AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG040911

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040911 MtrunA17_Chr7g0275821 94.094 254 15 0 325 578 171 424 8.02e-155 450
MsaG040911 MtrunA17_Chr7g0275821 91.209 182 11 2 1 177 1 182 1.76e-107 329
MsaG040911 MtrunA17_Chr7g0260841 36.696 575 265 21 10 566 9 502 8.08e-99 309
MsaG040911 MtrunA17_Chr5g0411341 41.256 223 106 5 372 572 458 677 9.33e-42 160
MsaG040911 MtrunA17_Chr5g0411341 26.695 236 155 3 8 239 3 224 1.27e-20 96.3
MsaG040911 MtrunA17_Chr8g0366751 41.872 203 86 5 388 565 444 639 4.17e-40 155
MsaG040911 MtrunA17_Chr8g0366751 31.944 216 115 9 48 252 52 246 2.98e-17 85.5
MsaG040911 MtrunA17_Chr8g0346161 37.791 172 98 1 386 548 271 442 5.02e-33 132
MsaG040911 MtrunA17_Chr8g0346151 37.037 189 105 4 386 561 259 446 1.29e-30 124
MsaG040911 MtrunA17_Chr5g0400661 30.058 173 98 2 382 532 125 296 1.04e-18 87.8
MsaG040911 MtrunA17_Chr5g0411331 30.049 203 124 4 42 240 20 208 1.71e-18 85.5
MsaG040911 MtrunA17_Chr1g0185621 25.871 201 125 6 50 240 7 193 3.31e-18 88.6
MsaG040911 MtrunA17_Chr1g0185621 46.512 86 44 2 390 473 458 543 5.83e-14 75.1
MsaG040911 MtrunA17_Chr4g0054571 33.566 143 74 2 406 530 150 289 2.48e-17 83.6
MsaG040911 MtrunA17_Chr2g0280161 30.147 136 86 1 406 532 177 312 9.48e-17 82.0
MsaG040911 MtrunA17_Chr5g0400671 37.302 126 68 4 393 513 145 264 1.61e-16 80.9
MsaG040911 MtrunA17_Chr4g0033391 31.515 165 103 3 393 551 137 297 2.34e-16 80.5
MsaG040911 MtrunA17_Chr5g0400621 28.108 185 122 4 389 564 142 324 2.97e-16 80.5
MsaG040911 MtrunA17_Chr8g0386921 33.152 184 100 8 65 238 17 187 3.45e-16 82.0
MsaG040911 MtrunA17_Chr8g0386921 52.308 65 31 0 402 466 402 466 1.12e-13 73.9
MsaG040911 MtrunA17_Chr4g0049331 33.577 137 83 1 404 532 133 269 4.81e-16 79.3
MsaG040911 MtrunA17_Chr2g0333621 33.333 153 74 4 384 508 97 249 5.50e-16 79.3
MsaG040911 MtrunA17_Chr5g0400641 28.947 152 88 2 410 547 2 147 2.52e-15 73.9
MsaG040911 MtrunA17_Chr2g0307141 32.298 161 97 4 399 551 180 336 7.09e-15 76.6
MsaG040911 MtrunA17_Chr7g0225901 32.143 168 98 6 383 541 71 231 9.45e-15 74.3
MsaG040911 MtrunA17_Chr4g0054621 30.233 172 106 4 387 553 157 319 9.74e-15 75.9
MsaG040911 MtrunA17_Chr4g0033281 49.333 75 34 1 387 461 138 208 2.86e-14 74.3
MsaG040911 MtrunA17_Chr6g0468461 34.532 139 76 4 328 463 104 230 3.03e-14 74.3
MsaG040911 MtrunA17_Chr2g0307131 32.143 168 101 4 392 551 170 332 3.07e-14 74.3
MsaG040911 MtrunA17_Chr4g0054581 33.129 163 90 4 392 541 190 346 3.67e-14 74.3
MsaG040911 MtrunA17_Chr4g0054561 35.897 117 66 3 395 506 148 260 8.17e-14 72.8
MsaG040911 MtrunA17_Chr3g0131691 52.239 67 32 0 404 470 296 362 8.22e-14 73.9
MsaG040911 MtrunA17_Chr2g0298751 58.182 55 23 0 407 461 53 107 1.28e-13 70.9
MsaG040911 MtrunA17_Chr1g0211081 41.053 95 52 2 369 463 284 374 1.51e-13 73.2
MsaG040911 MtrunA17_Chr2g0320291 30.667 150 98 3 410 553 137 286 1.58e-13 71.6
MsaG040911 MtrunA17_Chr6g0468491 26.423 246 158 7 313 547 53 286 2.04e-13 71.6
MsaG040911 MtrunA17_Chr4g0033291 49.333 75 34 1 387 461 140 210 2.53e-13 71.2
MsaG040911 MtrunA17_Chr4g0028071 30.000 170 106 5 396 553 140 308 3.38e-13 71.2
MsaG040911 MtrunA17_Chr4g0002781 26.702 191 106 5 333 508 116 287 3.77e-13 71.2
MsaG040911 MtrunA17_Chr7g0252041 54.098 61 28 0 404 464 284 344 4.23e-13 71.6
MsaG040911 MtrunA17_Chr2g0333641 33.600 125 68 3 394 508 126 245 4.79e-13 70.5
MsaG040911 MtrunA17_Chr2g0287761 26.404 178 108 3 405 560 1 177 1.28e-12 67.0
MsaG040911 MtrunA17_Chr4g0002801 26.573 143 91 2 380 508 126 268 3.64e-12 67.8
MsaG040911 MtrunA17_Chr2g0333611 24.405 168 120 3 407 567 46 213 1.44e-11 64.3
MsaG040911 MtrunA17_Chr4g0054551 46.154 65 31 1 395 459 148 208 1.54e-11 65.9
MsaG040911 MtrunA17_Chr7g0249811 25.806 186 121 4 385 561 143 320 5.97e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG040911 AT1G01260.1 48.052 616 248 15 4 577 3 588 4.53e-176 511
MsaG040911 AT1G01260.2 48.052 616 248 15 4 577 3 588 4.53e-176 511
MsaG040911 AT1G01260.3 48.052 616 248 15 4 577 3 588 4.53e-176 511
MsaG040911 AT2G46510.1 47.555 593 234 18 9 572 8 552 3.22e-163 477
MsaG040911 AT4G17880.1 32.914 556 301 17 48 565 61 582 2.33e-72 243
MsaG040911 AT4G16430.1 50.270 185 73 3 385 566 299 467 5.49e-54 191
MsaG040911 AT4G16430.1 37.500 240 120 6 10 240 8 226 1.26e-36 142
MsaG040911 AT5G46760.1 44.444 216 106 5 361 564 371 584 3.40e-45 169
MsaG040911 AT1G32640.1 43.684 190 91 3 387 564 433 618 2.91e-38 149
MsaG040911 AT1G32640.1 32.828 198 117 4 48 240 66 252 1.08e-19 93.6
MsaG040911 AT5G46830.1 29.880 502 273 18 67 548 49 491 3.07e-36 142
MsaG040911 AT5G57150.1 33.178 214 112 8 386 578 40 243 9.36e-20 89.4
MsaG040911 AT4G37850.2 28.194 227 123 5 358 556 98 312 2.31e-18 87.0
MsaG040911 AT4G37850.1 28.194 227 123 5 358 556 98 312 2.31e-18 87.0
MsaG040911 AT5G57150.5 33.333 180 97 6 386 548 40 213 2.48e-18 84.7
MsaG040911 AT5G57150.2 33.333 180 97 6 386 548 41 214 4.01e-18 84.3
MsaG040911 AT4G00870.1 66.667 57 19 0 405 461 248 304 4.16e-18 87.4
MsaG040911 AT5G57150.3 33.333 180 97 6 386 548 41 214 4.21e-18 84.0
MsaG040911 AT5G57150.4 33.333 180 97 6 386 548 41 214 4.29e-18 85.1
MsaG040911 AT4G09820.1 28.194 227 145 5 36 253 2 219 6.06e-18 87.4
MsaG040911 AT4G09820.1 34.351 131 55 3 382 508 350 453 5.64e-16 81.3
MsaG040911 AT5G41315.2 29.167 216 127 4 41 240 9 214 1.55e-16 83.6
MsaG040911 AT5G41315.2 48.571 70 36 0 400 469 443 512 8.83e-14 74.7
MsaG040911 AT5G41315.1 29.167 216 127 4 41 240 1 206 1.55e-16 83.6
MsaG040911 AT5G41315.1 48.571 70 36 0 400 469 435 504 8.22e-14 75.1
MsaG040911 AT5G41315.3 29.167 216 127 4 41 240 6 211 1.65e-16 83.6
MsaG040911 AT5G41315.3 48.571 70 36 0 400 469 440 509 9.03e-14 74.7
MsaG040911 AT1G63650.3 29.148 223 128 8 41 247 1 209 1.80e-15 80.1
MsaG040911 AT1G63650.3 48.529 68 35 0 402 469 401 468 1.54e-13 73.9
MsaG040911 AT1G63650.1 29.148 223 128 8 41 247 1 209 1.80e-15 80.1
MsaG040911 AT1G63650.1 48.529 68 35 0 402 469 401 468 1.54e-13 73.9
MsaG040911 AT1G63650.2 29.148 223 128 8 41 247 1 209 1.80e-15 80.1
MsaG040911 AT1G63650.2 48.529 68 35 0 402 469 401 468 1.54e-13 73.9
MsaG040911 AT2G22750.3 32.911 158 89 3 388 532 140 293 2.16e-14 75.1
MsaG040911 AT2G22750.2 32.911 158 89 3 388 532 112 265 2.18e-14 74.7
MsaG040911 AT2G22750.4 32.911 158 89 3 388 532 140 293 2.32e-14 75.1
MsaG040911 AT2G22750.5 32.911 158 89 3 388 532 136 289 2.45e-14 74.7
MsaG040911 AT2G22750.1 32.911 158 89 3 388 532 112 265 2.47e-14 74.7
MsaG040911 AT4G00480.3 29.798 198 106 7 67 243 36 221 2.51e-14 76.3
MsaG040911 AT1G12860.2 53.731 67 31 0 404 470 265 331 3.34e-14 75.5
MsaG040911 AT4G00480.1 29.798 198 106 7 67 243 36 221 3.46e-14 75.9
MsaG040911 AT1G12860.1 53.731 67 31 0 404 470 265 331 3.67e-14 75.5
MsaG040911 AT4G29930.5 31.081 148 95 3 390 536 43 184 3.69e-14 72.8
MsaG040911 AT4G29930.2 28.485 165 111 3 390 553 43 201 4.49e-14 72.4
MsaG040911 AT4G00480.2 29.798 198 106 7 67 243 36 221 6.00e-14 75.1
MsaG040911 AT2G16910.1 55.385 65 27 1 410 474 318 380 1.78e-13 73.6
MsaG040911 AT4G29930.6 27.545 167 113 4 390 553 43 204 1.97e-13 70.5
MsaG040911 AT3G26744.6 55.738 61 27 0 404 464 305 365 2.03e-13 73.2
MsaG040911 AT3G26744.1 55.738 61 27 0 404 464 305 365 2.36e-13 73.2
MsaG040911 AT3G26744.4 55.738 61 27 0 404 464 305 365 2.36e-13 73.2
MsaG040911 AT3G26744.2 55.738 61 27 0 404 464 305 365 2.36e-13 73.2
MsaG040911 AT4G29930.4 48.611 72 32 1 390 461 43 109 2.43e-13 69.3
MsaG040911 AT2G22760.2 29.851 134 83 2 407 529 120 253 3.02e-13 70.9
MsaG040911 AT4G29930.3 48.611 72 32 1 390 461 43 109 3.28e-13 70.5
MsaG040911 AT4G29930.7 48.611 72 32 1 390 461 43 109 3.28e-13 70.5
MsaG040911 AT2G22760.1 29.851 134 83 2 407 529 120 253 3.49e-13 70.9
MsaG040911 AT4G29930.1 48.611 72 32 1 390 461 43 109 3.76e-13 70.1
MsaG040911 AT2G22770.1 50.000 66 30 1 400 462 123 188 4.76e-12 67.8
MsaG040911 AT2G28160.2 45.312 64 35 0 410 473 135 198 5.37e-12 67.4
MsaG040911 AT2G28160.1 45.312 64 35 0 410 473 135 198 5.93e-12 67.4
MsaG040911 AT5G65640.1 29.747 158 100 3 403 554 175 327 3.16e-11 65.5

Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAATTACGCAATTTAT+TGG 0.206579 7:-105074241 MsaT040911.1:CDS
CTGACTTAATTACAAAATTA+TGG 0.220746 7:+105072812 None:intergenic
TTACTGCTTTCGTTCTTTCT+TGG 0.235602 7:-105073862 MsaT040911.1:CDS
TGCGTAATTCCAATTGAAAT+TGG 0.241887 7:+105074250 None:intergenic
ATGCCTATATGGACAAAGTT+TGG 0.244044 7:+105072719 None:intergenic
TTCAAATTCAACACAACTTT+AGG 0.246422 7:+105073630 None:intergenic
TTCAACAAATCAAAGATTTC+AGG 0.251699 7:+105073759 None:intergenic
CCGGGTCCACCATACCCTTT+TGG 0.264704 7:+105073933 None:intergenic
CTCTATTTATCATGCCTATA+TGG 0.268867 7:+105072708 None:intergenic
CAGAAGTTGCATAAAGCTTT+TGG 0.288502 7:-105074044 MsaT040911.1:CDS
GAAACTTGCCATTAGGAAAA+TGG 0.290252 7:-105073583 MsaT040911.1:CDS
GATGAAGACAATTACGCTTT+TGG 0.306225 7:-105074014 MsaT040911.1:CDS
TCTGCCTCCACATGATTTAG+AGG 0.320999 7:+105073228 None:intergenic
GATCAATAAAGCGCATGATA+TGG 0.340119 7:-105074433 MsaT040911.1:CDS
TGCCTATATGGACAAAGTTT+GGG 0.350641 7:+105072720 None:intergenic
ATTCTTCATCCAATTTCAAT+TGG 0.357065 7:-105074259 MsaT040911.1:CDS
ACCAGAAGCAAAACACTTAC+CGG 0.359802 7:+105073914 None:intergenic
GTTTCGATTACTTTCGAAAC+AGG 0.360473 7:+105072898 None:intergenic
TTGTCCATCTTGGAAATATT+CGG 0.360963 7:+105073150 None:intergenic
TTAGGGAGAAACTTGCCATT+AGG 0.364646 7:-105073590 MsaT040911.1:CDS
GGACAAAGTTTGGGTTTGTA+AGG 0.367197 7:+105072729 None:intergenic
AATAACCGGTCTCGCAGAAT+TGG 0.375253 7:+105073350 None:intergenic
CGACTTTCTAAGTCAAAATC+TGG 0.375807 7:-105074218 MsaT040911.1:CDS
ACCATGGTTGGAGCTGTTCT+TGG 0.376666 7:-105074395 MsaT040911.1:CDS
ACTCCACCTTCTTCTTCGTT+TGG 0.377124 7:+105074155 None:intergenic
CTGGTGATTACGTTCTTTGT+TGG 0.387307 7:-105074199 MsaT040911.1:CDS
TGCATTGGCATCTGCCTTTG+TGG 0.387976 7:+105073402 None:intergenic
CTAGGTCTCCTTTCATCGCT+AGG 0.390719 7:+105073288 None:intergenic
CATTTGGAAGCAGTACTTCC+AGG 0.403231 7:-105073047 MsaT040911.1:CDS
ATTCGGTACAACAGCTCTTA+AGG 0.408610 7:+105073167 None:intergenic
ATGGTATTTGTGGTTCTACT+TGG 0.409907 7:-105073512 MsaT040911.1:CDS
AACTTTCCTAGTGCTAGAAA+TGG 0.411288 7:-105073531 MsaT040911.1:CDS
TCTTTCTTGGCTAAATCTGC+TGG 0.412934 7:-105073849 MsaT040911.1:CDS
CGCGGAAGGAAGCCTGCTAA+TGG 0.414504 7:-105073261 MsaT040911.1:CDS
TGGTGATTACGTTCTTTGTT+GGG 0.415145 7:-105074198 MsaT040911.1:CDS
TAAAGATGCCTTGTCCATCT+TGG 0.422075 7:+105073140 None:intergenic
TGAAACAAAGTATGAAGAAG+TGG 0.425466 7:-105074073 MsaT040911.1:CDS
TGCTTCTAATGGTGTGAGAA+AGG 0.436502 7:-105073460 MsaT040911.1:CDS
AGTTTGGGTTTGTAAGGAGT+TGG 0.441750 7:+105072735 None:intergenic
TTGCTTCTGGTAAACATTTG+TGG 0.442625 7:-105073902 MsaT040911.1:CDS
GAATACTAGAGTTTCTCTTC+CGG 0.446637 7:-105072986 MsaT040911.1:CDS
TTGTAAGGAGTTGGATTCTC+GGG 0.450320 7:+105072744 None:intergenic
GAGTCAGAGAGAGAATCATT+TGG 0.451334 7:-105073063 MsaT040911.1:CDS
ATGGACAAGGCATCTTTACT+TGG 0.451417 7:-105073135 MsaT040911.1:CDS
TAGAGTTTCTCTTCCGGATG+TGG 0.452720 7:-105072980 MsaT040911.1:CDS
GGTTCGTCCCTTCCATTAGC+AGG 0.455729 7:+105073249 None:intergenic
GGCTTCCTTCCGCGCTTCCT+AGG 0.458293 7:+105073270 None:intergenic
TGGTATTTGTGGTTCTACTT+GGG 0.461524 7:-105073511 MsaT040911.1:CDS
TACGTTCTTTGTTGGGCAGA+TGG 0.462040 7:-105074191 MsaT040911.1:CDS
AGTGCTAGAAATGGTATTTG+TGG 0.472584 7:-105073522 MsaT040911.1:CDS
TTTGTAAGGAGTTGGATTCT+CGG 0.473242 7:+105072743 None:intergenic
CTTTCTTCATTGACCACACT+AGG 0.491428 7:+105073678 None:intergenic
GAAGAAAGTACAGTTTCAAA+TGG 0.494078 7:-105073663 MsaT040911.1:CDS
TGCTGCAATCAACTTGTCCT+TGG 0.495738 7:+105072771 None:intergenic
AATGATAATGATTGTGTGGC+AGG 0.499914 7:+105073705 None:intergenic
TCAAGCGAAACTCAAGATCA+TGG 0.503060 7:-105073085 MsaT040911.1:CDS
ACGTTCTTTGTTGGGCAGAT+GGG 0.511903 7:-105074190 MsaT040911.1:CDS
AGTACTTCCAGGGATGGATC+AGG 0.512089 7:-105073036 MsaT040911.1:CDS
GAGGGCCAATTCTGCGAGAC+CGG 0.516559 7:-105073355 MsaT040911.1:CDS
TCAAGATGAGGTAATAGTAA+AGG 0.517416 7:-105072944 MsaT040911.1:CDS
AACCCAAACTTTGTCCATAT+AGG 0.517452 7:-105072722 None:intergenic
GGTATTTGTGGTTCTACTTG+GGG 0.519442 7:-105073510 MsaT040911.1:CDS
CGAGTTGCCTGATCCATCCC+TGG 0.522358 7:+105073029 None:intergenic
CCGGAAAAGTCAATTTGCAT+TGG 0.525652 7:+105073387 None:intergenic
GAGACCGGTTATTGCTGAAT+CGG 0.527481 7:-105073340 MsaT040911.1:CDS
TTGGCATCTGCCTTTGTGGT+TGG 0.531676 7:+105073406 None:intergenic
ATTGGCCCTCGAATTTGCTC+CGG 0.532064 7:+105073368 None:intergenic
GTTAGAGAAACTCTGAGTCT+TGG 0.536388 7:-105074134 MsaT040911.1:CDS
AGTTCCGATTCAGCAATAAC+CGG 0.536707 7:+105073336 None:intergenic
CCAAAAGGGTATGGTGGACC+CGG 0.545307 7:-105073933 MsaT040911.1:CDS
GGAAGCAGTACTTCCAGGGA+TGG 0.552030 7:-105073042 MsaT040911.1:CDS
TGTACCGAATATTTCCAAGA+TGG 0.552909 7:-105073154 MsaT040911.1:CDS
GAAGCTTGAATATCCACATC+CGG 0.553300 7:+105072967 None:intergenic
ATGTGGAGGCAGAGAGGCAA+AGG 0.553319 7:-105073218 MsaT040911.1:CDS
CCAGAAGCAAAACACTTACC+GGG 0.554206 7:+105073915 None:intergenic
GAAGAAGAGAAAACCATGGT+TGG 0.555055 7:-105074407 MsaT040911.1:CDS
GAAACAAAGTATGAAGAAGT+GGG 0.558139 7:-105074072 MsaT040911.1:CDS
TCTACTTGGGGAGTGAATCA+AGG 0.559151 7:-105073498 MsaT040911.1:CDS
GAAGGAAGCCTGCTAATGGA+AGG 0.564326 7:-105073257 MsaT040911.1:CDS
ATTTGGAAGCAGTACTTCCA+GGG 0.565753 7:-105073046 MsaT040911.1:CDS
CTGATCAACCTAGCGATGAA+AGG 0.566880 7:-105073296 MsaT040911.1:CDS
AACTGTTTATCAAATGAGAG+TGG 0.571748 7:-105074344 MsaT040911.1:CDS
CAAATACCATTTCTAGCACT+AGG 0.582823 7:+105073525 None:intergenic
GGAGACCTAGGAAGCGCGGA+AGG 0.585153 7:-105073275 MsaT040911.1:CDS
GAGAGTGGATTGATTGCTGT+TGG 0.590794 7:-105074329 MsaT040911.1:CDS
CTGTGTCGGTTACACGGTCA+AGG 0.590950 7:+105073991 None:intergenic
AGTAATCGAAACATTCAAAG+AGG 0.594015 7:-105072887 MsaT040911.1:CDS
ACATCTCTGTGTCGGTTACA+CGG 0.595335 7:+105073985 None:intergenic
TCTGAGTCTTGGCATAGAAG+AGG 0.598956 7:-105074123 MsaT040911.1:CDS
ACCAAGAACAGCTCCAACCA+TGG 0.601753 7:+105074394 None:intergenic
AGAGAACCAAACGAAGAAGA+AGG 0.608578 7:-105074161 MsaT040911.1:CDS
ATTATCATTGTATCCTAGTG+TGG 0.610408 7:-105073691 MsaT040911.1:CDS
GGAACTTGTTGCTGATGTTG+AGG 0.613094 7:-105073319 MsaT040911.1:CDS
GAACCAAACGAAGAAGAAGG+TGG 0.613103 7:-105074158 MsaT040911.1:CDS
CTAGCGATGAAAGGAGACCT+AGG 0.617300 7:-105073287 MsaT040911.1:CDS
TATTCAAGCTTCTCAAGATG+AGG 0.619645 7:-105072956 MsaT040911.1:CDS
TCAACAACACCAAAATCAGT+AGG 0.632462 7:+105073804 None:intergenic
TGGGGAGTGAATCAAGGTCA+AGG 0.636279 7:-105073492 MsaT040911.1:CDS
GGACGAACCTCTAAATCATG+TGG 0.640327 7:-105073235 MsaT040911.1:CDS
AAGGAAGCCTGCTAATGGAA+GGG 0.640978 7:-105073256 MsaT040911.1:CDS
GTTGTGTTGAATTTGAACAA+TGG 0.650673 7:-105073624 MsaT040911.1:CDS
GAAAGGAGACCTAGGAAGCG+CGG 0.657593 7:-105073279 MsaT040911.1:CDS
GAATATTTCCAAGATGGACA+AGG 0.676800 7:-105073148 MsaT040911.1:CDS
ATACAATGATAATGATTGTG+TGG 0.679020 7:+105073701 None:intergenic
TAAATCATGTGGAGGCAGAG+AGG 0.679660 7:-105073224 MsaT040911.1:CDS
CGAACCTCTAAATCATGTGG+AGG 0.682050 7:-105073232 MsaT040911.1:CDS
AGGATCTGAACAGCTTACCA+AGG 0.700634 7:-105072788 MsaT040911.1:CDS
ATAGCAACTACCAACCACAA+AGG 0.712491 7:-105073416 MsaT040911.1:CDS
GAATGAAGAAGAGAAAACCA+TGG 0.720626 7:-105074411 MsaT040911.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 105072723 105074459 105072723 ID=MsaG040911
Chr7 mRNA 105072723 105074459 105072723 ID=MsaT040911.1;Parent=MsaG040911
Chr7 exon 105072723 105074459 105072723 ID=MsaT040911.1.exon1;Parent=MsaT040911.1
Chr7 CDS 105072723 105074459 105072723 ID=cds.MsaT040911.1;Parent=MsaT040911.1
Gene Sequence

>MsaT040911.1

ATGGGATCAATAAAGCGCATGATATGGAATGAAGAAGAGAAAACCATGGTTGGAGCTGTTCTTGGTGCTCGAGCTTTTGATTTTTTGATAAATAACTGTTTATCAAATGAGAGTGGATTGATTGCTGTTGGTGAAAGTGTTGATTCTCTTCAAAACAAACTCTCTGATCTTGTTGAAAATTCTTCATCCAATTTCAATTGGAATTACGCAATTTATTGGCGACTTTCTAAGTCAAAATCTGGTGATTACGTTCTTTGTTGGGCAGATGGGTGTTGCAGAGAACCAAACGAAGAAGAAGGTGGAGTTAGAGAAACTCTGAGTCTTGGCATAGAAGAGGAAAAAGAAGAAGAAGAAGAAGAAGGAATGAAACAAAGTATGAAGAAGTGGGTTTTGCAGAAGTTGCATAAAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTCTTTTTCCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGGTAAACATTTGTGGTTCAAATCTGTTTCTGATTACTGCTTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTGTTGAGTTGGGTTCTGTTAGATTGTTACCTGAAATCTTTGATTTGTTGAACAAAATCAAATCATTGTTTTCAATTTCAAAACCTGCCACACAATCATTATCATTGTATCCTAGTGTGGTCAATGAAGAAAGTACAGTTTCAAATGGTGTTCAAGTTCCTAAAGTTGTGTTGAATTTGAACAATGGTCGTACACATTTTAGGGAGAAACTTGCCATTAGGAAAATGGATAGTAATAATGTTAATAATAATAGCATTAACTTTCCTAGTGCTAGAAATGGTATTTGTGGTTCTACTTGGGGAGTGAATCAAGGTCAAGGTGAATTTTTTGCTTCTAATGGTGTGAGAAAGGATTTTAGGCTCAACAACAATAATAGCAACTACCAACCACAAAGGCAGATGCCAATGCAAATTGACTTTTCCGGAGCAAATTCGAGGGCCAATTCTGCGAGACCGGTTATTGCTGAATCGGAACTTGTTGCTGATGTTGAGGCTGATCAACCTAGCGATGAAAGGAGACCTAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCTCTAAATCATGTGGAGGCAGAGAGGCAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCCTTAAGAGCTGTTGTACCGAATATTTCCAAGATGGACAAGGCATCTTTACTTGGTGATGCTATTGCTTACATCAACGAGCTTCAAGCGAAACTCAAGATCATGGAGTCAGAGAGAGAATCATTTGGAAGCAGTACTTCCAGGGATGGATCAGGCAACTCGAGATCAGAAAATCGTCATCAGAATACTAGAGTTTCTCTTCCGGATGTGGATATTCAAGCTTCTCAAGATGAGGTAATAGTAAAGGTCAGCTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATCGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTTGCTGCTGCAAATGATACTATCTACCATAATTTTGTAATTAAGTCAGAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCATTTGCCCGAGAATCCAACTCCTTACAAACCCAAACTTTGTCCATATAG
Protein sequence

>MsaT040911.1

MGSIKRMIWNEEEKTMVGAVLGARAFDFLINNCLSNESGLIAVGESVDSLQNKLSDLVENSSSNFNWNYAIYWRLSKSKSGDYVLCWADGCCREPNEEEGGVRETLSLGIEEEKEEEEEEGMKQSMKKWVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFFFPKGYGGPGKCFASGKHLWFKSVSDYCFRSFLAKSAGIQTVVLVPTDFGVVELGSVRLLPEIFDLLNKIKSLFSISKPATQSLSLYPSVVNEESTVSNGVQVPKVVLNLNNGRTHFREKLAIRKMDSNNVNNNSINFPSARNGICGSTWGVNQGQGEFFASNGVRKDFRLNNNNSNYQPQRQMPMQIDFSGANSRANSARPVIAESELVADVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERESFGSSTSRDGSGNSRSENRHQNTRVSLPDVDIQASQDEVIVKVSCSLDTHPVSKVIETFKEAQISVVESKLAAANDTIYHNFVIKSEGSEQLTKDKLIAAFARESNSLQTQTLSI*