AlfalfaGEDB | MsaG040911

M. sativa ssp. caerulea / MsaG040911

KEGG: -
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040911	XP_013450654.1	93.664	584	21	5	1	578	1	574	0.0	1031

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040911	sp\|A0A3Q7ELQ2\|MTB1_SOLLC	55.337	609	213	15	7	572	6	598	0.0	604

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040911	tr\|A0A072U4Q4\|A0A072U4Q4_MEDTR	93.664	584	21	5	1	578	1	574	0.0	1031

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG040911	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG040911	MsaG041483	0.883850	6.781212e-71	1.469178e-67

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040911	MtrunA17_Chr7g0275821	94.094	254	15	0	325	578	171	424	8.02e-155	450
MsaG040911	MtrunA17_Chr7g0275821	91.209	182	11	2	1	177	1	182	1.76e-107	329
MsaG040911	MtrunA17_Chr7g0260841	36.696	575	265	21	10	566	9	502	8.08e-99	309
MsaG040911	MtrunA17_Chr5g0411341	41.256	223	106	5	372	572	458	677	9.33e-42	160
MsaG040911	MtrunA17_Chr5g0411341	26.695	236	155	3	8	239	3	224	1.27e-20	96.3
MsaG040911	MtrunA17_Chr8g0366751	41.872	203	86	5	388	565	444	639	4.17e-40	155
MsaG040911	MtrunA17_Chr8g0366751	31.944	216	115	9	48	252	52	246	2.98e-17	85.5
MsaG040911	MtrunA17_Chr8g0346161	37.791	172	98	1	386	548	271	442	5.02e-33	132
MsaG040911	MtrunA17_Chr8g0346151	37.037	189	105	4	386	561	259	446	1.29e-30	124
MsaG040911	MtrunA17_Chr5g0400661	30.058	173	98	2	382	532	125	296	1.04e-18	87.8

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG040911	AT1G01260.1	48.052	616	248	15	4	577	3	588	4.53e-176	511
MsaG040911	AT1G01260.2	48.052	616	248	15	4	577	3	588	4.53e-176	511
MsaG040911	AT1G01260.3	48.052	616	248	15	4	577	3	588	4.53e-176	511
MsaG040911	AT2G46510.1	47.555	593	234	18	9	572	8	552	3.22e-163	477
MsaG040911	AT4G17880.1	32.914	556	301	17	48	565	61	582	2.33e-72	243
MsaG040911	AT4G16430.1	50.270	185	73	3	385	566	299	467	5.49e-54	191
MsaG040911	AT4G16430.1	37.500	240	120	6	10	240	8	226	1.26e-36	142
MsaG040911	AT5G46760.1	44.444	216	106	5	361	564	371	584	3.40e-45	169
MsaG040911	AT1G32640.1	43.684	190	91	3	387	564	433	618	2.91e-38	149
MsaG040911	AT1G32640.1	32.828	198	117	4	48	240	66	252	1.08e-19	93.6

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCAAACTTTGTCCATAT+AGG	0.517452	7:-105072722	None:intergenic
AACTGTTTATCAAATGAGAG+TGG	0.571748	7:-105074344	MsaT040911.1:CDS
AACTTTCCTAGTGCTAGAAA+TGG	0.411288	7:-105073531	MsaT040911.1:CDS
AAGGAAGCCTGCTAATGGAA+GGG	0.640978	7:-105073256	MsaT040911.1:CDS
AATAACCGGTCTCGCAGAAT+TGG	0.375253	7:+105073350	None:intergenic
AATGATAATGATTGTGTGGC+AGG	0.499914	7:+105073705	None:intergenic
ACATCTCTGTGTCGGTTACA+CGG	0.595335	7:+105073985	None:intergenic
ACCAAGAACAGCTCCAACCA+TGG	0.601753	7:+105074394	None:intergenic
ACCAGAAGCAAAACACTTAC+CGG	0.359802	7:+105073914	None:intergenic
ACCATGGTTGGAGCTGTTCT+TGG	0.376666	7:-105074395	MsaT040911.1:CDS

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	105072723	105074459	105072723	ID=MsaG040911
Chr7	mRNA	105072723	105074459	105072723	ID=MsaT040911.1;Parent=MsaG040911
Chr7	exon	105072723	105074459	105072723	ID=MsaT040911.1.exon1;Parent=MsaT040911.1
Chr7	CDS	105072723	105074459	105072723	ID=cds.MsaT040911.1;Parent=MsaT040911.1

Gene Sequence

>MsaT040911.1

ATGGGATCAATAAAGCGCATGATATGGAATGAAGAAGAGAAAACCATGGTTGGAGCTGTTCTTGGTGCTCGAGCTTTTGATTTTTTGATAAATAACTGTTTATCAAATGAGAGTGGATTGATTGCTGTTGGTGAAAGTGTTGATTCTCTTCAAAACAAACTCTCTGATCTTGTTGAAAATTCTTCATCCAATTTCAATTGGAATTACGCAATTTATTGGCGACTTTCTAAGTCAAAATCTGGTGATTACGTTCTTTGTTGGGCAGATGGGTGTTGCAGAGAACCAAACGAAGAAGAAGGTGGAGTTAGAGAAACTCTGAGTCTTGGCATAGAAGAGGAAAAAGAAGAAGAAGAAGAAGAAGGAATGAAACAAAGTATGAAGAAGTGGGTTTTGCAGAAGTTGCATAAAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTCTTTTTCCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGGTAAACATTTGTGGTTCAAATCTGTTTCTGATTACTGCTTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTGTTGAGTTGGGTTCTGTTAGATTGTTACCTGAAATCTTTGATTTGTTGAACAAAATCAAATCATTGTTTTCAATTTCAAAACCTGCCACACAATCATTATCATTGTATCCTAGTGTGGTCAATGAAGAAAGTACAGTTTCAAATGGTGTTCAAGTTCCTAAAGTTGTGTTGAATTTGAACAATGGTCGTACACATTTTAGGGAGAAACTTGCCATTAGGAAAATGGATAGTAATAATGTTAATAATAATAGCATTAACTTTCCTAGTGCTAGAAATGGTATTTGTGGTTCTACTTGGGGAGTGAATCAAGGTCAAGGTGAATTTTTTGCTTCTAATGGTGTGAGAAAGGATTTTAGGCTCAACAACAATAATAGCAACTACCAACCACAAAGGCAGATGCCAATGCAAATTGACTTTTCCGGAGCAAATTCGAGGGCCAATTCTGCGAGACCGGTTATTGCTGAATCGGAACTTGTTGCTGATGTTGAGGCTGATCAACCTAGCGATGAAAGGAGACCTAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCTCTAAATCATGTGGAGGCAGAGAGGCAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCCTTAAGAGCTGTTGTACCGAATATTTCCAAGATGGACAAGGCATCTTTACTTGGTGATGCTATTGCTTACATCAACGAGCTTCAAGCGAAACTCAAGATCATGGAGTCAGAGAGAGAATCATTTGGAAGCAGTACTTCCAGGGATGGATCAGGCAACTCGAGATCAGAAAATCGTCATCAGAATACTAGAGTTTCTCTTCCGGATGTGGATATTCAAGCTTCTCAAGATGAGGTAATAGTAAAGGTCAGCTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATCGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTTGCTGCTGCAAATGATACTATCTACCATAATTTTGTAATTAAGTCAGAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCATTTGCCCGAGAATCCAACTCCTTACAAACCCAAACTTTGTCCATATAG

Protein sequence

>MsaT040911.1

MGSIKRMIWNEEEKTMVGAVLGARAFDFLINNCLSNESGLIAVGESVDSLQNKLSDLVENSSSNFNWNYAIYWRLSKSKSGDYVLCWADGCCREPNEEEGGVRETLSLGIEEEKEEEEEEGMKQSMKKWVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFFFPKGYGGPGKCFASGKHLWFKSVSDYCFRSFLAKSAGIQTVVLVPTDFGVVELGSVRLLPEIFDLLNKIKSLFSISKPATQSLSLYPSVVNEESTVSNGVQVPKVVLNLNNGRTHFREKLAIRKMDSNNVNNNSINFPSARNGICGSTWGVNQGQGEFFASNGVRKDFRLNNNNSNYQPQRQMPMQIDFSGANSRANSARPVIAESELVADVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERESFGSSTSRDGSGNSRSENRHQNTRVSLPDVDIQASQDEVIVKVSCSLDTHPVSKVIETFKEAQISVVESKLAAANDTIYHNFVIKSEGSEQLTKDKLIAAFARESNSLQTQTLSI*