATCGGAGTCGGAGCTGAA+TGG 0.523502 7:-105051597 MsaT040907.1:CDS
TGCTGTCAAGAGCTCAGAAA+GGG 0.524593 7:-105049684 MsaT040907.1:CDS
CAATGTGATGATAACGGAAA+GGG 0.534593 7:-105039613 MsaT040907.1:CDS
ATGAAAGTGAACGCTTGTAC+TGG 0.535947 7:-105050020 MsaT040907.1:intron
CACTAGAAATTACACACCAC+TGG 0.535964 7:-105049349 MsaT040907.1:CDS
TTCCAGAGGCACTGGATGAA+GGG 0.536895 7:-105049168 MsaT040907.1:CDS
GATAGAGTCAAAACAAGGCA+TGG 0.538868 7:-105039380 MsaT040907.1:CDS
AAGCATAAATAAATTGAAGG+AGG 0.541585 7:-105039836 MsaT040907.1:CDS
ATTAGCTTTCCATTCTGGGA+AGG 0.541639 7:+105049494 None:intergenic
CTGTTTGGGACATCTTCCGC+CGG 0.542841 7:-105039306 MsaT040907.1:CDS
AGCATAAATAAATTGAAGGA+GGG 0.543036 7:-105039835 MsaT040907.1:CDS
GTTCCAGCCTCCATGCCTCC+AGG 0.544115 7:+105049654 None:intergenic
TCTTCAAAAGAGGTGGATGA+AGG 0.544342 7:+105048813 None:intergenic
TAAATGAGAGGCATAAGAAA+CGG 0.545002 7:-105039089 MsaT040907.1:CDS
GTTTACTCCCAAAGTACCAC+AGG 0.545087 7:-105038034 MsaT040907.1:CDS
TCTGGTTTCAACGAGCCAGC+AGG 0.545236 7:+105048693 None:intergenic
CAGTTCTGAGGCATATCCAC+CGG 0.547208 7:-105050212 MsaT040907.1:CDS
CTCCGATCTGTTACAGAGAT+CGG 0.548830 7:+105051611 None:intergenic
GTTGGGAACCAATGGTTATG+TGG 0.549955 7:-105049098 MsaT040907.1:CDS
TCATCAAGTGAGAAATAGAC+AGG 0.550140 7:-105038902 MsaT040907.1:intron
TGGTCTAAGTTGGGAACCAA+TGG 0.552684 7:-105049106 MsaT040907.1:CDS
ATAGAGTCAAAACAAGGCAT+GGG 0.553291 7:-105039379 MsaT040907.1:CDS
GTCGAATGCATAAAGATAAG+TGG 0.555220 7:-105048863 MsaT040907.1:CDS
TTTATGCTTTCTCTCTGCCA+GGG 0.556277 7:+105039850 None:intergenic
AAAACATTTCTCACAACCAC+AGG 0.556803 7:+105049141 None:intergenic
TTCAATTTGTAGGAGAAGGA+AGG 0.557963 7:-105051461 MsaT040907.1:intron
TTTCATCAATATCCGAAGAC+TGG 0.559278 7:-105039666 MsaT040907.1:CDS
CACCACTCTTATCATTCCGC+TGG 0.561657 7:+105050677 None:intergenic
CAGAGTCTAACAATAGGAAG+AGG 0.562689 7:-105051650 MsaT040907.1:CDS
GAATGGAAAGCTAATAGTGA+TGG 0.562940 7:-105049486 MsaT040907.1:CDS
ATTTGTCCTCCTTGGCCCTG+TGG 0.564451 7:+105038018 None:intergenic
GATAAAGAAAGACAGAATGA+GGG 0.569233 7:-105039440 MsaT040907.1:CDS
TACCGTAGCTGCCCCAACAC+CGG 0.571816 7:-105049732 MsaT040907.1:CDS
GTGCTGTCAAGAGCTCAGAA+AGG 0.573335 7:-105049685 MsaT040907.1:CDS
AGGCAAGCGCTCTTCAAAAG+AGG 0.574024 7:+105048803 None:intergenic
AGTTATCTTTACTGTCATCC+CGG 0.575632 7:+105049241 None:intergenic
AGGGCCCTCCACATAACCAT+TGG 0.576182 7:+105049090 None:intergenic
TTGGATTTGCAGGAAAAGGA+AGG 0.578185 7:-105051058 MsaT040907.1:intron
GGACATAGATAATGGGGCTG+AGG 0.579587 7:-105039344 MsaT040907.1:CDS
CATATGAGCAACCGGTGTTG+GGG 0.581272 7:+105049721 None:intergenic
TTACAATTACCCAGACAAAA+CGG 0.582664 7:+105050432 None:intergenic
TTCCAAAGCGAAGTTGAAAG+AGG 0.582695 7:-105049055 MsaT040907.1:CDS
GCCTGAGAATGAAAACTAGT+AGG 0.583092 7:+105049531 None:intergenic
AGGAATTCAGCACCATGCCT+AGG 0.583338 7:+105048783 None:intergenic
AACCAGCTTAGCATCAACTA+AGG 0.588961 7:-105039467 MsaT040907.1:CDS
CCCAAGATAGAGTCAAAACA+AGG 0.590200 7:-105039385 MsaT040907.1:CDS
GGCCAAGGAGGACAAATTGG+AGG 0.592274 7:-105038012 MsaT040907.1:intron
ATGACATCTACCATCAGCAC+AGG 0.592506 7:+105050384 None:intergenic
CACCGATCTCTGTAACAGAT+CGG 0.592544 7:-105051613 MsaT040907.1:CDS
TCTCATCATCAGATATGTCA+AGG 0.595439 7:+105049199 None:intergenic
AGACTCTATTCTTAAATGAG+AGG 0.596003 7:-105039101 MsaT040907.1:CDS
ACAATGTGATGATAACGGAA+AGG 0.598284 7:-105039614 MsaT040907.1:CDS
TGTCTATTTCTCACTTGATG+AGG 0.602426 7:+105038904 None:intergenic
GGAACCAATGGTTATGTGGA+GGG 0.602890 7:-105049094 MsaT040907.1:CDS
GCTTCGCCACCGCTTTAGGA+CGG 0.604737 7:+105051715 None:intergenic
GAGTTGAAGATACCAAACTA+CGG 0.605127 7:-105051003 MsaT040907.1:CDS
GAGATTGAAACCAAAATAAG+GGG 0.605718 7:-105050171 MsaT040907.1:intron
CTGCCAACCTGGAGGCATGG+AGG 0.608369 7:-105049661 MsaT040907.1:CDS
AGGTGTTGCTCAAAAGTCCA+TGG 0.608381 7:+105038958 None:intergenic
TTCCGTCGACCGTCCTAAAG+CGG 0.608497 7:-105051724 MsaT040907.1:CDS
CAAGCGCTCTTCAAAAGAGG+TGG 0.609569 7:+105048806 None:intergenic
CCCAAAGTACCACAGGGCCA+AGG 0.611923 7:-105038027 MsaT040907.1:CDS
AATCAATCCTGAAGTCAGGA+AGG 0.613548 7:-105049271 MsaT040907.1:CDS
AAAACTACTAAATAATGCTG+AGG 0.613650 7:-105049376 MsaT040907.1:CDS
CTAAAGCCCTGCCAGTTCTG+AGG 0.614494 7:-105050224 MsaT040907.1:CDS
ACAAGGTGAATATAGCTCCC+TGG 0.616082 7:-105039867 MsaT040907.1:CDS
CGTCGACCGTCCTAAAGCGG+TGG 0.619111 7:-105051721 MsaT040907.1:CDS
AAAGGAAGGTAGCTGTAACA+AGG 0.620730 7:-105051044 MsaT040907.1:CDS
GTTTGGTCACAGAATCTCCT+CGG 0.620832 7:+105048622 None:intergenic
TCTATGCAGACGTTGAACCA+TGG 0.621665 7:-105038975 MsaT040907.1:intron
ACATCGTAAAAGATATGACT+GGG 0.621776 7:-105049568 MsaT040907.1:CDS
TCTCTGTAACAGATCGGAGT+CGG 0.622689 7:-105051607 MsaT040907.1:CDS
TGATTGCTTGGATTGGTGTG+GGG 0.624612 7:-105049010 MsaT040907.1:intron
GGGAACCAATGGTTATGTGG+AGG 0.624618 7:-105049095 MsaT040907.1:CDS
AGTTGAAGATACCAAACTAC+GGG 0.625645 7:-105051002 MsaT040907.1:intron
TCAATATCCGAAGACTGGTG+TGG 0.626913 7:-105039661 MsaT040907.1:CDS
TCGGATATTGATGAAATGCA+CGG 0.627144 7:+105039673 None:intergenic
CACCGCTTTAGGACGGTCGA+CGG 0.628927 7:+105051722 None:intergenic
AGTTCTGAGGCATATCCACC+GGG 0.638449 7:-105050211 MsaT040907.1:CDS
TCAGTAATATCCACATCCAG+TGG 0.640601 7:+105049333 None:intergenic
CTCATCATCAGATATGTCAA+GGG 0.643129 7:+105049200 None:intergenic
TTCTTCGGACATAGATAATG+GGG 0.645726 7:-105039350 MsaT040907.1:CDS
GATATGCCTCAGAACTGGCA+GGG 0.647810 7:+105050218 None:intergenic
CAGCCGCTGTAATTTGACAC+TGG 0.648961 7:+105050260 None:intergenic
TGATGTGTCATCAGTGCCAG+CGG 0.652912 7:-105050693 MsaT040907.1:CDS
GTACTTGAGAAAGCACAAGA+AGG 0.657473 7:-105039260 MsaT040907.1:CDS
AGAAAGGGCTGCCAACCTGG+AGG 0.659756 7:-105049669 MsaT040907.1:CDS
GGTGTGGAAAGTTAGAATCA+CGG 0.662993 7:-105039645 MsaT040907.1:CDS
CCATATACGGAAGTGCAGCA+AGG 0.667187 7:+105048763 None:intergenic
TAGAGTCAAAACAAGGCATG+GGG 0.670533 7:-105039378 MsaT040907.1:CDS
CTGGATGAAGGGAGAACCTG+TGG 0.674541 7:-105049157 MsaT040907.1:CDS
TTGACATTAATCAGGTACCC+AGG 0.674787 7:-105050486 MsaT040907.1:intron
GTTCCAAGCTCTGTTCCCGG+TGG 0.675496 7:+105050196 None:intergenic
GAATGAAAACAGCCTCACCA+AGG 0.682441 7:+105038938 None:intergenic
TGCTGTAAGGAACTCCTCTG+TGG 0.685308 7:-105039569 MsaT040907.1:CDS
TGTCCTCCAAAGCAGCGTGG+AGG 0.692688 7:-105049453 MsaT040907.1:CDS
AAAGTACCACAGGGCCAAGG+AGG 0.693788 7:-105038024 MsaT040907.1:CDS
ATGAGATCAAGCACTTCCAG+AGG 0.695160 7:-105049182 MsaT040907.1:CDS
TGCCAGCGGAATGATAAGAG+TGG 0.697971 7:-105050679 MsaT040907.1:CDS
TGTGCTGACACACACAAACA+AGG 0.699062 7:-105039884 MsaT040907.1:CDS
TGTCCCAAACAGCACCACCA+AGG 0.699263 7:+105039317 None:intergenic
GCACTTGGATGTGTCTGATG+CGG 0.702546 7:-105048598 MsaT040907.1:intron
TTTACTCCCAAAGTACCACA+GGG 0.711169 7:-105038033 MsaT040907.1:CDS
CCATGTCCTCCAAAGCAGCG+TGG 0.720281 7:-105049456 MsaT040907.1:CDS
ACTTTGGGACATCTTGCCGG+CGG 0.729005 7:+105039290 None:intergenic
ACTAACACTATCTTCCACAG+AGG 0.740375 7:+105039555 None:intergenic
ACGCCAGTGTCAAATTACAG+CGG 0.742800 7:-105050263 MsaT040907.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 105037680 105051757 105037680 ID=MsaG040907
Chr7 mRNA 105037680 105051757 105037680 ID=MsaT040907.1;Parent=MsaG040907
Chr7 exon 105037680 105037754 105037680 ID=MsaT040907.1.exon14;Parent=MsaT040907.1
Chr7 CDS 105037680 105037754 105037680 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105038013 105038132 105038013 ID=MsaT040907.1.exon13;Parent=MsaT040907.1
Chr7 CDS 105038013 105038132 105038013 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105038903 105038988 105038903 ID=MsaT040907.1.exon12;Parent=MsaT040907.1
Chr7 CDS 105038903 105038988 105038903 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105039073 105039145 105039073 ID=MsaT040907.1.exon11;Parent=MsaT040907.1
Chr7 CDS 105039073 105039145 105039073 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105039225 105039911 105039225 ID=MsaT040907.1.exon10;Parent=MsaT040907.1
Chr7 CDS 105039225 105039911 105039225 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105048599 105048928 105048599 ID=MsaT040907.1.exon9;Parent=MsaT040907.1
Chr7 CDS 105048599 105048928 105048599 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105049011 105049785 105049011 ID=MsaT040907.1.exon8;Parent=MsaT040907.1
Chr7 CDS 105049011 105049785 105049011 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105050021 105050084 105050021 ID=MsaT040907.1.exon7;Parent=MsaT040907.1
Chr7 CDS 105050021 105050084 105050021 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105050172 105050298 105050172 ID=MsaT040907.1.exon6;Parent=MsaT040907.1
Chr7 CDS 105050172 105050298 105050172 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105050395 105050494 105050395 ID=MsaT040907.1.exon5;Parent=MsaT040907.1
Chr7 CDS 105050395 105050494 105050395 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105050619 105050749 105050619 ID=MsaT040907.1.exon4;Parent=MsaT040907.1
Chr7 CDS 105050619 105050749 105050619 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105051003 105051068 105051003 ID=MsaT040907.1.exon3;Parent=MsaT040907.1
Chr7 CDS 105051003 105051068 105051003 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105051385 105051471 105051385 ID=MsaT040907.1.exon2;Parent=MsaT040907.1
Chr7 CDS 105051385 105051471 105051385 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Chr7 exon 105051557 105051757 105051557 ID=MsaT040907.1.exon1;Parent=MsaT040907.1
Chr7 CDS 105051557 105051757 105051557 ID=cds.MsaT040907.1;Parent=MsaT040907.1
Gene Sequence

>MsaT040907.1

ATGGACTCTTCTTCCGTCGACCGTCCTAAAGCGGTGGCGAAGCGTGCCAACGTCGCCGGAGAGAACCACAGCAAAATTGAAGATGCAGAGTCTAACAATAGGAAGAGGAAGATCGTCGCTGTCACCGATCTCTGTAACAGATCGGAGTCGGAGCTGAATGGAAACTCCACGAGAAAGAAGAAGAAGAAACCGATTCATCAAGAGAAGGAAGGTGATTTTGGCAAGGGACTAATGGATGTGTATAAGGTCAACAAAGCCAAAAATGGAATTGAAGATACCAAACAACTGGAAAAGGAAGGTAGCTGTAACAAGGTTAACAAAGCTAAAAATGGAGTTGAAGATACCAAACTACGGGGTATATCCAAAAAAGCCAAGAAGGGTGAAAGTTTGATGTGTCATCAGTGCCAGCGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAGCGCTATTGTTACGAATGCATTGAGAACTGGTACCCAGGAAAAACCCGAGAGGAATTTGAGAACGTGTGTCCGTTTTGTCTGGGTAATTGTAACTGCAAAGCTTGCTTACGGGAGTTTCCTGTGCTGATGGACCGAGAAATAGACGCCAGTGTCAAATTACAGCGGCTGCTGTACTTGCTATCTAAAGCCCTGCCAGTTCTGAGGCATATCCACCGGGAACAGAGCTTGGAACTAGAGATTGAAACCAAAATAAGGGGTAAGGAACTACAAGAAATTGACATAACAAGAACAAAGCTAGATGAAAGTGAACGCTTGTACTGTGACAATTGCAATACATCCATATATGGATTTTACCGTAGCTGCCCCAACACCGGTTGCTCATATGATCTCTGTCTCGTGTGCTGTCAAGAGCTCAGAAAGGGCTGCCAACCTGGAGGCATGGAGGCTGGAACGTCTCATGAAAAATTTGAAGAGATTTTTCACCATCACGGTTCAACAAAAAATCGGAGTAAAATACATCGTAAAAGATATGACTGGGAGAGCGAACTTGCACCTACTAGTTTTCATTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGCGGTACTGCATTACTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTACTAAATAATGCTGAGGATCTCACTAGAAATTACACACCACTGGATGTGGATATTACTGAAAAGTGTTCTTCCTGCCAGCTAAACTTGTTAGAAGGAAAAATCAATCCTGAAGTCAGGAAGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAACGCCCTTGACATATCTGATGATGAGATCAAGCACTTCCAGAGGCACTGGATGAAGGGAGAACCTGTGGTTGTGAGAAATGTTTTGGCCAAAACATCTGGTCTAAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTGAAAGAGGAAACACAAAGTGTTAAGGCTGTTGATTGCTTGGATTGGTGTGGGGTTGAAATTAATATACACCAATTTTTTCAAGGCTACGTAAAGGGTCGAATGCATAAAGATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCCACCTCTTTTGAAGAGCGCTTGCCTAGGCATGGTGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACCAAACTGCACTTGGATGTGTCTGATGCGGTGAATGTGCTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAAAGCATAAATAAATTGAAGGAGGGATACGATAAAGAAGACTATTCTGAACTTTATTGTGAAGCTTCAGCCAATGTTGATGGAAAATATAAATCTAAAGCATTGGACCATGATCAAAAGGCAGAGAATGGAGTTAACCGGATTACACAAAGTAGCCAAGTAGATCCGTGCATTTCATCAATATCCGAAGACTGGTGTGGAAAGTTAGAATCACGGAACACAAAACAATGTGATGATAACGGAAAGGGCTCTTGCACTTACAGAAATGTTGCTGTAAGGAACTCCTCTGTGGAAGATAGTGTTAGTAAAACATCATCTACCAAAGTTTTAGATTTTTCCAGGTCTTCCAAACTGGAACATGTTCAACCTGAAACCAGCTTAGCATCAACTAAGGCAGAGATAAAGAAAGACAGAATGAGGGTTGATTTTTCAGATGGTAATGTGTCTAGTGATCCCAAGATAGAGTCAAAACAAGGCATGGGGAGAGATTCTTCGGACATAGATAATGGGGCTGAGGCTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCAAAGTTAATTGAGTACTTGAGAAAGCACAAGAAGGAATTTCGTCATATCAACAATGAACCTGTTGATTCAGTTATTCATCCTATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACGGCTAAAAAAAGAATTTAACGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCTTGTATGAAGGTTGCGCTTGACTTTGTTTCTCCAGAAAATGTTGAAGAATGTTTACGGCTAACTGAAGAGTTTCGTTTACTCCCAAAGTACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTAAGTAGTGCTGTTAGACAAGTCAAAGAACTGACTATGGCCAATGAGTAA

Protein sequence

>MsaT040907.1

MDSSSVDRPKAVAKRANVAGENHSKIEDAESNNRKRKIVAVTDLCNRSESELNGNSTRKKKKKPIHQEKEGDFGKGLMDVYKVNKAKNGIEDTKQLEKEGSCNKVNKAKNGVEDTKLRGISKKAKKGESLMCHQCQRNDKSGVVFCSSCNRKRYCYECIENWYPGKTREEFENVCPFCLGNCNCKACLREFPVLMDREIDASVKLQRLLYLLSKALPVLRHIHREQSLELEIETKIRGKELQEIDITRTKLDESERLYCDNCNTSIYGFYRSCPNTGCSYDLCLVCCQELRKGCQPGGMEAGTSHEKFEEIFHHHGSTKNRSKIHRKRYDWESELAPTSFHSQADMFSPFPEWKANSDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITEKCSSCQLNLLEGKINPEVRKAAFRDDSKDNFLYSPNALDISDDEIKHFQRHWMKGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKAKLKEETQSVKAVDCLDWCGVEINIHQFFQGYVKGRMHKDKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHLDVSDAVNVLTHTNKVNIAPWQRESINKLKEGYDKEDYSELYCEASANVDGKYKSKALDHDQKAENGVNRITQSSQVDPCISSISEDWCGKLESRNTKQCDDNGKGSCTYRNVAVRNSSVEDSVSKTSSTKVLDFSRSSKLEHVQPETSLASTKAEIKKDRMRVDFSDGNVSSDPKIESKQGMGRDSSDIDNGAEAVLGGAVWDIFRRQDVPKLIEYLRKHKKEFRHINNEPVDSVIHPIHDQTLFLNERHKKRLKKEFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVEECLRLTEEFRLLPKYHRAKEDKLEVKKMTLYAVSSAVRQVKELTMANE*